Wall clock time and date at job start Tue Mar 31 2020 11:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46923 * 2 1 4 4 C 1.52995 * 109.47599 * 239.99642 * 2 1 3 5 5 C 1.52996 * 109.47012 * 119.99267 * 2 1 3 6 6 H 1.08998 * 109.49568 * 299.48664 * 5 2 1 7 7 C 1.52576 * 109.48780 * 59.53003 * 5 2 1 8 8 C 1.47096 * 114.32409 * 204.97357 * 7 5 2 9 9 C 1.54857 * 110.32912 * 297.20056 * 8 7 5 10 10 N 1.44574 * 109.60017 * 71.26414 * 9 8 7 11 11 S 1.65604 * 118.64129 * 89.25246 * 10 9 8 12 12 O 1.42102 * 104.27789 * 333.92929 * 11 10 9 13 13 O 1.42103 * 104.27809 * 206.06944 * 11 10 9 14 14 C 1.81400 * 104.44761 * 90.00337 * 11 10 9 15 15 C 1.53001 * 109.47224 * 180.02562 * 14 11 10 16 16 C 1.50692 * 109.47267 * 180.02562 * 15 14 11 17 17 H 1.07999 * 120.00267 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00179 * 179.97438 * 16 15 14 19 19 N 1.31522 * 120.00036 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00424 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47473 * 179.97438 * 20 18 16 22 22 H 1.48498 * 109.47106 * 300.00159 * 20 18 16 23 23 H 1.48497 * 109.46891 * 59.99688 * 20 18 16 24 24 C 1.47606 * 122.71567 * 269.53613 * 10 9 8 25 25 C 1.50880 * 109.49302 * 179.41397 * 5 2 1 26 26 H 1.08998 * 109.47382 * 292.91967 * 1 2 3 27 27 H 1.08998 * 109.46707 * 52.92015 * 1 2 3 28 28 H 1.08998 * 109.46749 * 172.91343 * 1 2 3 29 29 H 1.09007 * 109.47110 * 186.76518 * 3 2 1 30 30 H 1.09002 * 109.47074 * 306.76137 * 3 2 1 31 31 H 1.08997 * 109.47728 * 66.76327 * 3 2 1 32 32 H 1.08997 * 109.47326 * 299.99895 * 4 2 1 33 33 H 1.09003 * 109.47042 * 59.99953 * 4 2 1 34 34 H 1.09002 * 109.47377 * 180.02562 * 4 2 1 35 35 H 1.09000 * 108.51134 * 83.72267 * 7 5 2 36 36 H 1.08994 * 108.39137 * 326.14211 * 7 5 2 37 37 H 1.09001 * 109.32572 * 176.93644 * 8 7 5 38 38 H 1.09004 * 109.18540 * 57.37864 * 8 7 5 39 39 H 1.09004 * 109.44590 * 311.22925 * 9 8 7 40 40 H 1.08995 * 109.43214 * 191.29779 * 9 8 7 41 41 H 1.08997 * 109.47339 * 59.99963 * 14 11 10 42 42 H 1.08998 * 109.46986 * 299.99637 * 14 11 10 43 43 H 1.09001 * 109.47400 * 59.99097 * 15 14 11 44 44 H 1.09005 * 109.46647 * 299.99955 * 15 14 11 45 45 H 0.96991 * 120.00308 * 180.02562 * 19 18 16 46 46 H 1.09000 * 108.94999 * 162.56120 * 24 10 9 47 47 H 1.09003 * 108.94637 * 281.18327 * 24 10 9 48 48 H 1.09001 * 109.36723 * 268.33912 * 25 5 2 49 49 H 1.08995 * 109.36598 * 27.95753 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0400 -0.7211 1.2493 6 1 1.6844 -0.2022 2.1394 7 6 1.5220 -2.1562 1.2558 8 6 1.4320 -2.7618 2.5932 9 6 2.8377 -2.8589 3.2356 10 7 3.2971 -1.5372 3.5991 11 16 2.9239 -0.9529 5.1030 12 8 1.7335 -1.6413 5.4610 13 8 2.9337 0.4591 4.9428 14 6 4.3062 -1.4841 6.1508 15 6 4.0756 -0.9996 7.5836 16 6 5.2242 -1.4404 8.4539 17 1 6.0371 -2.0095 8.0278 18 6 5.2373 -1.1170 9.7941 19 7 4.2476 -0.4235 10.3130 20 14 6.6607 -1.6640 10.8732 21 1 6.4376 -1.1926 12.2635 22 1 6.7501 -3.1462 10.8608 23 1 7.9264 -1.0875 10.3526 24 6 4.0798 -0.6846 2.6830 25 6 3.5487 -0.7340 1.2426 26 1 -0.3634 0.4002 0.9465 27 1 -0.3633 0.6196 -0.8199 28 1 -0.3633 -1.0198 -0.1268 29 1 3.1233 1.4449 -0.1211 30 1 1.5812 1.9901 -0.8233 31 1 1.7788 1.9203 0.9442 32 1 1.6769 -1.7489 -1.2491 33 1 1.6768 -0.2075 -2.1392 34 1 3.1301 -0.7217 -1.2488 35 1 2.1858 -2.7665 0.6435 36 1 0.5301 -2.1658 0.8040 37 1 1.0042 -3.7608 2.5088 38 1 0.7894 -2.1463 3.2227 39 1 3.5330 -3.3012 2.5220 40 1 2.7866 -3.4835 4.1273 41 1 5.2352 -1.0609 5.7688 42 1 4.3717 -2.5721 6.1417 43 1 3.1466 -1.4230 7.9654 44 1 4.0098 0.0884 7.5930 45 1 4.2570 -0.1957 11.2557 46 1 4.0422 0.3450 3.0388 47 1 5.1167 -1.0206 2.6860 48 1 3.9002 -1.6439 0.7561 49 1 3.9151 0.1326 0.6923 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000116361010.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:43 Heat of formation + Delta-G solvation = -101.179222 kcal Electronic energy + Delta-G solvation = -26597.458925 eV Core-core repulsion = 23071.595696 eV Total energy + Delta-G solvation = -3525.863229 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.99269 -36.75547 -36.54064 -35.35294 -33.87460 -33.05812 -31.72293 -31.13709 -27.80467 -27.47029 -25.92332 -25.51816 -25.20870 -21.70786 -21.14235 -20.97561 -18.58807 -18.13268 -17.48060 -16.57595 -16.30856 -15.71205 -15.26045 -14.92541 -14.66730 -14.54995 -14.35622 -14.13964 -13.90261 -13.42713 -13.23383 -12.97780 -12.56477 -12.45818 -12.36594 -12.27443 -11.91606 -11.84051 -11.74312 -11.61350 -11.55713 -11.48007 -11.31052 -11.06375 -11.03154 -10.96073 -10.89532 -10.62896 -10.41568 -10.37127 -10.36436 -10.15232 -10.08715 -9.72631 -9.28490 -8.66809 -8.49561 -6.11746 -4.17488 0.80765 3.08163 3.27386 3.32127 3.34028 4.30836 4.38547 4.43613 4.53554 4.61400 4.66354 4.79207 4.96849 4.98447 5.11320 5.20436 5.23130 5.25907 5.38187 5.44190 5.47718 5.52248 5.58724 5.62555 5.64052 5.68512 5.72963 5.77253 5.79020 5.81266 5.82757 5.93451 5.97547 6.03018 6.09780 6.19664 6.22976 6.25776 6.37337 6.40435 6.48952 6.51101 6.88839 7.30710 7.37061 7.81024 8.18484 8.85729 9.47152 10.99281 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.029495 B = 0.003111 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.071262 B = 8997.236004 C = 9082.415420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.065 4.065 3 C -0.146 4.146 4 C -0.141 4.141 5 C -0.074 4.074 6 H 0.074 0.926 7 C -0.113 4.113 8 C -0.142 4.142 9 C 0.129 3.871 10 N -0.998 5.998 11 S 2.585 3.415 12 O -0.962 6.962 13 O -0.966 6.966 14 C -0.591 4.591 15 C 0.029 3.971 16 C -0.521 4.521 17 H 0.061 0.939 18 C 0.058 3.942 19 N -0.891 5.891 20 Si 0.900 3.100 21 H -0.285 1.285 22 H -0.275 1.275 23 H -0.275 1.275 24 C 0.112 3.888 25 C -0.123 4.123 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.049 0.951 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.033 0.967 44 H 0.032 0.968 45 H 0.266 0.734 46 H 0.094 0.906 47 H 0.060 0.940 48 H 0.064 0.936 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.272 -2.543 -23.382 23.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.066 4.066 3 C -0.203 4.203 4 C -0.198 4.198 5 C -0.093 4.093 6 H 0.093 0.907 7 C -0.151 4.151 8 C -0.181 4.181 9 C 0.003 3.997 10 N -0.834 5.834 11 S 2.683 3.317 12 O -0.952 6.952 13 O -0.956 6.956 14 C -0.724 4.724 15 C -0.010 4.010 16 C -0.561 4.561 17 H 0.079 0.921 18 C -0.145 4.145 19 N -0.529 5.529 20 Si 0.727 3.273 21 H -0.210 1.210 22 H -0.201 1.201 23 H -0.201 1.201 24 C -0.013 4.013 25 C -0.162 4.162 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.051 0.949 44 H 0.051 0.949 45 H 0.075 0.925 46 H 0.112 0.888 47 H 0.079 0.921 48 H 0.083 0.917 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.124 -1.978 -23.069 23.518 hybrid contribution 1.363 -0.654 0.714 1.672 sum -2.761 -2.632 -22.355 22.678 Atomic orbital electron populations 1.21951 0.94835 1.01598 1.01732 1.20606 0.95453 0.95350 0.95142 1.21965 1.00997 0.95380 1.01920 1.21913 1.01016 1.00180 0.96693 1.20708 0.95051 0.95999 0.97544 0.90719 1.20605 1.01453 0.95546 0.97458 1.21309 0.98015 1.01528 0.97254 1.21137 0.94897 0.83090 1.00600 1.57346 1.69453 1.25284 1.31323 1.05864 0.77459 0.74516 0.73836 1.93537 1.43615 1.75280 1.82801 1.93514 1.87691 1.29771 1.84666 1.30490 1.17184 1.11142 1.13577 1.18948 0.99276 0.97380 0.85434 1.20974 1.05928 1.35706 0.93452 0.92116 1.25071 0.96344 0.94951 0.98100 1.69945 1.31324 1.37979 1.13631 0.86529 0.82302 0.79060 0.79384 1.21049 1.20071 1.20072 1.21652 0.93868 0.95394 0.90378 1.21806 0.95939 1.02601 0.95819 0.92533 0.92978 0.92374 0.92310 0.92950 0.92288 0.92602 0.93202 0.92561 0.92554 0.91976 0.91142 0.90776 0.90761 0.90483 0.86370 0.86399 0.94916 0.94936 0.92464 0.88799 0.92140 0.91709 0.90307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 8.00 37.16 0.30 -0.97 16 2 C -0.07 -0.58 0.55 -154.51 -0.09 -0.66 16 3 C -0.15 -1.29 8.06 37.16 0.30 -0.99 16 4 C -0.14 -1.05 7.94 37.15 0.30 -0.76 16 5 C -0.07 -0.77 1.17 -91.90 -0.11 -0.88 16 6 H 0.07 0.99 7.48 -51.93 -0.39 0.60 16 7 C -0.11 -1.11 3.52 -29.78 -0.10 -1.21 16 8 C -0.14 -1.62 5.65 -28.59 -0.16 -1.78 16 9 C 0.13 1.51 5.21 -4.09 -0.02 1.48 16 10 N -1.00 -13.48 2.48 -113.51 -0.28 -13.76 16 11 S 2.58 47.08 5.30 -107.50 -0.57 46.51 16 12 O -0.96 -19.81 16.00 -57.54 -0.92 -20.73 16 13 O -0.97 -20.00 16.35 -57.54 -0.94 -20.94 16 14 C -0.59 -11.53 6.12 37.16 0.23 -11.30 16 15 C 0.03 0.74 4.98 -27.89 -0.14 0.60 16 16 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 17 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 20 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 C 0.11 1.29 6.18 -3.12 -0.02 1.27 16 25 C -0.12 -1.16 3.91 -27.48 -0.11 -1.27 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.41 8.12 -51.93 -0.42 -0.01 16 28 H 0.06 0.48 6.30 -51.93 -0.33 0.16 16 29 H 0.06 0.48 6.30 -51.92 -0.33 0.15 16 30 H 0.05 0.42 8.12 -51.93 -0.42 -0.01 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.41 7.01 -51.93 -0.36 0.04 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.40 7.06 -51.93 -0.37 0.04 16 35 H 0.06 0.48 6.98 -51.93 -0.36 0.12 16 36 H 0.06 0.57 5.55 -51.93 -0.29 0.29 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 1.04 7.24 -51.93 -0.38 0.67 16 39 H 0.07 0.69 8.07 -51.93 -0.42 0.27 16 40 H 0.08 0.91 7.68 -51.93 -0.40 0.51 16 41 H 0.12 2.09 8.14 -51.93 -0.42 1.66 16 42 H 0.12 2.08 8.14 -51.92 -0.42 1.65 16 43 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 46 H 0.09 1.21 6.57 -51.93 -0.34 0.87 16 47 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 48 H 0.06 0.54 7.29 -51.93 -0.38 0.16 16 49 H 0.08 0.66 5.44 -51.93 -0.28 0.38 16 LS Contribution 374.65 15.07 5.65 5.65 Total: -1.00 -33.24 374.65 -10.20 -43.44 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -8.81 Total: -0.71 kcal Atomic # 6 Polarization: -29.75 SS G_CDS: -0.04 Total: -29.79 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 0.46 Total: -39.70 kcal Atomic # 8 Polarization: -39.81 SS G_CDS: -1.86 Total: -41.67 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 47.08 SS G_CDS: -0.57 Total: 46.51 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.24 -10.20 -43.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116361010.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.744 kcal (2) G-P(sol) polarization free energy of solvation -33.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds