Wall clock time and date at job start Tue Mar 31 2020 11:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46923 * 2 1 4 4 C 1.52995 * 109.47599 * 239.99642 * 2 1 3 5 5 C 1.52996 * 109.47012 * 119.99267 * 2 1 3 6 6 H 1.08998 * 109.49568 * 299.48664 * 5 2 1 7 7 C 1.52576 * 109.48780 * 59.53003 * 5 2 1 8 8 C 1.47096 * 114.32409 * 204.97357 * 7 5 2 9 9 C 1.54857 * 110.32912 * 297.20056 * 8 7 5 10 10 N 1.44574 * 109.60017 * 71.26414 * 9 8 7 11 11 S 1.65604 * 118.64129 * 89.25246 * 10 9 8 12 12 O 1.42102 * 104.27789 * 333.92929 * 11 10 9 13 13 O 1.42103 * 104.27809 * 206.06944 * 11 10 9 14 14 C 1.81400 * 104.44761 * 90.00337 * 11 10 9 15 15 C 1.53001 * 109.47224 * 180.02562 * 14 11 10 16 16 C 1.50692 * 109.47267 * 180.02562 * 15 14 11 17 17 H 1.07999 * 120.00267 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00179 * 179.97438 * 16 15 14 19 19 N 1.31522 * 120.00036 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00424 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47473 * 179.97438 * 20 18 16 22 22 H 1.48498 * 109.47106 * 300.00159 * 20 18 16 23 23 H 1.48497 * 109.46891 * 59.99688 * 20 18 16 24 24 C 1.47606 * 122.71567 * 269.53613 * 10 9 8 25 25 C 1.50880 * 109.49302 * 179.41397 * 5 2 1 26 26 H 1.08998 * 109.47382 * 292.91967 * 1 2 3 27 27 H 1.08998 * 109.46707 * 52.92015 * 1 2 3 28 28 H 1.08998 * 109.46749 * 172.91343 * 1 2 3 29 29 H 1.09007 * 109.47110 * 186.76518 * 3 2 1 30 30 H 1.09002 * 109.47074 * 306.76137 * 3 2 1 31 31 H 1.08997 * 109.47728 * 66.76327 * 3 2 1 32 32 H 1.08997 * 109.47326 * 299.99895 * 4 2 1 33 33 H 1.09003 * 109.47042 * 59.99953 * 4 2 1 34 34 H 1.09002 * 109.47377 * 180.02562 * 4 2 1 35 35 H 1.09000 * 108.51134 * 83.72267 * 7 5 2 36 36 H 1.08994 * 108.39137 * 326.14211 * 7 5 2 37 37 H 1.09001 * 109.32572 * 176.93644 * 8 7 5 38 38 H 1.09004 * 109.18540 * 57.37864 * 8 7 5 39 39 H 1.09004 * 109.44590 * 311.22925 * 9 8 7 40 40 H 1.08995 * 109.43214 * 191.29779 * 9 8 7 41 41 H 1.08997 * 109.47339 * 59.99963 * 14 11 10 42 42 H 1.08998 * 109.46986 * 299.99637 * 14 11 10 43 43 H 1.09001 * 109.47400 * 59.99097 * 15 14 11 44 44 H 1.09005 * 109.46647 * 299.99955 * 15 14 11 45 45 H 0.96991 * 120.00308 * 180.02562 * 19 18 16 46 46 H 1.09000 * 108.94999 * 162.56120 * 24 10 9 47 47 H 1.09003 * 108.94637 * 281.18327 * 24 10 9 48 48 H 1.09001 * 109.36723 * 268.33912 * 25 5 2 49 49 H 1.08995 * 109.36598 * 27.95753 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0400 -0.7211 1.2493 6 1 1.6844 -0.2022 2.1394 7 6 1.5220 -2.1562 1.2558 8 6 1.4320 -2.7618 2.5932 9 6 2.8377 -2.8589 3.2356 10 7 3.2971 -1.5372 3.5991 11 16 2.9239 -0.9529 5.1030 12 8 1.7335 -1.6413 5.4610 13 8 2.9337 0.4591 4.9428 14 6 4.3062 -1.4841 6.1508 15 6 4.0756 -0.9996 7.5836 16 6 5.2242 -1.4404 8.4539 17 1 6.0371 -2.0095 8.0278 18 6 5.2373 -1.1170 9.7941 19 7 4.2476 -0.4235 10.3130 20 14 6.6607 -1.6640 10.8732 21 1 6.4376 -1.1926 12.2635 22 1 6.7501 -3.1462 10.8608 23 1 7.9264 -1.0875 10.3526 24 6 4.0798 -0.6846 2.6830 25 6 3.5487 -0.7340 1.2426 26 1 -0.3634 0.4002 0.9465 27 1 -0.3633 0.6196 -0.8199 28 1 -0.3633 -1.0198 -0.1268 29 1 3.1233 1.4449 -0.1211 30 1 1.5812 1.9901 -0.8233 31 1 1.7788 1.9203 0.9442 32 1 1.6769 -1.7489 -1.2491 33 1 1.6768 -0.2075 -2.1392 34 1 3.1301 -0.7217 -1.2488 35 1 2.1858 -2.7665 0.6435 36 1 0.5301 -2.1658 0.8040 37 1 1.0042 -3.7608 2.5088 38 1 0.7894 -2.1463 3.2227 39 1 3.5330 -3.3012 2.5220 40 1 2.7866 -3.4835 4.1273 41 1 5.2352 -1.0609 5.7688 42 1 4.3717 -2.5721 6.1417 43 1 3.1466 -1.4230 7.9654 44 1 4.0098 0.0884 7.5930 45 1 4.2570 -0.1957 11.2557 46 1 4.0422 0.3450 3.0388 47 1 5.1167 -1.0206 2.6860 48 1 3.9002 -1.6439 0.7561 49 1 3.9151 0.1326 0.6923 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000116361010.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:42 Heat of formation + Delta-G solvation = -122.039509 kcal Electronic energy + Delta-G solvation = -26598.363495 eV Core-core repulsion = 23071.595696 eV Total energy + Delta-G solvation = -3526.767799 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.79312 -38.24622 -37.54732 -36.92476 -35.91104 -33.96040 -33.14123 -32.55894 -28.55949 -28.07342 -27.61593 -26.73983 -26.07694 -23.59217 -22.05632 -21.94090 -19.73817 -19.19271 -18.90751 -18.33431 -17.48459 -17.07497 -16.58759 -16.38179 -16.21473 -15.47205 -15.17954 -15.14005 -14.86325 -14.74146 -14.47192 -14.16798 -13.81521 -13.74814 -13.54526 -13.27410 -13.17314 -13.12108 -12.91582 -12.85962 -12.81059 -12.62356 -12.53330 -12.47076 -12.25587 -12.17032 -12.09480 -11.88789 -11.77635 -11.74703 -11.49357 -11.18818 -11.07139 -10.91155 -10.84280 -10.65852 -9.79103 -8.27530 -6.42523 -0.68678 1.39580 1.43539 1.51802 1.79079 2.37016 2.86607 3.05332 3.20013 3.56356 3.79128 3.87606 3.94737 4.05771 4.07937 4.13463 4.21404 4.28688 4.42440 4.50804 4.57130 4.70382 4.71333 4.73622 4.79358 4.87410 4.87749 4.95447 4.97005 4.98336 5.08656 5.13896 5.20124 5.23396 5.23874 5.26573 5.28112 5.31230 5.40185 5.45174 5.48378 5.55273 5.65985 5.67816 5.71398 5.90101 6.03928 6.70965 7.27898 8.84676 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.029495 B = 0.003111 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.071262 B = 8997.236004 C = 9082.415420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.064 4.064 3 C -0.146 4.146 4 C -0.136 4.136 5 C -0.077 4.077 6 H 0.035 0.965 7 C -0.112 4.112 8 C -0.143 4.143 9 C 0.118 3.882 10 N -0.983 5.983 11 S 2.603 3.397 12 O -0.991 6.991 13 O -0.997 6.997 14 C -0.589 4.589 15 C 0.022 3.978 16 C -0.542 4.542 17 H 0.076 0.924 18 C -0.005 4.005 19 N -0.935 5.935 20 Si 0.976 3.024 21 H -0.283 1.283 22 H -0.262 1.262 23 H -0.262 1.262 24 C 0.102 3.898 25 C -0.118 4.118 26 H 0.034 0.966 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.035 0.965 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.036 0.964 39 H 0.114 0.886 40 H 0.073 0.927 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.004 0.996 44 H 0.003 0.997 45 H 0.268 0.732 46 H 0.073 0.927 47 H 0.089 0.911 48 H 0.090 0.910 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.043 -4.485 -25.993 26.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.064 4.064 3 C -0.203 4.203 4 C -0.193 4.193 5 C -0.096 4.096 6 H 0.053 0.947 7 C -0.149 4.149 8 C -0.182 4.182 9 C -0.007 4.007 10 N -0.822 5.822 11 S 2.700 3.300 12 O -0.982 6.982 13 O -0.987 6.987 14 C -0.721 4.721 15 C -0.017 4.017 16 C -0.581 4.581 17 H 0.094 0.906 18 C -0.203 4.203 19 N -0.575 5.575 20 Si 0.799 3.201 21 H -0.209 1.209 22 H -0.186 1.186 23 H -0.187 1.187 24 C -0.022 4.022 25 C -0.156 4.156 26 H 0.053 0.947 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.107 0.893 38 H 0.055 0.945 39 H 0.132 0.868 40 H 0.092 0.908 41 H 0.158 0.842 42 H 0.158 0.842 43 H 0.022 0.978 44 H 0.021 0.979 45 H 0.077 0.923 46 H 0.091 0.909 47 H 0.108 0.892 48 H 0.108 0.892 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.889 -3.921 -25.679 26.046 hybrid contribution 0.593 -0.024 1.456 1.572 sum -1.295 -3.946 -24.223 24.577 Atomic orbital electron populations 1.21964 0.95234 1.02045 1.00944 1.20593 0.95190 0.95252 0.95362 1.21978 1.01749 0.95552 1.01052 1.21870 1.01543 1.00229 0.95651 1.20713 0.95961 0.96259 0.96679 0.94653 1.20591 1.02348 0.95230 0.96686 1.21337 0.97347 1.02013 0.97549 1.21475 0.95893 0.81803 1.01518 1.56959 1.69654 1.26365 1.29190 1.05019 0.76583 0.73591 0.74764 1.93491 1.44998 1.75651 1.84020 1.93468 1.87887 1.31945 1.85451 1.30393 1.19104 1.12560 1.10018 1.18800 0.97848 0.95558 0.89518 1.21497 1.06692 1.35662 0.94218 0.90554 1.26162 0.99365 0.94834 0.99939 1.70103 1.33762 1.39469 1.14126 0.85338 0.78627 0.79175 0.76972 1.20887 1.18645 1.18654 1.21951 0.95171 0.94109 0.90998 1.21832 0.94972 1.04465 0.94354 0.94662 0.92026 0.91714 0.91306 0.92008 0.94579 0.92008 0.92597 0.91640 0.89998 0.91641 0.89307 0.94504 0.86833 0.90825 0.84243 0.84202 0.97788 0.97863 0.92332 0.90862 0.89244 0.89162 0.89020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 8.00 71.98 0.58 -1.89 16 2 C -0.06 -1.03 0.55 -52.18 -0.03 -1.06 16 3 C -0.15 -2.45 8.06 71.98 0.58 -1.87 16 4 C -0.14 -1.57 7.94 71.98 0.57 -0.99 16 5 C -0.08 -1.50 1.17 -11.63 -0.01 -1.52 16 6 H 0.03 0.97 7.48 -2.39 -0.02 0.95 16 7 C -0.11 -1.92 3.52 28.62 0.10 -1.82 16 8 C -0.14 -3.10 5.65 29.39 0.17 -2.93 16 9 C 0.12 2.50 5.21 87.37 0.45 2.95 16 10 N -0.98 -25.50 2.48 -513.04 -1.27 -26.77 16 11 S 2.60 97.77 5.30 -56.49 -0.30 97.47 16 12 O -0.99 -42.78 16.00 -127.65 -2.04 -44.82 16 13 O -1.00 -43.44 16.35 -127.65 -2.09 -45.52 16 14 C -0.59 -23.10 6.12 71.98 0.44 -22.66 16 15 C 0.02 1.16 4.98 29.85 0.15 1.31 16 16 C -0.54 -30.60 9.11 25.60 0.23 -30.36 16 17 H 0.08 3.95 7.74 -2.91 -0.02 3.93 16 18 C 0.00 -0.27 5.46 84.65 0.46 0.20 16 19 N -0.94 -57.80 13.29 21.45 0.28 -57.52 16 20 Si 0.98 43.58 29.54 68.60 2.03 45.60 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 22 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 23 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 24 C 0.10 2.15 6.18 86.37 0.53 2.69 16 25 C -0.12 -1.88 3.91 30.11 0.12 -1.76 16 26 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.06 0.91 8.12 -2.39 -0.02 0.89 16 28 H 0.06 1.00 6.30 -2.39 -0.02 0.98 16 29 H 0.07 0.99 6.30 -2.38 -0.02 0.97 16 30 H 0.06 0.90 8.12 -2.39 -0.02 0.88 16 31 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 0.66 7.01 -2.39 -0.02 0.64 16 33 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.06 0.65 7.06 -2.39 -0.02 0.64 16 35 H 0.08 1.03 6.98 -2.39 -0.02 1.01 16 36 H 0.07 1.08 5.55 -2.39 -0.01 1.07 16 37 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.04 1.07 7.24 -2.39 -0.02 1.05 16 39 H 0.11 1.57 8.07 -2.39 -0.02 1.56 16 40 H 0.07 1.62 7.68 -2.39 -0.02 1.60 16 41 H 0.14 4.79 8.14 -2.39 -0.02 4.78 16 42 H 0.14 4.79 8.14 -2.39 -0.02 4.77 16 43 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 44 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 45 H 0.27 15.47 8.31 -92.72 -0.77 14.70 16 46 H 0.07 1.88 6.57 -2.39 -0.02 1.86 16 47 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.09 1.04 7.29 -2.39 -0.02 1.02 16 49 H 0.09 1.26 5.44 -2.39 -0.01 1.25 16 Total: -1.00 -75.71 374.65 1.86 -73.85 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: 0.90 Total: 17.40 kcal Atomic # 6 Polarization: -64.04 SS G_CDS: 4.34 Total: -59.70 kcal Atomic # 7 Polarization: -83.30 SS G_CDS: -0.98 Total: -84.29 kcal Atomic # 8 Polarization: -86.21 SS G_CDS: -4.13 Total: -90.34 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: 97.77 SS G_CDS: -0.30 Total: 97.47 kcal Total: -75.71 1.86 -73.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116361010.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.188 kcal (2) G-P(sol) polarization free energy of solvation -75.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds