Wall clock time and date at job start Tue Mar 31 2020 12:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46510 * 2 1 4 4 C 1.53001 * 109.47529 * 119.99799 * 2 1 3 5 5 H 1.08997 * 109.57972 * 51.72401 * 4 2 1 6 6 C 1.53189 * 109.70093 * 291.36758 * 4 2 1 7 7 C 1.53047 * 109.31045 * 185.50516 * 6 4 2 8 8 C 1.53042 * 109.53667 * 61.36705 * 7 6 4 9 9 C 1.53194 * 109.31117 * 298.63502 * 8 7 6 10 10 N 1.46924 * 109.58660 * 172.00873 * 4 2 1 11 11 C 1.34780 * 120.63167 * 353.26001 * 10 4 2 12 12 O 1.21589 * 119.99628 * 6.37973 * 11 10 4 13 13 C 1.47536 * 120.00030 * 186.37913 * 11 10 4 14 14 C 1.39662 * 120.19530 * 19.84729 * 13 11 10 15 15 C 1.37832 * 119.91937 * 180.02562 * 14 13 11 16 16 C 1.38575 * 120.31809 * 359.97438 * 15 14 13 17 17 C 1.38023 * 120.40886 * 359.97438 * 16 15 14 18 18 C 1.38838 * 120.06577 * 359.76311 * 17 16 15 19 19 O 1.35520 * 120.16245 * 180.26016 * 18 17 16 20 20 C 1.34815 * 116.99637 * 6.25894 * 19 18 17 21 21 H 1.08003 * 120.00140 * 5.52294 * 20 19 18 22 22 C 1.38701 * 120.00024 * 185.50955 * 20 19 18 23 23 N 1.31524 * 119.99684 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00162 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.46823 * 90.00372 * 24 22 20 26 26 H 1.48500 * 109.47078 * 210.00370 * 24 22 20 27 27 H 1.48503 * 109.47128 * 330.00615 * 24 22 20 28 28 H 1.09002 * 109.47325 * 305.07293 * 1 2 3 29 29 H 1.08993 * 109.47312 * 65.07954 * 1 2 3 30 30 H 1.09001 * 109.46636 * 185.07932 * 1 2 3 31 31 H 1.08997 * 109.47158 * 240.00155 * 2 1 3 32 32 H 1.09009 * 109.46925 * 168.98520 * 3 2 1 33 33 H 1.09002 * 109.46920 * 288.97823 * 3 2 1 34 34 H 1.08994 * 109.47293 * 48.98198 * 3 2 1 35 35 H 1.09001 * 109.50224 * 305.45350 * 6 4 2 36 36 H 1.09001 * 109.50254 * 65.55593 * 6 4 2 37 37 H 1.09003 * 109.46075 * 181.38437 * 7 6 4 38 38 H 1.08994 * 109.45921 * 301.34905 * 7 6 4 39 39 H 1.08999 * 109.49739 * 58.58550 * 8 7 6 40 40 H 1.09000 * 109.49739 * 178.64989 * 8 7 6 41 41 H 1.09003 * 109.58866 * 294.84605 * 9 8 7 42 42 H 1.09003 * 109.58458 * 174.42096 * 9 8 7 43 43 H 1.07997 * 120.04331 * 0.02562 * 14 13 11 44 44 H 1.07994 * 119.83859 * 179.97438 * 15 14 13 45 45 H 1.08005 * 119.79747 * 180.02562 * 16 15 14 46 46 H 1.07999 * 119.96890 * 180.02562 * 17 16 15 47 47 H 0.97007 * 119.99965 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.5621 -1.6976 1.3281 6 6 1.7169 0.1110 2.4941 7 6 2.3495 -0.5483 3.7219 8 6 3.8698 -0.5933 3.5523 9 6 4.2174 -1.4334 2.3194 10 7 3.4967 -0.8915 1.1594 11 6 4.1583 -0.5623 0.0323 12 8 3.5705 -0.0128 -0.8792 13 6 5.5959 -0.8687 -0.0954 14 6 6.1832 -1.8364 0.7225 15 6 7.5268 -2.1177 0.5988 16 6 8.2993 -1.4451 -0.3346 17 6 7.7324 -0.4870 -1.1505 18 6 6.3794 -0.1944 -1.0436 19 8 5.8197 0.7422 -1.8473 20 6 6.5992 1.2614 -2.8170 21 1 7.5901 0.8652 -2.9834 22 6 6.1285 2.3041 -3.6013 23 7 4.9220 2.7867 -3.3985 24 14 7.2083 3.0230 -4.9454 25 1 6.9715 2.2903 -6.2152 26 1 6.8761 4.4582 -5.1325 27 1 8.6356 2.8917 -4.5569 28 1 -0.3634 0.5905 0.8411 29 1 -0.3633 0.4330 -0.9319 30 1 -0.3632 -1.0237 0.0910 31 1 1.8933 -0.5138 -0.8900 32 1 3.1121 1.4490 0.1964 33 1 1.8458 1.8965 -0.9718 34 1 1.5251 2.0099 0.7753 35 1 2.1188 1.1170 2.3738 36 1 0.6362 0.1639 2.6259 37 1 2.1004 0.0284 4.6127 38 1 1.9657 -1.5630 3.8274 39 1 4.2515 0.4193 3.4220 40 1 4.3215 -1.0412 4.4375 41 1 3.9171 -2.4680 2.4855 42 1 5.2910 -1.3873 2.1366 43 1 5.5854 -2.3637 1.4512 44 1 7.9797 -2.8660 1.2322 45 1 9.3513 -1.6725 -0.4247 46 1 8.3410 0.0327 -1.8758 47 1 4.5929 3.5162 -3.9467 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117197037.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:05 Heat of formation + Delta-G solvation = 18.248973 kcal Electronic energy + Delta-G solvation = -28516.149504 eV Core-core repulsion = 24860.021119 eV Total energy + Delta-G solvation = -3656.128385 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.62645 -38.83227 -36.73335 -36.59048 -34.82483 -32.60717 -32.30443 -30.46612 -29.44395 -28.87452 -26.55819 -25.47769 -25.21730 -23.78035 -22.58460 -21.66763 -20.60311 -19.85882 -18.51899 -18.04414 -16.80276 -16.18786 -15.49061 -15.11237 -14.95272 -14.73785 -14.39901 -14.33797 -14.22616 -13.75808 -13.58184 -13.28428 -13.17537 -13.01352 -12.52737 -12.41364 -12.21840 -12.01300 -11.73839 -11.55228 -11.44405 -11.33526 -11.16342 -10.94640 -10.84440 -10.83363 -10.61008 -10.48126 -10.18636 -10.10193 -9.97985 -9.83253 -9.43781 -8.85967 -8.24767 -8.07254 -7.88254 -7.28442 -6.44634 -4.03274 1.73919 2.30611 3.12323 3.12861 3.17414 3.49196 3.72512 3.94090 4.58154 4.84013 4.93444 4.97267 5.09142 5.12372 5.22082 5.32744 5.44651 5.47955 5.52771 5.55023 5.64162 5.72149 5.73658 5.83626 5.87885 5.95809 5.99443 6.04121 6.08301 6.14081 6.18353 6.21576 6.37413 6.38925 6.43352 6.56650 6.62932 6.69002 6.83847 6.90628 6.99537 7.05991 7.25361 7.27755 7.30969 7.37864 7.71034 7.92745 8.09462 8.96317 9.13444 9.68134 10.69561 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012855 B = 0.005370 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.605982 B = 5213.025171 C = 6936.251529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.096 4.096 3 C -0.116 4.116 4 C 0.159 3.841 5 H 0.059 0.941 6 C -0.135 4.135 7 C -0.118 4.118 8 C -0.136 4.136 9 C 0.067 3.933 10 N -0.614 5.614 11 C 0.552 3.448 12 O -0.484 6.484 13 C -0.223 4.223 14 C -0.074 4.074 15 C -0.231 4.231 16 C -0.054 4.054 17 C -0.238 4.238 18 C 0.189 3.811 19 O -0.128 6.128 20 C -0.400 4.400 21 H 0.092 0.908 22 C 0.045 3.955 23 N -0.835 5.835 24 Si 0.939 3.061 25 H -0.272 1.272 26 H -0.277 1.277 27 H -0.267 1.267 28 H 0.046 0.954 29 H 0.053 0.947 30 H 0.045 0.955 31 H 0.110 0.890 32 H 0.069 0.931 33 H 0.051 0.949 34 H 0.021 0.979 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.130 0.870 43 H 0.147 0.853 44 H 0.109 0.891 45 H 0.109 0.891 46 H 0.130 0.870 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.466 -7.406 11.993 14.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.114 4.114 3 C -0.173 4.173 4 C 0.056 3.944 5 H 0.077 0.923 6 C -0.173 4.173 7 C -0.156 4.156 8 C -0.174 4.174 9 C -0.055 4.055 10 N -0.350 5.350 11 C 0.344 3.656 12 O -0.359 6.359 13 C -0.227 4.227 14 C -0.092 4.092 15 C -0.250 4.250 16 C -0.072 4.072 17 C -0.257 4.257 18 C 0.130 3.870 19 O -0.027 6.027 20 C -0.476 4.476 21 H 0.109 0.891 22 C -0.162 4.162 23 N -0.466 5.466 24 Si 0.763 3.237 25 H -0.198 1.198 26 H -0.202 1.202 27 H -0.191 1.191 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.127 0.873 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.040 0.960 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.147 0.853 43 H 0.164 0.836 44 H 0.127 0.873 45 H 0.127 0.873 46 H 0.148 0.852 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.201 -6.760 11.329 13.576 hybrid contribution 0.669 0.308 -0.467 0.872 sum -2.533 -6.452 10.863 12.886 Atomic orbital electron populations 1.21991 0.97022 1.00471 1.01307 1.21770 0.92917 0.98438 0.98248 1.21863 1.01638 0.93831 0.99962 1.21208 0.80041 0.97540 0.95617 0.92271 1.22089 1.00352 1.00548 0.94350 1.21515 0.95613 1.00590 0.97845 1.21952 0.96310 1.01355 0.97823 1.22953 1.00721 0.96248 0.85553 1.47852 1.06816 1.66499 1.13880 1.18140 0.86581 0.78752 0.82105 1.90916 1.66577 1.38614 1.39782 1.18911 0.93331 1.05981 1.04512 1.21732 0.95397 0.95811 0.96212 1.20524 0.94492 1.05640 1.04313 1.20905 0.98502 0.93983 0.93828 1.21162 0.95068 1.04097 1.05360 1.19273 0.90466 0.88776 0.88509 1.84139 1.37858 1.44107 1.36593 1.21430 0.99454 1.17243 1.09484 0.89062 1.25337 0.96623 0.95761 0.98490 1.70103 1.15393 1.23681 1.37446 0.85751 0.79395 0.78436 0.80072 1.19773 1.20198 1.19143 0.93475 0.92750 0.93621 0.87255 0.91205 0.93001 0.95980 0.90832 0.91416 0.92302 0.92301 0.91455 0.91297 0.92112 0.85343 0.83643 0.87313 0.87337 0.85196 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 8.89 37.16 0.33 -1.80 16 2 C -0.10 -1.67 2.16 -90.62 -0.20 -1.87 16 3 C -0.12 -2.32 6.81 37.16 0.25 -2.06 16 4 C 0.16 2.41 2.63 -67.60 -0.18 2.24 16 5 H 0.06 0.83 8.12 -51.93 -0.42 0.41 16 6 C -0.14 -1.75 4.68 -26.61 -0.12 -1.88 16 7 C -0.12 -1.28 5.88 -26.69 -0.16 -1.44 16 8 C -0.14 -1.55 6.08 -26.61 -0.16 -1.71 16 9 C 0.07 0.87 4.70 -3.71 -0.02 0.86 16 10 N -0.61 -10.24 2.90 -166.44 -0.48 -10.72 16 11 C 0.55 11.78 6.47 -12.47 -0.08 11.70 16 12 O -0.48 -12.08 8.84 -15.58 -0.14 -12.22 16 13 C -0.22 -4.75 5.70 -104.81 -0.60 -5.35 16 14 C -0.07 -1.25 7.63 -39.20 -0.30 -1.55 16 15 C -0.23 -3.72 10.03 -39.61 -0.40 -4.12 16 16 C -0.05 -0.94 10.03 -39.54 -0.40 -1.34 16 17 C -0.24 -5.08 9.12 -39.44 -0.36 -5.44 16 18 C 0.19 4.61 6.64 -38.60 -0.26 4.36 16 19 O -0.13 -3.70 8.03 -20.07 -0.16 -3.86 16 20 C -0.40 -11.18 9.44 30.90 0.29 -10.89 16 21 H 0.09 2.34 5.31 -52.48 -0.28 2.06 16 22 C 0.05 1.25 5.49 -17.51 -0.10 1.15 16 23 N -0.83 -24.65 13.67 55.48 0.76 -23.89 16 24 Si 0.94 20.47 29.55 -169.99 -5.02 15.44 16 25 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 26 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 27 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 28 H 0.05 0.60 7.04 -51.93 -0.37 0.24 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.04 0.57 8.13 -51.93 -0.42 0.15 16 31 H 0.11 2.30 5.81 -52.69 -0.31 2.00 16 32 H 0.07 1.62 5.45 -51.92 -0.28 1.34 16 33 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.02 0.38 6.86 -51.93 -0.36 0.02 16 35 H 0.07 1.09 6.27 -51.93 -0.33 0.76 16 36 H 0.07 0.78 7.10 -51.93 -0.37 0.41 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.67 8.04 -51.93 -0.42 0.25 16 42 H 0.13 1.73 3.48 -64.79 -0.23 1.51 16 43 H 0.15 1.98 4.38 -52.49 -0.23 1.75 16 44 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 45 H 0.11 1.57 8.06 -52.48 -0.42 1.14 16 46 H 0.13 2.76 5.73 -52.49 -0.30 2.46 16 47 H 0.27 7.34 8.31 -40.82 -0.34 7.01 16 LS Contribution 351.68 15.07 5.30 5.30 Total: -1.00 -31.60 351.68 -9.01 -40.61 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -6.82 Total: 8.47 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: -2.44 Total: -19.14 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: 0.28 Total: -34.61 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.30 Total: -16.07 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.60 -9.01 -40.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117197037.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.855 kcal (2) G-P(sol) polarization free energy of solvation -31.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds