Wall clock time and date at job start Tue Mar 31 2020 12:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46510 * 2 1 4 4 C 1.53001 * 109.47529 * 119.99799 * 2 1 3 5 5 H 1.08997 * 109.57972 * 51.72401 * 4 2 1 6 6 C 1.53189 * 109.70093 * 291.36758 * 4 2 1 7 7 C 1.53047 * 109.31045 * 185.50516 * 6 4 2 8 8 C 1.53042 * 109.53667 * 61.36705 * 7 6 4 9 9 C 1.53194 * 109.31117 * 298.63502 * 8 7 6 10 10 N 1.46924 * 109.58660 * 172.00873 * 4 2 1 11 11 C 1.34780 * 120.63167 * 353.26001 * 10 4 2 12 12 O 1.21589 * 119.99628 * 6.37973 * 11 10 4 13 13 C 1.47536 * 120.00030 * 186.37913 * 11 10 4 14 14 C 1.39662 * 120.19530 * 19.84729 * 13 11 10 15 15 C 1.37832 * 119.91937 * 180.02562 * 14 13 11 16 16 C 1.38575 * 120.31809 * 359.97438 * 15 14 13 17 17 C 1.38023 * 120.40886 * 359.97438 * 16 15 14 18 18 C 1.38838 * 120.06577 * 359.76311 * 17 16 15 19 19 O 1.35520 * 120.16245 * 180.26016 * 18 17 16 20 20 C 1.34815 * 116.99637 * 6.25894 * 19 18 17 21 21 H 1.08003 * 120.00140 * 5.52294 * 20 19 18 22 22 C 1.38701 * 120.00024 * 185.50955 * 20 19 18 23 23 N 1.31524 * 119.99684 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00162 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.46823 * 90.00372 * 24 22 20 26 26 H 1.48500 * 109.47078 * 210.00370 * 24 22 20 27 27 H 1.48503 * 109.47128 * 330.00615 * 24 22 20 28 28 H 1.09002 * 109.47325 * 305.07293 * 1 2 3 29 29 H 1.08993 * 109.47312 * 65.07954 * 1 2 3 30 30 H 1.09001 * 109.46636 * 185.07932 * 1 2 3 31 31 H 1.08997 * 109.47158 * 240.00155 * 2 1 3 32 32 H 1.09009 * 109.46925 * 168.98520 * 3 2 1 33 33 H 1.09002 * 109.46920 * 288.97823 * 3 2 1 34 34 H 1.08994 * 109.47293 * 48.98198 * 3 2 1 35 35 H 1.09001 * 109.50224 * 305.45350 * 6 4 2 36 36 H 1.09001 * 109.50254 * 65.55593 * 6 4 2 37 37 H 1.09003 * 109.46075 * 181.38437 * 7 6 4 38 38 H 1.08994 * 109.45921 * 301.34905 * 7 6 4 39 39 H 1.08999 * 109.49739 * 58.58550 * 8 7 6 40 40 H 1.09000 * 109.49739 * 178.64989 * 8 7 6 41 41 H 1.09003 * 109.58866 * 294.84605 * 9 8 7 42 42 H 1.09003 * 109.58458 * 174.42096 * 9 8 7 43 43 H 1.07997 * 120.04331 * 0.02562 * 14 13 11 44 44 H 1.07994 * 119.83859 * 179.97438 * 15 14 13 45 45 H 1.08005 * 119.79747 * 180.02562 * 16 15 14 46 46 H 1.07999 * 119.96890 * 180.02562 * 17 16 15 47 47 H 0.97007 * 119.99965 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.5621 -1.6976 1.3281 6 6 1.7169 0.1110 2.4941 7 6 2.3495 -0.5483 3.7219 8 6 3.8698 -0.5933 3.5523 9 6 4.2174 -1.4334 2.3194 10 7 3.4967 -0.8915 1.1594 11 6 4.1583 -0.5623 0.0323 12 8 3.5705 -0.0128 -0.8792 13 6 5.5959 -0.8687 -0.0954 14 6 6.1832 -1.8364 0.7225 15 6 7.5268 -2.1177 0.5988 16 6 8.2993 -1.4451 -0.3346 17 6 7.7324 -0.4870 -1.1505 18 6 6.3794 -0.1944 -1.0436 19 8 5.8197 0.7422 -1.8473 20 6 6.5992 1.2614 -2.8170 21 1 7.5901 0.8652 -2.9834 22 6 6.1285 2.3041 -3.6013 23 7 4.9220 2.7867 -3.3985 24 14 7.2083 3.0230 -4.9454 25 1 6.9715 2.2903 -6.2152 26 1 6.8761 4.4582 -5.1325 27 1 8.6356 2.8917 -4.5569 28 1 -0.3634 0.5905 0.8411 29 1 -0.3633 0.4330 -0.9319 30 1 -0.3632 -1.0237 0.0910 31 1 1.8933 -0.5138 -0.8900 32 1 3.1121 1.4490 0.1964 33 1 1.8458 1.8965 -0.9718 34 1 1.5251 2.0099 0.7753 35 1 2.1188 1.1170 2.3738 36 1 0.6362 0.1639 2.6259 37 1 2.1004 0.0284 4.6127 38 1 1.9657 -1.5630 3.8274 39 1 4.2515 0.4193 3.4220 40 1 4.3215 -1.0412 4.4375 41 1 3.9171 -2.4680 2.4855 42 1 5.2910 -1.3873 2.1366 43 1 5.5854 -2.3637 1.4512 44 1 7.9797 -2.8660 1.2322 45 1 9.3513 -1.6725 -0.4247 46 1 8.3410 0.0327 -1.8758 47 1 4.5929 3.5162 -3.9467 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117197037.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:04 Heat of formation + Delta-G solvation = -0.808559 kcal Electronic energy + Delta-G solvation = -28516.975901 eV Core-core repulsion = 24860.021119 eV Total energy + Delta-G solvation = -3656.954782 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.06189 -40.46779 -38.28169 -38.11324 -36.18477 -34.33378 -33.79915 -31.90410 -30.81763 -30.32845 -28.03304 -27.40604 -26.56190 -24.95681 -23.98885 -23.25318 -21.76094 -21.31108 -19.93693 -19.84441 -18.47446 -17.67816 -16.92898 -16.58178 -16.47642 -16.12084 -15.99405 -15.76279 -15.56935 -15.37949 -15.06822 -14.69414 -14.44770 -14.38491 -14.01941 -13.74972 -13.58878 -13.53094 -13.29357 -13.01042 -12.93612 -12.71472 -12.57535 -12.46191 -12.32450 -12.15457 -11.89683 -11.69830 -11.60893 -11.50881 -11.38988 -11.28174 -10.93516 -10.79870 -9.78949 -9.61787 -9.25341 -8.98185 -8.44642 -6.13945 0.18413 0.72917 1.30371 1.41538 1.48693 2.09953 2.14896 2.24316 2.87362 3.23012 3.46837 3.65175 3.88910 3.95956 4.02573 4.09233 4.19638 4.27402 4.28788 4.29911 4.38667 4.45660 4.56512 4.62786 4.68706 4.70899 4.79204 4.81186 4.93600 4.97353 5.00277 5.06977 5.07907 5.11702 5.14746 5.19796 5.22337 5.29063 5.36945 5.46648 5.52489 5.57298 5.62077 5.66233 5.71689 5.95350 5.99756 6.19859 6.65847 6.95604 7.59308 7.81885 8.75669 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012855 B = 0.005370 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.605982 B = 5213.025171 C = 6936.251529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.092 4.092 3 C -0.098 4.098 4 C 0.157 3.843 5 H 0.087 0.913 6 C -0.132 4.132 7 C -0.113 4.113 8 C -0.133 4.133 9 C 0.058 3.942 10 N -0.608 5.608 11 C 0.539 3.461 12 O -0.536 6.536 13 C -0.239 4.239 14 C -0.066 4.066 15 C -0.200 4.200 16 C -0.046 4.046 17 C -0.259 4.259 18 C 0.147 3.853 19 O -0.191 6.191 20 C -0.423 4.423 21 H 0.101 0.899 22 C -0.020 4.020 23 N -0.903 5.903 24 Si 1.018 2.982 25 H -0.265 1.265 26 H -0.272 1.272 27 H -0.249 1.249 28 H 0.067 0.933 29 H 0.041 0.959 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.029 0.971 33 H 0.008 0.992 34 H 0.046 0.954 35 H 0.045 0.955 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.040 0.960 40 H 0.104 0.896 41 H 0.100 0.900 42 H 0.123 0.877 43 H 0.191 0.809 44 H 0.165 0.835 45 H 0.150 0.850 46 H 0.119 0.881 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.452 -11.104 16.069 19.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.111 4.111 3 C -0.155 4.155 4 C 0.055 3.945 5 H 0.105 0.895 6 C -0.170 4.170 7 C -0.150 4.150 8 C -0.171 4.171 9 C -0.062 4.062 10 N -0.342 5.342 11 C 0.330 3.670 12 O -0.414 6.414 13 C -0.244 4.244 14 C -0.083 4.083 15 C -0.218 4.218 16 C -0.064 4.064 17 C -0.278 4.278 18 C 0.093 3.907 19 O -0.094 6.094 20 C -0.499 4.499 21 H 0.119 0.881 22 C -0.219 4.219 23 N -0.539 5.539 24 Si 0.837 3.163 25 H -0.190 1.190 26 H -0.197 1.197 27 H -0.172 1.172 28 H 0.086 0.914 29 H 0.060 0.940 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.048 0.952 33 H 0.028 0.972 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.108 0.892 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.058 0.942 40 H 0.123 0.877 41 H 0.118 0.882 42 H 0.140 0.860 43 H 0.207 0.793 44 H 0.182 0.818 45 H 0.168 0.832 46 H 0.137 0.863 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.152 -10.531 15.495 18.858 hybrid contribution 0.432 1.140 -1.391 1.850 sum -1.720 -9.391 14.103 17.031 Atomic orbital electron populations 1.21895 0.94029 1.02352 1.01603 1.21535 0.95315 0.96039 0.98213 1.21656 0.99423 0.96376 0.98079 1.21357 0.79148 0.98841 0.95159 0.89548 1.22062 1.01862 0.98759 0.94287 1.21516 0.94692 1.01912 0.96895 1.21951 0.97201 0.99819 0.98156 1.23238 1.00026 0.98441 0.84522 1.47921 1.07665 1.65159 1.13482 1.18420 0.86923 0.78673 0.82953 1.90936 1.67587 1.40796 1.42121 1.19418 0.93714 1.06629 1.04632 1.22314 0.96534 0.94048 0.95405 1.21241 0.93723 1.04309 1.02563 1.21413 1.00705 0.91931 0.92397 1.21289 0.93943 1.05887 1.06714 1.20056 0.92494 0.88777 0.89403 1.84136 1.39374 1.47101 1.38756 1.21910 0.99871 1.17686 1.10390 0.88128 1.26652 0.98111 0.96010 1.01166 1.70301 1.18208 1.25458 1.39974 0.84613 0.77904 0.77413 0.76370 1.18985 1.19689 1.17190 0.91363 0.94024 0.91140 0.91687 0.95163 0.97227 0.93573 0.93636 0.89236 0.90619 0.89901 0.94152 0.87747 0.88249 0.85959 0.79293 0.81768 0.83211 0.86349 0.92222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.95 8.89 71.98 0.64 -3.31 16 2 C -0.09 -3.40 2.16 -10.79 -0.02 -3.43 16 3 C -0.10 -4.34 6.81 71.98 0.49 -3.85 16 4 C 0.16 4.57 2.63 44.97 0.12 4.68 16 5 H 0.09 2.10 8.12 -2.39 -0.02 2.08 16 6 C -0.13 -3.08 4.68 30.67 0.14 -2.93 16 7 C -0.11 -1.91 5.88 30.62 0.18 -1.73 16 8 C -0.13 -2.49 6.08 30.67 0.19 -2.30 16 9 C 0.06 1.27 4.70 86.36 0.41 1.68 16 10 N -0.61 -19.81 2.90 -798.75 -2.32 -22.13 16 11 C 0.54 24.26 6.47 86.70 0.56 24.82 16 12 O -0.54 -29.69 8.84 15.96 0.14 -29.55 16 13 C -0.24 -10.48 5.70 -19.99 -0.11 -10.59 16 14 C -0.07 -2.01 7.63 22.52 0.17 -1.84 16 15 C -0.20 -5.39 10.03 22.25 0.22 -5.17 16 16 C -0.05 -1.48 10.03 22.30 0.22 -1.25 16 17 C -0.26 -11.33 9.12 22.36 0.20 -11.13 16 18 C 0.15 7.67 6.64 22.91 0.15 7.82 16 19 O -0.19 -12.16 8.03 -0.12 0.00 -12.16 16 20 C -0.42 -25.84 9.44 67.93 0.64 -25.20 16 21 H 0.10 5.60 5.31 -2.91 -0.02 5.58 16 22 C -0.02 -1.21 5.49 84.85 0.47 -0.75 16 23 N -0.90 -59.18 13.67 21.62 0.30 -58.89 16 24 Si 1.02 45.02 29.55 68.60 2.03 47.05 16 25 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 26 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 27 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 28 H 0.07 1.62 7.04 -2.39 -0.02 1.60 16 29 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.07 1.63 8.13 -2.39 -0.02 1.61 16 31 H 0.07 3.01 5.81 -14.38 -0.08 2.93 16 32 H 0.03 1.55 5.45 -2.38 -0.01 1.54 16 33 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.05 1.72 6.86 -2.39 -0.02 1.71 16 35 H 0.04 1.32 6.27 -2.39 -0.01 1.31 16 36 H 0.09 1.73 7.10 -2.39 -0.02 1.71 16 37 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.10 1.52 8.04 -2.39 -0.02 1.51 16 42 H 0.12 2.79 3.48 -14.46 -0.05 2.74 16 43 H 0.19 4.11 4.38 -2.91 -0.01 4.10 16 44 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 45 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 46 H 0.12 5.31 5.73 -2.91 -0.02 5.30 16 47 H 0.27 16.22 8.31 -92.70 -0.77 15.45 16 Total: -1.00 -85.03 351.68 5.69 -79.34 By element: Atomic # 1 Polarization: 29.93 SS G_CDS: 0.87 Total: 30.80 kcal Atomic # 6 Polarization: -39.14 SS G_CDS: 4.67 Total: -34.47 kcal Atomic # 7 Polarization: -79.00 SS G_CDS: -2.02 Total: -81.02 kcal Atomic # 8 Polarization: -41.85 SS G_CDS: 0.14 Total: -41.71 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -85.03 5.69 -79.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117197037.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.533 kcal (2) G-P(sol) polarization free energy of solvation -85.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds