Wall clock time and date at job start Tue Mar 31 2020 12:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47246 * 2 1 4 4 C 1.53005 * 109.47174 * 119.99359 * 2 1 3 5 5 H 1.08996 * 109.70378 * 186.23299 * 4 2 1 6 6 C 1.53200 * 109.58473 * 306.59044 * 4 2 1 7 7 C 1.53038 * 109.30699 * 174.41948 * 6 4 2 8 8 C 1.53040 * 109.54097 * 298.62676 * 7 6 4 9 9 C 1.53194 * 109.30885 * 61.37123 * 8 7 6 10 10 N 1.46927 * 109.58168 * 65.87543 * 4 2 1 11 11 C 1.34771 * 120.63183 * 6.58311 * 10 4 2 12 12 O 1.21593 * 120.00357 * 5.52897 * 11 10 4 13 13 C 1.47539 * 120.00214 * 185.52856 * 11 10 4 14 14 C 1.39667 * 120.19368 * 35.33478 * 13 11 10 15 15 C 1.37824 * 119.92057 * 179.97438 * 14 13 11 16 16 C 1.38580 * 120.32435 * 0.02562 * 15 14 13 17 17 C 1.38033 * 120.39731 * 359.97438 * 16 15 14 18 18 C 1.38831 * 120.07160 * 359.73723 * 17 16 15 19 19 O 1.35523 * 120.16162 * 180.27698 * 18 17 16 20 20 C 1.34811 * 116.99883 * 354.17497 * 19 18 17 21 21 H 1.08005 * 119.99928 * 5.09412 * 20 19 18 22 22 C 1.38704 * 120.00156 * 185.08617 * 20 19 18 23 23 N 1.31517 * 119.99326 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00111 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47017 * 90.00015 * 24 22 20 26 26 H 1.48498 * 109.46731 * 210.00270 * 24 22 20 27 27 H 1.48500 * 109.46962 * 330.00179 * 24 22 20 28 28 H 1.08994 * 109.47662 * 309.40071 * 1 2 3 29 29 H 1.08999 * 109.47134 * 69.39670 * 1 2 3 30 30 H 1.08996 * 109.47312 * 189.39888 * 1 2 3 31 31 H 1.08991 * 109.47701 * 239.99515 * 2 1 3 32 32 H 1.09002 * 109.47299 * 184.45152 * 3 2 1 33 33 H 1.09005 * 109.46608 * 304.45033 * 3 2 1 34 34 H 1.09000 * 109.47148 * 64.44650 * 3 2 1 35 35 H 1.09001 * 109.49338 * 294.36720 * 6 4 2 36 36 H 1.09000 * 109.50055 * 54.43514 * 6 4 2 37 37 H 1.08993 * 109.46476 * 58.65229 * 7 6 4 38 38 H 1.09000 * 109.45578 * 178.62875 * 7 6 4 39 39 H 1.08996 * 109.50042 * 181.31482 * 8 7 6 40 40 H 1.08999 * 109.50295 * 301.39272 * 8 7 6 41 41 H 1.08998 * 109.58819 * 65.15197 * 9 8 7 42 42 H 1.08994 * 109.58810 * 185.43741 * 9 8 7 43 43 H 1.08001 * 120.04300 * 359.95046 * 14 13 11 44 44 H 1.07997 * 119.84261 * 179.97438 * 15 14 13 45 45 H 1.07994 * 119.80446 * 179.97438 * 16 15 14 46 46 H 1.07998 * 119.96162 * 180.02562 * 17 16 15 47 47 H 0.96998 * 119.99516 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2494 5 1 3.1242 -0.6279 1.3106 6 6 1.4000 -0.1028 2.4964 7 6 1.8046 -0.9154 3.7285 8 6 1.2941 -2.3510 3.5851 9 6 1.9328 -2.9948 2.3504 10 7 1.6707 -2.1417 1.1832 11 6 1.1019 -2.6524 0.0733 12 8 0.9814 -1.9625 -0.9207 13 6 0.6255 -4.0487 0.0641 14 6 0.0684 -4.6084 1.2161 15 6 -0.3754 -5.9131 1.2011 16 6 -0.2714 -6.6743 0.0478 17 6 0.2769 -6.1346 -1.0982 18 6 0.7237 -4.8201 -1.1033 19 8 1.2572 -4.2866 -2.2290 20 6 1.4374 -5.1183 -3.2746 21 1 1.0852 -6.1379 -3.2205 22 6 2.0750 -4.6647 -4.4198 23 7 2.5042 -3.4233 -4.4854 24 14 2.3240 -5.8170 -5.8688 25 1 1.1565 -5.7238 -6.7816 26 1 3.5571 -5.4318 -6.6012 27 1 2.4565 -7.2113 -5.3753 28 1 -0.3634 0.6522 0.7940 29 1 -0.3633 0.3616 -0.9619 30 1 -0.3634 -1.0138 0.1678 31 1 1.8934 -0.5138 -0.8898 32 1 3.1271 1.4436 -0.0798 33 1 1.6130 1.9788 -0.8475 34 1 1.7432 1.9329 0.9271 35 1 1.7436 0.9254 2.6098 36 1 0.3151 -0.1145 2.3924 37 1 2.8908 -0.9235 3.8177 38 1 1.3703 -0.4633 4.6202 39 1 1.5623 -2.9230 4.4733 40 1 0.2101 -2.3422 3.4716 41 1 3.0083 -3.0870 2.5015 42 1 1.5006 -3.9822 2.1883 43 1 -0.0142 -4.0196 2.1178 44 1 -0.8055 -6.3447 2.0927 45 1 -0.6214 -7.6959 0.0455 46 1 0.3541 -6.7340 -1.9933 47 1 2.9504 -3.1061 -5.2862 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117197039.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:09 Heat of formation + Delta-G solvation = -3.277364 kcal Electronic energy + Delta-G solvation = -28424.101982 eV Core-core repulsion = 24767.040144 eV Total energy + Delta-G solvation = -3657.061837 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.61865 -38.86282 -36.76243 -36.56224 -34.85334 -32.53868 -32.33226 -30.48598 -29.46479 -28.90907 -26.72666 -25.51065 -25.16606 -23.69898 -22.56337 -21.66861 -20.67950 -19.88706 -18.53379 -18.07885 -16.99336 -16.13467 -15.52245 -15.11999 -14.89381 -14.82866 -14.42265 -14.30988 -14.07810 -13.96274 -13.80006 -13.35487 -13.19674 -12.91908 -12.61384 -12.49844 -12.29960 -12.03769 -11.72526 -11.68208 -11.50889 -11.35841 -11.12356 -11.01856 -10.86744 -10.82668 -10.70191 -10.48600 -10.34482 -10.33368 -10.21029 -10.02239 -9.46005 -8.88289 -8.31217 -8.02221 -7.97628 -7.31417 -6.46216 -4.05798 1.75422 2.28892 3.11532 3.12037 3.16930 3.49164 3.64747 3.92959 4.53684 4.79585 4.88730 4.92259 5.06007 5.14609 5.15747 5.28094 5.43353 5.45602 5.50042 5.53420 5.60461 5.70279 5.71453 5.84255 5.85244 5.91931 5.99330 6.02333 6.04700 6.07405 6.13809 6.14231 6.23737 6.30981 6.33817 6.48955 6.55864 6.61501 6.69261 6.85672 6.94436 6.99272 7.04119 7.24532 7.28486 7.36318 7.68548 7.91677 8.07270 8.95065 9.09389 9.65731 10.68593 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013506 B = 0.005093 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.671001 B = 5496.045347 C = 7075.211755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.110 4.110 3 C -0.149 4.149 4 C 0.159 3.841 5 H 0.062 0.938 6 C -0.135 4.135 7 C -0.118 4.118 8 C -0.135 4.135 9 C 0.084 3.916 10 N -0.613 5.613 11 C 0.567 3.433 12 O -0.494 6.494 13 C -0.223 4.223 14 C -0.052 4.052 15 C -0.229 4.229 16 C -0.054 4.054 17 C -0.236 4.236 18 C 0.190 3.810 19 O -0.137 6.137 20 C -0.401 4.401 21 H 0.093 0.907 22 C 0.045 3.955 23 N -0.839 5.839 24 Si 0.940 3.060 25 H -0.272 1.272 26 H -0.277 1.277 27 H -0.267 1.267 28 H 0.030 0.970 29 H 0.047 0.953 30 H 0.059 0.941 31 H 0.128 0.872 32 H 0.048 0.952 33 H 0.053 0.947 34 H 0.045 0.955 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.112 0.888 43 H 0.125 0.875 44 H 0.109 0.891 45 H 0.110 0.890 46 H 0.131 0.869 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.476 2.162 14.534 14.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.128 4.128 3 C -0.207 4.207 4 C 0.056 3.944 5 H 0.080 0.920 6 C -0.173 4.173 7 C -0.155 4.155 8 C -0.174 4.174 9 C -0.039 4.039 10 N -0.349 5.349 11 C 0.358 3.642 12 O -0.370 6.370 13 C -0.228 4.228 14 C -0.070 4.070 15 C -0.248 4.248 16 C -0.072 4.072 17 C -0.256 4.256 18 C 0.131 3.869 19 O -0.036 6.036 20 C -0.477 4.477 21 H 0.111 0.889 22 C -0.163 4.163 23 N -0.471 5.471 24 Si 0.765 3.235 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.191 1.191 28 H 0.049 0.951 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.146 0.854 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.130 0.870 43 H 0.143 0.857 44 H 0.127 0.873 45 H 0.128 0.872 46 H 0.149 0.851 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.319 2.952 13.697 14.074 hybrid contribution 0.129 -0.694 -0.514 0.873 sum -1.189 2.258 13.184 13.428 Atomic orbital electron populations 1.21867 0.95207 1.01142 0.99798 1.21939 0.96757 0.94328 0.99751 1.21975 1.00469 0.97301 1.00927 1.21167 0.97806 0.80115 0.95289 0.91996 1.22100 1.01835 0.98942 0.94425 1.21504 1.00828 0.95424 0.97787 1.21929 1.00988 0.96526 0.97915 1.22285 1.00362 0.96356 0.84899 1.47868 1.63114 1.09025 1.14899 1.18086 0.77265 0.86630 0.82176 1.90790 1.54597 1.58664 1.32928 1.18887 1.15107 0.95144 0.93612 1.20994 0.95452 0.95044 0.95517 1.20495 1.10376 0.95290 0.98597 1.20891 0.95405 0.98364 0.92554 1.21153 1.08230 0.96257 0.99916 1.19231 0.90478 0.90613 0.86555 1.84078 1.66297 1.36114 1.17137 1.21434 1.39523 0.94709 0.92010 0.88933 1.25351 0.95696 0.96843 0.98367 1.70092 1.33963 1.14643 1.28424 0.85728 0.78369 0.79401 0.80030 1.19750 1.20172 1.19099 0.95106 0.93363 0.92254 0.85447 0.93305 0.92786 0.93596 0.91212 0.91070 0.92087 0.92196 0.91110 0.91581 0.92293 0.87048 0.85747 0.87254 0.87229 0.85129 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.15 7.12 37.16 0.26 -1.88 16 2 C -0.11 -1.89 2.16 -90.61 -0.20 -2.09 16 3 C -0.15 -2.10 9.06 37.16 0.34 -1.76 16 4 C 0.16 2.45 2.65 -67.59 -0.18 2.27 16 5 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 6 C -0.13 -1.63 4.68 -26.61 -0.12 -1.76 16 7 C -0.12 -1.21 5.88 -26.69 -0.16 -1.37 16 8 C -0.14 -1.43 5.77 -26.61 -0.15 -1.59 16 9 C 0.08 1.14 5.52 -3.71 -0.02 1.12 16 10 N -0.61 -10.44 2.91 -166.43 -0.48 -10.92 16 11 C 0.57 12.19 5.72 -12.47 -0.07 12.12 16 12 O -0.49 -12.38 9.97 -12.45 -0.12 -12.50 16 13 C -0.22 -4.77 5.42 -104.81 -0.57 -5.34 16 14 C -0.05 -0.89 7.37 -39.20 -0.29 -1.18 16 15 C -0.23 -3.69 10.03 -39.61 -0.40 -4.09 16 16 C -0.05 -0.94 10.03 -39.53 -0.40 -1.33 16 17 C -0.24 -5.03 9.16 -39.44 -0.36 -5.39 16 18 C 0.19 4.64 6.62 -38.60 -0.26 4.38 16 19 O -0.14 -3.97 8.40 -16.94 -0.14 -4.11 16 20 C -0.40 -11.22 9.49 30.90 0.29 -10.92 16 21 H 0.09 2.36 5.21 -52.48 -0.27 2.09 16 22 C 0.04 1.23 5.49 -17.51 -0.10 1.13 16 23 N -0.84 -24.96 13.67 55.48 0.76 -24.20 16 24 Si 0.94 20.45 29.55 -169.99 -5.02 15.43 16 25 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 26 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 27 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 28 H 0.03 0.45 6.78 -51.93 -0.35 0.10 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 1.16 5.35 -51.93 -0.28 0.88 16 31 H 0.13 2.82 5.59 -53.68 -0.30 2.52 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.05 0.55 6.56 -51.93 -0.34 0.21 16 35 H 0.07 0.76 6.81 -51.93 -0.35 0.40 16 36 H 0.07 0.92 6.24 -51.93 -0.32 0.60 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.72 7.63 -51.93 -0.40 0.33 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.11 1.57 3.60 -51.93 -0.19 1.38 16 43 H 0.12 1.77 5.18 -52.49 -0.27 1.50 16 44 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 45 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 46 H 0.13 2.75 5.64 -52.49 -0.30 2.46 16 47 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 352.15 15.07 5.31 5.31 Total: -1.00 -31.83 352.15 -8.82 -40.64 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -6.74 Total: 8.03 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: -2.37 Total: -17.67 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: 0.27 Total: -35.12 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.27 Total: -16.61 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.83 -8.82 -40.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117197039.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.365 kcal (2) G-P(sol) polarization free energy of solvation -31.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds