Wall clock time and date at job start Tue Mar 31 2020 12:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47246 * 2 1 4 4 C 1.53005 * 109.47174 * 119.99359 * 2 1 3 5 5 H 1.08996 * 109.70378 * 186.23299 * 4 2 1 6 6 C 1.53200 * 109.58473 * 306.59044 * 4 2 1 7 7 C 1.53038 * 109.30699 * 174.41948 * 6 4 2 8 8 C 1.53040 * 109.54097 * 298.62676 * 7 6 4 9 9 C 1.53194 * 109.30885 * 61.37123 * 8 7 6 10 10 N 1.46927 * 109.58168 * 65.87543 * 4 2 1 11 11 C 1.34771 * 120.63183 * 6.58311 * 10 4 2 12 12 O 1.21593 * 120.00357 * 5.52897 * 11 10 4 13 13 C 1.47539 * 120.00214 * 185.52856 * 11 10 4 14 14 C 1.39667 * 120.19368 * 35.33478 * 13 11 10 15 15 C 1.37824 * 119.92057 * 179.97438 * 14 13 11 16 16 C 1.38580 * 120.32435 * 0.02562 * 15 14 13 17 17 C 1.38033 * 120.39731 * 359.97438 * 16 15 14 18 18 C 1.38831 * 120.07160 * 359.73723 * 17 16 15 19 19 O 1.35523 * 120.16162 * 180.27698 * 18 17 16 20 20 C 1.34811 * 116.99883 * 354.17497 * 19 18 17 21 21 H 1.08005 * 119.99928 * 5.09412 * 20 19 18 22 22 C 1.38704 * 120.00156 * 185.08617 * 20 19 18 23 23 N 1.31517 * 119.99326 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00111 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47017 * 90.00015 * 24 22 20 26 26 H 1.48498 * 109.46731 * 210.00270 * 24 22 20 27 27 H 1.48500 * 109.46962 * 330.00179 * 24 22 20 28 28 H 1.08994 * 109.47662 * 309.40071 * 1 2 3 29 29 H 1.08999 * 109.47134 * 69.39670 * 1 2 3 30 30 H 1.08996 * 109.47312 * 189.39888 * 1 2 3 31 31 H 1.08991 * 109.47701 * 239.99515 * 2 1 3 32 32 H 1.09002 * 109.47299 * 184.45152 * 3 2 1 33 33 H 1.09005 * 109.46608 * 304.45033 * 3 2 1 34 34 H 1.09000 * 109.47148 * 64.44650 * 3 2 1 35 35 H 1.09001 * 109.49338 * 294.36720 * 6 4 2 36 36 H 1.09000 * 109.50055 * 54.43514 * 6 4 2 37 37 H 1.08993 * 109.46476 * 58.65229 * 7 6 4 38 38 H 1.09000 * 109.45578 * 178.62875 * 7 6 4 39 39 H 1.08996 * 109.50042 * 181.31482 * 8 7 6 40 40 H 1.08999 * 109.50295 * 301.39272 * 8 7 6 41 41 H 1.08998 * 109.58819 * 65.15197 * 9 8 7 42 42 H 1.08994 * 109.58810 * 185.43741 * 9 8 7 43 43 H 1.08001 * 120.04300 * 359.95046 * 14 13 11 44 44 H 1.07997 * 119.84261 * 179.97438 * 15 14 13 45 45 H 1.07994 * 119.80446 * 179.97438 * 16 15 14 46 46 H 1.07998 * 119.96162 * 180.02562 * 17 16 15 47 47 H 0.96998 * 119.99516 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2494 5 1 3.1242 -0.6279 1.3106 6 6 1.4000 -0.1028 2.4964 7 6 1.8046 -0.9154 3.7285 8 6 1.2941 -2.3510 3.5851 9 6 1.9328 -2.9948 2.3504 10 7 1.6707 -2.1417 1.1832 11 6 1.1019 -2.6524 0.0733 12 8 0.9814 -1.9625 -0.9207 13 6 0.6255 -4.0487 0.0641 14 6 0.0684 -4.6084 1.2161 15 6 -0.3754 -5.9131 1.2011 16 6 -0.2714 -6.6743 0.0478 17 6 0.2769 -6.1346 -1.0982 18 6 0.7237 -4.8201 -1.1033 19 8 1.2572 -4.2866 -2.2290 20 6 1.4374 -5.1183 -3.2746 21 1 1.0852 -6.1379 -3.2205 22 6 2.0750 -4.6647 -4.4198 23 7 2.5042 -3.4233 -4.4854 24 14 2.3240 -5.8170 -5.8688 25 1 1.1565 -5.7238 -6.7816 26 1 3.5571 -5.4318 -6.6012 27 1 2.4565 -7.2113 -5.3753 28 1 -0.3634 0.6522 0.7940 29 1 -0.3633 0.3616 -0.9619 30 1 -0.3634 -1.0138 0.1678 31 1 1.8934 -0.5138 -0.8898 32 1 3.1271 1.4436 -0.0798 33 1 1.6130 1.9788 -0.8475 34 1 1.7432 1.9329 0.9271 35 1 1.7436 0.9254 2.6098 36 1 0.3151 -0.1145 2.3924 37 1 2.8908 -0.9235 3.8177 38 1 1.3703 -0.4633 4.6202 39 1 1.5623 -2.9230 4.4733 40 1 0.2101 -2.3422 3.4716 41 1 3.0083 -3.0870 2.5015 42 1 1.5006 -3.9822 2.1883 43 1 -0.0142 -4.0196 2.1178 44 1 -0.8055 -6.3447 2.0927 45 1 -0.6214 -7.6959 0.0455 46 1 0.3541 -6.7340 -1.9933 47 1 2.9504 -3.1061 -5.2862 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117197039.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:09 Heat of formation + Delta-G solvation = -22.514450 kcal Electronic energy + Delta-G solvation = -28424.936164 eV Core-core repulsion = 24767.040144 eV Total energy + Delta-G solvation = -3657.896020 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.05866 -40.50572 -38.23827 -38.16535 -36.16819 -34.34357 -33.73822 -31.94585 -30.78491 -30.38559 -28.06493 -27.43673 -26.52587 -24.80455 -23.99671 -23.28206 -21.80924 -21.28078 -20.00587 -19.82756 -18.64970 -17.62955 -16.94572 -16.67726 -16.45061 -16.13401 -15.83094 -15.71226 -15.64485 -15.49436 -15.19262 -14.65460 -14.57388 -14.32386 -14.12757 -13.81290 -13.57225 -13.46388 -13.40863 -13.02675 -12.90523 -12.65998 -12.59314 -12.53262 -12.34806 -12.14688 -11.90192 -11.76393 -11.70829 -11.58319 -11.41858 -11.31988 -11.14012 -10.83056 -9.88838 -9.54175 -9.35995 -9.02622 -8.46660 -6.16719 0.19405 0.70531 1.30973 1.42029 1.49677 2.02707 2.14557 2.18950 2.84135 3.18180 3.43887 3.62542 3.88516 3.94057 4.03403 4.09159 4.12403 4.26097 4.27468 4.29297 4.36514 4.43162 4.52917 4.60055 4.68809 4.72211 4.76486 4.81327 4.94290 4.95501 4.97689 5.06849 5.07201 5.10596 5.12003 5.17082 5.20279 5.26719 5.34454 5.44157 5.49541 5.57216 5.58012 5.63404 5.69624 5.95234 5.98508 6.16697 6.61552 6.94139 7.53225 7.78757 8.74491 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013506 B = 0.005093 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.671001 B = 5496.045347 C = 7075.211755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.109 4.109 3 C -0.141 4.141 4 C 0.155 3.845 5 H 0.062 0.938 6 C -0.126 4.126 7 C -0.115 4.115 8 C -0.128 4.128 9 C 0.075 3.925 10 N -0.607 5.607 11 C 0.554 3.446 12 O -0.546 6.546 13 C -0.238 4.238 14 C -0.044 4.044 15 C -0.197 4.197 16 C -0.045 4.045 17 C -0.255 4.255 18 C 0.148 3.852 19 O -0.200 6.200 20 C -0.422 4.422 21 H 0.105 0.895 22 C -0.022 4.022 23 N -0.909 5.909 24 Si 1.020 2.980 25 H -0.264 1.264 26 H -0.272 1.272 27 H -0.247 1.247 28 H 0.064 0.936 29 H 0.023 0.977 30 H 0.032 0.968 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.046 0.954 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.107 0.893 43 H 0.162 0.838 44 H 0.164 0.836 45 H 0.153 0.847 46 H 0.122 0.878 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.587 0.681 19.440 19.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.128 4.128 3 C -0.198 4.198 4 C 0.052 3.948 5 H 0.080 0.920 6 C -0.164 4.164 7 C -0.153 4.153 8 C -0.166 4.166 9 C -0.047 4.047 10 N -0.341 5.341 11 C 0.345 3.655 12 O -0.425 6.425 13 C -0.243 4.243 14 C -0.062 4.062 15 C -0.215 4.215 16 C -0.063 4.063 17 C -0.274 4.274 18 C 0.094 3.906 19 O -0.104 6.104 20 C -0.498 4.498 21 H 0.122 0.878 22 C -0.220 4.220 23 N -0.546 5.546 24 Si 0.839 3.161 25 H -0.189 1.189 26 H -0.197 1.197 27 H -0.171 1.171 28 H 0.082 0.918 29 H 0.042 0.958 30 H 0.051 0.949 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.105 0.895 39 H 0.121 0.879 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.125 0.875 43 H 0.179 0.821 44 H 0.182 0.818 45 H 0.171 0.829 46 H 0.140 0.860 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.449 1.433 18.713 18.927 hybrid contribution 0.343 -0.308 -1.630 1.694 sum -2.106 1.124 17.083 17.249 Atomic orbital electron populations 1.21712 0.95459 1.00017 0.99521 1.21682 0.96541 0.96054 0.98522 1.21889 1.00575 0.95087 1.02274 1.21314 0.98068 0.79297 0.96108 0.91997 1.22048 1.01039 1.00102 0.93218 1.21523 1.01462 0.94817 0.97452 1.21925 1.00670 0.96983 0.96980 1.22570 1.01266 0.95932 0.84905 1.47956 1.61357 1.10203 1.14630 1.18373 0.77668 0.86725 0.82739 1.90823 1.56722 1.59872 1.35042 1.19361 1.15293 0.95300 0.94303 1.21440 0.93704 0.96069 0.95005 1.21187 1.06533 0.94150 0.99644 1.21400 0.93311 1.00370 0.91225 1.21296 1.09386 0.95155 1.01551 1.19984 0.91242 0.92698 0.86708 1.84077 1.69957 1.37575 1.18803 1.21953 1.39851 0.95373 0.92651 0.87768 1.26699 0.95177 0.98643 1.01529 1.70285 1.37226 1.17475 1.29597 0.84580 0.78410 0.77525 0.75591 1.18891 1.19701 1.17069 0.91765 0.95799 0.94854 0.91577 0.92923 0.93470 0.90409 0.89226 0.91655 0.91461 0.89506 0.87873 0.91460 0.91670 0.87522 0.82126 0.81820 0.82916 0.86039 0.92090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.04 7.12 71.98 0.51 -3.53 16 2 C -0.11 -4.01 2.16 -10.79 -0.02 -4.03 16 3 C -0.14 -3.99 9.06 71.98 0.65 -3.34 16 4 C 0.15 4.72 2.65 44.98 0.12 4.84 16 5 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 6 C -0.13 -2.66 4.68 30.67 0.14 -2.51 16 7 C -0.12 -1.81 5.88 30.62 0.18 -1.63 16 8 C -0.13 -2.09 5.77 30.67 0.18 -1.91 16 9 C 0.07 1.84 5.52 86.36 0.48 2.32 16 10 N -0.61 -20.82 2.91 -798.73 -2.32 -23.15 16 11 C 0.55 25.30 5.72 86.70 0.50 25.79 16 12 O -0.55 -30.30 9.97 12.95 0.13 -30.17 16 13 C -0.24 -10.49 5.42 -19.99 -0.11 -10.60 16 14 C -0.04 -1.39 7.37 22.52 0.17 -1.23 16 15 C -0.20 -5.35 10.03 22.25 0.22 -5.12 16 16 C -0.05 -1.42 10.03 22.30 0.22 -1.19 16 17 C -0.25 -10.99 9.16 22.36 0.20 -10.79 16 18 C 0.15 7.66 6.62 22.91 0.15 7.81 16 19 O -0.20 -12.76 8.40 -3.09 -0.03 -12.79 16 20 C -0.42 -25.62 9.49 67.93 0.64 -24.98 16 21 H 0.11 5.70 5.21 -2.91 -0.02 5.69 16 22 C -0.02 -1.30 5.49 84.85 0.47 -0.83 16 23 N -0.91 -59.44 13.67 21.62 0.30 -59.14 16 24 Si 1.02 44.55 29.55 68.60 2.03 46.58 16 25 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 26 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 27 H -0.25 -9.82 7.11 99.48 0.71 -9.12 16 28 H 0.06 1.86 6.78 -2.39 -0.02 1.84 16 29 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.03 1.37 5.35 -2.39 -0.01 1.36 16 31 H 0.07 3.30 5.59 -30.10 -0.17 3.13 16 32 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.08 1.71 6.56 -2.39 -0.02 1.69 16 35 H 0.09 1.57 6.81 -2.39 -0.02 1.55 16 36 H 0.06 1.48 6.24 -2.39 -0.01 1.47 16 37 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.07 1.13 7.63 -2.39 -0.02 1.11 16 41 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.11 2.69 3.60 -2.39 -0.01 2.68 16 43 H 0.16 3.87 5.18 -2.91 -0.02 3.85 16 44 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 45 H 0.15 3.54 8.06 -2.91 -0.02 3.51 16 46 H 0.12 5.33 5.64 -2.91 -0.02 5.32 16 47 H 0.27 16.22 8.31 -92.71 -0.77 15.45 16 Total: -1.00 -83.74 352.15 5.64 -78.11 By element: Atomic # 1 Polarization: 30.65 SS G_CDS: 0.83 Total: 31.48 kcal Atomic # 6 Polarization: -35.62 SS G_CDS: 4.71 Total: -30.92 kcal Atomic # 7 Polarization: -80.26 SS G_CDS: -2.03 Total: -82.29 kcal Atomic # 8 Polarization: -43.06 SS G_CDS: 0.10 Total: -42.96 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -83.74 5.64 -78.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117197039.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.593 kcal (2) G-P(sol) polarization free energy of solvation -83.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds