Wall clock time and date at job start Tue Mar 31 2020 12:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47066 * 2 1 4 4 C 1.33025 * 119.99499 * 91.21309 * 3 2 1 5 5 C 1.47058 * 119.99930 * 353.03055 * 4 3 2 6 6 O 1.21626 * 120.00411 * 353.69056 * 5 4 3 7 7 N 1.34780 * 119.99547 * 173.68402 * 5 4 3 8 8 C 1.39829 * 119.99722 * 184.67407 * 7 5 4 9 9 C 1.38956 * 120.04554 * 144.13383 * 8 7 5 10 10 C 1.38115 * 120.03617 * 180.02562 * 9 8 7 11 11 C 1.38207 * 120.13058 * 359.70392 * 10 9 8 12 12 C 1.38772 * 120.08795 * 0.54789 * 11 10 9 13 13 O 1.35899 * 120.02005 * 179.74685 * 12 11 10 14 14 C 1.42907 * 116.99880 * 359.72612 * 13 12 11 15 15 C 1.52996 * 109.46807 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.46994 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00047 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00142 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00272 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00170 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46813 * 60.00009 * 20 18 16 22 22 H 1.48493 * 109.47313 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47232 * 300.00205 * 20 18 16 24 24 C 1.38621 * 119.96086 * 359.47582 * 12 11 10 25 25 C 1.50700 * 120.00292 * 271.21769 * 3 2 1 26 26 C 1.53004 * 109.46608 * 274.99810 * 25 3 2 27 27 H 1.08996 * 109.47226 * 299.99419 * 1 2 3 28 28 H 1.08996 * 109.47603 * 59.99703 * 1 2 3 29 29 H 1.09004 * 109.47233 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46962 * 240.00565 * 2 1 3 31 31 H 1.08991 * 109.47593 * 120.00779 * 2 1 3 32 32 H 1.07994 * 119.99455 * 173.03060 * 4 3 2 33 33 H 0.96996 * 120.00587 * 4.68336 * 7 5 4 34 34 H 1.07995 * 119.97677 * 0.02562 * 9 8 7 35 35 H 1.08009 * 119.92861 * 180.02562 * 10 9 8 36 36 H 1.08001 * 119.95694 * 180.27949 * 11 10 9 37 37 H 1.09000 * 109.47013 * 299.99564 * 14 13 12 38 38 H 1.08996 * 109.47144 * 59.99957 * 14 13 12 39 39 H 1.08998 * 109.47151 * 299.99152 * 15 14 13 40 40 H 1.08996 * 109.47581 * 59.99885 * 15 14 13 41 41 H 0.96995 * 120.00570 * 179.97438 * 19 18 16 42 42 H 1.08003 * 120.05949 * 180.22841 * 24 12 11 43 43 H 1.08994 * 109.47045 * 34.99540 * 25 3 2 44 44 H 1.09005 * 109.47010 * 155.00293 * 25 3 2 45 45 H 1.09002 * 109.46911 * 299.99580 * 26 25 3 46 46 H 1.08993 * 109.47375 * 60.00311 * 26 25 3 47 47 H 1.09004 * 109.46378 * 179.97438 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2770 2.0397 1.1518 5 6 1.9142 1.3966 2.4236 6 8 1.2884 0.3537 2.4210 7 7 2.2754 1.9628 3.5921 8 6 2.0169 1.3036 4.7978 9 6 2.9214 1.3952 5.8488 10 6 2.6661 0.7435 7.0394 11 6 1.5084 0.0040 7.1912 12 6 0.6040 -0.0954 6.1434 13 8 -0.5314 -0.8272 6.2924 14 6 -0.7269 -1.4722 7.5525 15 6 -2.0484 -2.2429 7.5313 16 6 -2.2548 -2.9227 8.8604 17 1 -1.5170 -2.8160 9.6418 18 6 -3.3855 -3.6807 9.0788 19 7 -4.2843 -3.8102 8.1275 20 14 -3.6410 -4.5239 10.7260 21 1 -3.6798 -3.5031 11.8038 22 1 -4.9237 -5.2718 10.7056 23 1 -2.5224 -5.4675 10.9779 24 6 0.8567 0.5567 4.9465 25 6 2.2573 2.1405 -1.3048 26 6 3.6505 1.8030 -1.8396 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8898 32 1 2.7420 3.0144 1.1529 33 1 2.7146 2.8276 3.5968 34 1 3.8244 1.9764 5.7343 35 1 3.3701 0.8163 7.8553 36 1 1.3094 -0.5007 8.1250 37 1 0.0943 -2.1648 7.7373 38 1 -0.7553 -0.7230 8.3436 39 1 -2.8697 -1.5506 7.3464 40 1 -2.0195 -2.9921 6.7403 41 1 -5.0796 -4.3438 8.2809 42 1 0.1521 0.4835 4.1313 43 1 1.5046 1.8261 -2.0276 44 1 2.1804 3.2160 -1.1445 45 1 4.4033 2.1175 -1.1166 46 1 3.7275 0.7276 -1.9999 47 1 3.8131 2.3232 -2.7836 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122554580.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:21 Heat of formation + Delta-G solvation = -49.040331 kcal Electronic energy + Delta-G solvation = -25515.458167 eV Core-core repulsion = 21856.411898 eV Total energy + Delta-G solvation = -3659.046268 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.71510 -39.37751 -37.60090 -36.48169 -34.53582 -33.31751 -32.14153 -30.95450 -30.63298 -29.31217 -28.79598 -25.28058 -24.83778 -23.53847 -22.98452 -22.08553 -21.26928 -20.21109 -19.01262 -17.93097 -17.27182 -16.37472 -16.06276 -15.59557 -15.46385 -15.29300 -15.18289 -14.92367 -14.75309 -14.40654 -14.04580 -13.79927 -13.36097 -13.08711 -12.94788 -12.83103 -12.67102 -12.28798 -12.26110 -12.00489 -11.75460 -11.67016 -11.61929 -11.38759 -11.08438 -10.94846 -10.85710 -10.77171 -10.48575 -10.19974 -9.77651 -9.62650 -9.51211 -9.38611 -9.26649 -8.41694 -8.17902 -7.76765 -6.06516 -4.11270 0.99668 1.56203 1.69462 2.94057 3.09067 3.31037 3.35237 3.37149 3.89651 4.03002 4.33432 4.41329 4.45293 4.76063 4.84902 4.88662 5.04845 5.11775 5.21398 5.24259 5.29489 5.40581 5.41432 5.44526 5.47834 5.49411 5.54484 5.70872 5.74889 5.80623 5.93812 6.04465 6.08234 6.09020 6.16200 6.31683 6.37467 6.42041 6.46617 6.58298 6.64725 6.80158 7.05213 7.33825 7.55459 7.69205 7.85530 8.07924 8.12436 8.27900 8.94155 9.52636 11.05016 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017824 B = 0.002361 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.520817 B =11857.447595 C =13225.607794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.108 4.108 3 C -0.014 4.014 4 C -0.234 4.234 5 C 0.540 3.460 6 O -0.505 6.505 7 N -0.671 5.671 8 C 0.177 3.823 9 C -0.197 4.197 10 C -0.063 4.063 11 C -0.227 4.227 12 C 0.162 3.838 13 O -0.312 6.312 14 C 0.065 3.935 15 C 0.025 3.975 16 C -0.526 4.526 17 H 0.058 0.942 18 C 0.060 3.940 19 N -0.889 5.889 20 Si 0.899 3.101 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.276 1.276 24 C -0.162 4.162 25 C -0.098 4.098 26 C -0.147 4.147 27 H 0.064 0.936 28 H 0.043 0.957 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.104 0.896 32 H 0.127 0.873 33 H 0.409 0.591 34 H 0.120 0.880 35 H 0.124 0.876 36 H 0.131 0.869 37 H 0.051 0.949 38 H 0.051 0.949 39 H 0.028 0.972 40 H 0.028 0.972 41 H 0.264 0.736 42 H 0.144 0.856 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.057 0.943 46 H 0.059 0.941 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.908 15.675 -16.766 29.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.145 4.145 3 C -0.015 4.015 4 C -0.255 4.255 5 C 0.332 3.668 6 O -0.382 6.382 7 N -0.315 5.315 8 C 0.083 3.917 9 C -0.217 4.217 10 C -0.082 4.082 11 C -0.246 4.246 12 C 0.114 3.886 13 O -0.225 6.225 14 C -0.009 4.009 15 C -0.012 4.012 16 C -0.565 4.565 17 H 0.076 0.924 18 C -0.142 4.142 19 N -0.527 5.527 20 Si 0.727 3.273 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.201 1.201 24 C -0.183 4.183 25 C -0.136 4.136 26 C -0.205 4.205 27 H 0.083 0.917 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.122 0.878 32 H 0.145 0.855 33 H 0.244 0.756 34 H 0.138 0.862 35 H 0.142 0.858 36 H 0.149 0.851 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.073 0.927 42 H 0.162 0.838 43 H 0.099 0.901 44 H 0.094 0.906 45 H 0.076 0.924 46 H 0.078 0.922 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 17.119 14.803 -17.002 28.307 hybrid contribution 0.247 0.056 1.171 1.198 sum 17.366 14.859 -15.831 27.803 Atomic orbital electron populations 1.21534 0.93790 1.02194 1.01456 1.21052 0.97400 0.92268 1.03761 1.22636 0.89026 0.95795 0.94078 1.22238 1.09337 1.02441 0.91520 1.18714 0.79510 0.84599 0.84018 1.90811 1.37886 1.22693 1.86821 1.43347 1.60973 1.22822 1.04374 1.17288 0.93153 0.95850 0.85405 1.20636 0.99755 1.06936 0.94398 1.20647 0.96037 0.94985 0.96489 1.21382 0.96935 1.06234 1.00038 1.18994 0.86394 0.90199 0.92984 1.86193 1.36345 1.60928 1.39040 1.23339 1.01674 0.94685 0.81193 1.19121 0.89208 0.94887 0.97992 1.20934 1.06001 1.31065 0.98454 0.92412 1.24996 0.95772 0.96353 0.97114 1.69968 1.10248 1.39814 1.32704 0.86543 0.77493 0.79594 0.83704 1.20113 1.21138 1.20107 1.20409 0.98000 1.02468 0.97386 1.20785 0.98608 0.99952 0.94209 1.21725 0.95552 1.02187 1.01009 0.91663 0.93789 0.92310 0.92077 0.87768 0.85542 0.75558 0.86217 0.85796 0.85128 0.93095 0.93089 0.95397 0.95356 0.92666 0.83834 0.90135 0.90636 0.92383 0.92238 0.92068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.46 9.43 37.16 0.35 -1.11 16 2 C -0.11 -1.11 5.33 -27.88 -0.15 -1.26 16 3 C -0.01 -0.11 4.62 -101.16 -0.47 -0.58 16 4 C -0.23 -2.02 9.60 -37.82 -0.36 -2.38 16 5 C 0.54 6.46 7.45 -12.68 -0.09 6.36 16 6 O -0.51 -7.84 9.07 5.25 0.05 -7.79 16 7 N -0.67 -7.19 5.33 -10.96 -0.06 -7.25 16 8 C 0.18 2.46 6.28 -83.74 -0.53 1.94 16 9 C -0.20 -2.42 9.96 -39.36 -0.39 -2.81 16 10 C -0.06 -0.83 10.03 -39.64 -0.40 -1.23 16 11 C -0.23 -3.68 9.04 -39.40 -0.36 -4.03 16 12 C 0.16 3.05 6.68 -39.24 -0.26 2.79 16 13 O -0.31 -6.88 10.13 -19.42 -0.20 -7.08 16 14 C 0.07 1.45 4.68 37.16 0.17 1.63 16 15 C 0.03 0.68 5.34 -27.88 -0.15 0.53 16 16 C -0.53 -14.96 9.11 -34.44 -0.31 -15.27 16 17 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 19 N -0.89 -26.94 13.29 55.43 0.74 -26.20 16 20 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 24 C -0.16 -2.82 8.63 -39.24 -0.34 -3.16 16 25 C -0.10 -0.57 6.10 -27.88 -0.17 -0.74 16 26 C -0.15 -0.75 9.89 37.16 0.37 -0.38 16 27 H 0.06 0.86 6.84 -51.93 -0.36 0.50 16 28 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 31 H 0.10 1.35 5.61 -51.93 -0.29 1.06 16 32 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 33 H 0.41 2.81 8.81 -40.82 -0.36 2.45 16 34 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 35 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 36 H 0.13 2.06 6.29 -52.49 -0.33 1.73 16 37 H 0.05 1.08 7.67 -51.93 -0.40 0.68 16 38 H 0.05 1.07 7.65 -51.93 -0.40 0.67 16 39 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.14 2.70 6.28 -52.48 -0.33 2.37 16 43 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.08 0.36 8.03 -51.93 -0.42 -0.05 16 45 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 LS Contribution 386.98 15.07 5.83 5.83 Total: -1.00 -32.92 386.98 -9.34 -42.26 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -7.49 Total: 1.74 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -3.18 Total: -18.07 kcal Atomic # 7 Polarization: -34.13 SS G_CDS: 0.68 Total: -33.45 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.15 Total: -14.87 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.92 -9.34 -42.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122554580.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.779 kcal (2) G-P(sol) polarization free energy of solvation -32.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds