Wall clock time and date at job start Tue Mar 31 2020 12:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47066 * 2 1 4 4 C 1.33025 * 119.99499 * 91.21309 * 3 2 1 5 5 C 1.47058 * 119.99930 * 353.03055 * 4 3 2 6 6 O 1.21626 * 120.00411 * 353.69056 * 5 4 3 7 7 N 1.34780 * 119.99547 * 173.68402 * 5 4 3 8 8 C 1.39829 * 119.99722 * 184.67407 * 7 5 4 9 9 C 1.38956 * 120.04554 * 144.13383 * 8 7 5 10 10 C 1.38115 * 120.03617 * 180.02562 * 9 8 7 11 11 C 1.38207 * 120.13058 * 359.70392 * 10 9 8 12 12 C 1.38772 * 120.08795 * 0.54789 * 11 10 9 13 13 O 1.35899 * 120.02005 * 179.74685 * 12 11 10 14 14 C 1.42907 * 116.99880 * 359.72612 * 13 12 11 15 15 C 1.52996 * 109.46807 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.46994 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00047 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00142 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00272 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00170 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46813 * 60.00009 * 20 18 16 22 22 H 1.48493 * 109.47313 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47232 * 300.00205 * 20 18 16 24 24 C 1.38621 * 119.96086 * 359.47582 * 12 11 10 25 25 C 1.50700 * 120.00292 * 271.21769 * 3 2 1 26 26 C 1.53004 * 109.46608 * 274.99810 * 25 3 2 27 27 H 1.08996 * 109.47226 * 299.99419 * 1 2 3 28 28 H 1.08996 * 109.47603 * 59.99703 * 1 2 3 29 29 H 1.09004 * 109.47233 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46962 * 240.00565 * 2 1 3 31 31 H 1.08991 * 109.47593 * 120.00779 * 2 1 3 32 32 H 1.07994 * 119.99455 * 173.03060 * 4 3 2 33 33 H 0.96996 * 120.00587 * 4.68336 * 7 5 4 34 34 H 1.07995 * 119.97677 * 0.02562 * 9 8 7 35 35 H 1.08009 * 119.92861 * 180.02562 * 10 9 8 36 36 H 1.08001 * 119.95694 * 180.27949 * 11 10 9 37 37 H 1.09000 * 109.47013 * 299.99564 * 14 13 12 38 38 H 1.08996 * 109.47144 * 59.99957 * 14 13 12 39 39 H 1.08998 * 109.47151 * 299.99152 * 15 14 13 40 40 H 1.08996 * 109.47581 * 59.99885 * 15 14 13 41 41 H 0.96995 * 120.00570 * 179.97438 * 19 18 16 42 42 H 1.08003 * 120.05949 * 180.22841 * 24 12 11 43 43 H 1.08994 * 109.47045 * 34.99540 * 25 3 2 44 44 H 1.09005 * 109.47010 * 155.00293 * 25 3 2 45 45 H 1.09002 * 109.46911 * 299.99580 * 26 25 3 46 46 H 1.08993 * 109.47375 * 60.00311 * 26 25 3 47 47 H 1.09004 * 109.46378 * 179.97438 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2770 2.0397 1.1518 5 6 1.9142 1.3966 2.4236 6 8 1.2884 0.3537 2.4210 7 7 2.2754 1.9628 3.5921 8 6 2.0169 1.3036 4.7978 9 6 2.9214 1.3952 5.8488 10 6 2.6661 0.7435 7.0394 11 6 1.5084 0.0040 7.1912 12 6 0.6040 -0.0954 6.1434 13 8 -0.5314 -0.8272 6.2924 14 6 -0.7269 -1.4722 7.5525 15 6 -2.0484 -2.2429 7.5313 16 6 -2.2548 -2.9227 8.8604 17 1 -1.5170 -2.8160 9.6418 18 6 -3.3855 -3.6807 9.0788 19 7 -4.2843 -3.8102 8.1275 20 14 -3.6410 -4.5239 10.7260 21 1 -3.6798 -3.5031 11.8038 22 1 -4.9237 -5.2718 10.7056 23 1 -2.5224 -5.4675 10.9779 24 6 0.8567 0.5567 4.9465 25 6 2.2573 2.1405 -1.3048 26 6 3.6505 1.8030 -1.8396 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8898 32 1 2.7420 3.0144 1.1529 33 1 2.7146 2.8276 3.5968 34 1 3.8244 1.9764 5.7343 35 1 3.3701 0.8163 7.8553 36 1 1.3094 -0.5007 8.1250 37 1 0.0943 -2.1648 7.7373 38 1 -0.7553 -0.7230 8.3436 39 1 -2.8697 -1.5506 7.3464 40 1 -2.0195 -2.9921 6.7403 41 1 -5.0796 -4.3438 8.2809 42 1 0.1521 0.4835 4.1313 43 1 1.5046 1.8261 -2.0276 44 1 2.1804 3.2160 -1.1445 45 1 4.4033 2.1175 -1.1166 46 1 3.7275 0.7276 -1.9999 47 1 3.8131 2.3232 -2.7836 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122554580.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:20 Heat of formation + Delta-G solvation = -68.240188 kcal Electronic energy + Delta-G solvation = -25516.290735 eV Core-core repulsion = 21856.411898 eV Total energy + Delta-G solvation = -3659.878837 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.75321 -40.66988 -38.77639 -37.37103 -35.71231 -35.34175 -32.80660 -32.60858 -31.70114 -30.74112 -29.85258 -27.04042 -25.85821 -24.23490 -24.15729 -23.53880 -22.62297 -21.50826 -20.00441 -19.17051 -18.31533 -18.12639 -17.20105 -16.99006 -16.87830 -16.71463 -16.42656 -16.11890 -15.72994 -15.57653 -14.83547 -14.63768 -14.42159 -14.34249 -14.28486 -14.24529 -13.85245 -13.48543 -13.35881 -13.20385 -12.95120 -12.73574 -12.65879 -12.62703 -12.58123 -12.28715 -12.12795 -11.85838 -11.72906 -11.61219 -11.59611 -11.43574 -11.15000 -10.63226 -10.46143 -10.12527 -9.38797 -8.99654 -8.27546 -6.42226 0.09829 0.48212 0.55358 1.39615 1.44584 1.52524 1.99998 2.19581 2.31951 2.54799 2.84536 3.06292 3.67935 3.76870 3.91637 4.13385 4.17897 4.21294 4.24724 4.25995 4.28549 4.40714 4.41525 4.45547 4.57659 4.58432 4.64896 4.70151 4.76821 4.81014 4.93758 5.01543 5.11639 5.18752 5.27431 5.29170 5.32462 5.38679 5.38979 5.42693 5.43141 5.51815 5.53864 5.66418 5.67426 5.93602 6.05543 6.50089 6.55908 6.72378 7.21289 7.27925 8.85664 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017824 B = 0.002361 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.520817 B =11857.447595 C =13225.607794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.109 4.109 3 C -0.012 4.012 4 C -0.234 4.234 5 C 0.529 3.471 6 O -0.549 6.549 7 N -0.657 5.657 8 C 0.179 3.821 9 C -0.176 4.176 10 C -0.054 4.054 11 C -0.236 4.236 12 C 0.122 3.878 13 O -0.346 6.346 14 C 0.085 3.915 15 C 0.028 3.972 16 C -0.546 4.546 17 H 0.074 0.926 18 C -0.002 4.002 19 N -0.933 5.933 20 Si 0.980 3.020 21 H -0.262 1.262 22 H -0.282 1.282 23 H -0.263 1.263 24 C -0.185 4.185 25 C -0.093 4.093 26 C -0.146 4.146 27 H 0.037 0.963 28 H 0.065 0.935 29 H 0.046 0.954 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.166 0.834 33 H 0.431 0.569 34 H 0.167 0.833 35 H 0.165 0.835 36 H 0.132 0.868 37 H 0.060 0.940 38 H 0.064 0.936 39 H -0.004 1.004 40 H -0.006 1.006 41 H 0.267 0.733 42 H 0.114 0.886 43 H 0.084 0.916 44 H 0.093 0.907 45 H 0.060 0.940 46 H 0.050 0.950 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.253 17.849 -16.189 32.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.146 4.146 3 C -0.014 4.014 4 C -0.254 4.254 5 C 0.322 3.678 6 O -0.429 6.429 7 N -0.303 5.303 8 C 0.084 3.916 9 C -0.196 4.196 10 C -0.072 4.072 11 C -0.255 4.255 12 C 0.076 3.924 13 O -0.260 6.260 14 C 0.011 3.989 15 C -0.010 4.010 16 C -0.584 4.584 17 H 0.092 0.908 18 C -0.200 4.200 19 N -0.572 5.572 20 Si 0.803 3.197 21 H -0.186 1.186 22 H -0.208 1.208 23 H -0.187 1.187 24 C -0.206 4.206 25 C -0.130 4.130 26 C -0.203 4.203 27 H 0.056 0.944 28 H 0.084 0.916 29 H 0.065 0.935 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.183 0.817 33 H 0.271 0.729 34 H 0.184 0.816 35 H 0.183 0.817 36 H 0.149 0.851 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.015 0.985 40 H 0.012 0.988 41 H 0.076 0.924 42 H 0.132 0.868 43 H 0.103 0.897 44 H 0.112 0.888 45 H 0.079 0.921 46 H 0.070 0.930 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 20.512 17.034 -16.438 31.323 hybrid contribution -0.721 -0.554 0.851 1.245 sum 19.791 16.481 -15.587 30.104 Atomic orbital electron populations 1.21479 0.94763 1.01357 1.01057 1.20959 0.96599 0.94043 1.02970 1.22813 0.88208 0.94701 0.95649 1.22384 1.09786 1.03743 0.89501 1.19444 0.78757 0.84198 0.85362 1.90827 1.39771 1.24837 1.87455 1.43282 1.60521 1.23466 1.03051 1.17439 0.92073 0.94960 0.87090 1.21141 1.00128 1.05454 0.92858 1.21129 0.95077 0.93096 0.97937 1.21519 0.97708 1.07139 0.99163 1.19299 0.86494 0.91829 0.94804 1.86097 1.38877 1.62386 1.38675 1.22888 0.99102 0.94824 0.82106 1.18971 0.91062 0.93935 0.96991 1.21363 1.06699 1.31305 0.99016 0.90828 1.26120 0.95242 0.96980 1.01656 1.70131 1.10935 1.40713 1.35397 0.85277 0.77684 0.78570 0.78161 1.18610 1.20780 1.18749 1.20373 0.99466 1.04410 0.96361 1.20828 0.99191 1.00574 0.92453 1.21729 0.94976 1.01892 1.01752 0.94431 0.91571 0.93497 0.90479 0.90887 0.81671 0.72948 0.81559 0.81740 0.85051 0.92133 0.91733 0.98527 0.98780 0.92427 0.86764 0.89727 0.88814 0.92118 0.93040 0.90650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 9.43 71.98 0.68 -2.38 16 2 C -0.11 -2.31 5.33 29.85 0.16 -2.15 16 3 C -0.01 -0.19 4.62 -17.61 -0.08 -0.27 16 4 C -0.23 -3.60 9.60 23.42 0.22 -3.37 16 5 C 0.53 12.62 7.45 86.56 0.64 13.27 16 6 O -0.55 -18.35 9.07 -4.11 -0.04 -18.39 16 7 N -0.66 -13.05 5.33 -306.82 -1.63 -14.68 16 8 C 0.18 4.82 6.28 38.17 0.24 5.06 16 9 C -0.18 -3.67 9.96 22.41 0.22 -3.45 16 10 C -0.05 -1.25 10.03 22.23 0.22 -1.02 16 11 C -0.24 -7.55 9.04 22.39 0.20 -7.35 16 12 C 0.12 4.83 6.68 22.49 0.15 4.98 16 13 O -0.35 -16.53 10.13 -92.42 -0.94 -17.46 16 14 C 0.08 4.00 4.68 71.98 0.34 4.34 16 15 C 0.03 1.60 5.34 29.85 0.16 1.76 16 16 C -0.55 -31.90 9.11 25.60 0.23 -31.67 16 17 H 0.07 3.97 7.74 -2.91 -0.02 3.94 16 18 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 19 N -0.93 -58.66 13.29 21.45 0.28 -58.38 16 20 Si 0.98 44.52 29.54 68.60 2.03 46.55 16 21 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 22 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 23 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 24 C -0.18 -6.82 8.63 22.49 0.19 -6.63 16 25 C -0.09 -0.83 6.10 29.85 0.18 -0.65 16 26 C -0.15 -1.09 9.89 71.98 0.71 -0.38 16 27 H 0.04 1.08 6.84 -2.39 -0.02 1.07 16 28 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 30 H 0.08 1.34 8.13 -2.38 -0.02 1.32 16 31 H 0.07 2.05 5.61 -2.39 -0.01 2.03 16 32 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16 33 H 0.43 4.49 8.81 -92.71 -0.82 3.67 16 34 H 0.17 1.99 8.06 -2.91 -0.02 1.97 16 35 H 0.17 2.50 8.06 -2.91 -0.02 2.48 16 36 H 0.13 4.09 6.29 -2.91 -0.02 4.07 16 37 H 0.06 2.67 7.67 -2.39 -0.02 2.65 16 38 H 0.06 2.80 7.65 -2.39 -0.02 2.78 16 39 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 40 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 41 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 42 H 0.11 4.81 6.28 -2.91 -0.02 4.79 16 43 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.09 0.55 8.03 -2.38 -0.02 0.53 16 45 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 46 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 47 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 Total: -1.00 -78.74 386.98 4.79 -73.95 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: 0.14 Total: 17.94 kcal Atomic # 6 Polarization: -34.47 SS G_CDS: 4.95 Total: -29.52 kcal Atomic # 7 Polarization: -71.71 SS G_CDS: -1.35 Total: -73.06 kcal Atomic # 8 Polarization: -34.88 SS G_CDS: -0.97 Total: -35.85 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -78.74 4.79 -73.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122554580.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.705 kcal (2) G-P(sol) polarization free energy of solvation -78.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds