Wall clock time and date at job start Tue Mar 31 2020 11:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46955 * 2 1 4 4 C 1.53002 * 109.46813 * 120.00233 * 2 1 3 5 5 C 1.53002 * 109.47149 * 174.89242 * 4 2 1 6 6 H 1.09006 * 109.58450 * 63.82767 * 5 4 2 7 7 C 1.53195 * 109.58280 * 303.55419 * 5 4 2 8 8 C 1.53073 * 109.29033 * 185.71764 * 7 5 4 9 9 C 1.53043 * 109.66116 * 61.15333 * 8 7 5 10 10 C 1.53194 * 109.30915 * 298.69777 * 9 8 7 11 11 N 1.46923 * 109.58885 * 184.11604 * 5 4 2 12 12 S 1.65602 * 120.63135 * 353.41912 * 11 5 4 13 13 O 1.42098 * 104.27730 * 195.68452 * 12 11 5 14 14 O 1.42101 * 104.27492 * 323.53936 * 12 11 5 15 15 C 1.81403 * 104.45033 * 79.60891 * 12 11 5 16 16 C 1.52997 * 109.46836 * 179.97438 * 15 12 11 17 17 C 1.52997 * 109.46873 * 180.02562 * 16 15 12 18 18 C 1.50704 * 109.47490 * 180.02562 * 17 16 15 19 19 H 1.08005 * 119.99392 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00394 * 180.02562 * 18 17 16 21 21 N 1.31517 * 119.99698 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00089 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47047 * 59.99831 * 22 20 18 24 24 H 1.48494 * 109.47272 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47360 * 300.00014 * 22 20 18 26 26 H 1.09003 * 109.46849 * 299.99771 * 1 2 3 27 27 H 1.08995 * 109.46867 * 59.99638 * 1 2 3 28 28 H 1.08998 * 109.47026 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.46773 * 239.99558 * 2 1 3 30 30 H 1.09000 * 109.47429 * 65.07652 * 3 2 1 31 31 H 1.09005 * 109.46755 * 185.07251 * 3 2 1 32 32 H 1.08995 * 109.47537 * 305.06942 * 3 2 1 33 33 H 1.09009 * 109.46985 * 294.88870 * 4 2 1 34 34 H 1.08997 * 109.47580 * 54.88512 * 4 2 1 35 35 H 1.09003 * 109.49528 * 305.52682 * 7 5 4 36 36 H 1.08997 * 109.50002 * 65.62547 * 7 5 4 37 37 H 1.08999 * 109.35147 * 301.12322 * 8 7 5 38 38 H 1.09008 * 109.43802 * 181.22854 * 8 7 5 39 39 H 1.08996 * 109.50078 * 178.74438 * 9 8 7 40 40 H 1.09004 * 109.52404 * 58.66229 * 9 8 7 41 41 H 1.09004 * 109.58557 * 294.84681 * 10 9 8 42 42 H 1.09003 * 109.58646 * 174.42293 * 10 9 8 43 43 H 1.08997 * 109.47236 * 300.00475 * 15 12 11 44 44 H 1.08998 * 109.46501 * 60.00244 * 15 12 11 45 45 H 1.08997 * 109.47750 * 300.00349 * 16 15 12 46 46 H 1.09001 * 109.46760 * 60.00645 * 16 15 12 47 47 H 1.09005 * 109.47697 * 300.00407 * 17 16 15 48 48 H 1.08998 * 109.47305 * 60.00272 * 17 16 15 49 49 H 0.97002 * 119.99479 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5646 -0.8335 1.1868 6 1 4.0055 0.1631 1.2084 7 6 3.9743 -1.5483 -0.1048 8 6 5.4867 -1.7842 -0.0942 9 6 5.8608 -2.6739 1.0935 10 6 5.4726 -1.9686 2.3968 11 7 4.0487 -1.6114 2.3353 12 16 3.0093 -2.0773 3.5373 13 8 3.8609 -2.4550 4.6102 14 8 2.1098 -0.9847 3.6657 15 6 2.1559 -3.5281 2.8607 16 6 1.1564 -4.0580 3.8907 17 6 0.4371 -5.2820 3.3203 18 6 -0.5480 -5.8038 4.3344 19 1 -0.6510 -5.3113 5.2901 20 6 -1.3176 -6.9098 4.0423 21 7 -1.1925 -7.5092 2.8784 22 14 -2.5381 -7.5569 5.2997 23 1 -3.5331 -6.5000 5.6132 24 1 -3.2363 -8.7448 4.7461 25 1 -1.8157 -7.9399 6.5393 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.7528 1.9294 0.9319 31 1 3.1263 1.4438 -0.0909 32 1 1.6045 1.9819 -0.8410 33 1 1.7533 -0.1573 2.1369 34 1 1.6038 -1.7191 1.2963 35 1 3.4590 -2.5067 -0.1694 36 1 3.7060 -0.9318 -0.9627 37 1 6.0010 -0.8271 -0.0072 38 1 5.7841 -2.2733 -1.0220 39 1 6.9350 -2.8585 1.0858 40 1 5.3282 -3.6222 1.0204 41 1 6.0711 -1.0654 2.5158 42 1 5.6454 -2.6376 3.2399 43 1 1.6260 -3.2464 1.9509 44 1 2.8858 -4.3042 2.6305 45 1 1.6867 -4.3399 4.8003 46 1 0.4265 -3.2820 4.1212 47 1 -0.0933 -5.0007 2.4105 48 1 1.1672 -6.0579 3.0899 49 1 -1.7342 -8.2871 2.6728 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129269957.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:00 Heat of formation + Delta-G solvation = -119.809112 kcal Electronic energy + Delta-G solvation = -26623.633029 eV Core-core repulsion = 23096.961947 eV Total energy + Delta-G solvation = -3526.671082 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.22756 -38.46787 -37.10313 -36.78337 -36.48984 -34.20521 -33.46519 -32.21904 -29.72826 -27.96315 -27.67167 -25.78336 -24.93599 -23.56702 -22.41710 -21.37456 -20.63549 -19.86922 -18.71410 -18.22447 -17.60286 -17.15001 -16.51157 -16.18513 -16.15020 -15.68234 -15.46597 -15.20795 -14.85779 -14.56106 -14.47647 -14.38759 -14.18675 -14.10568 -13.57710 -13.26367 -13.18093 -13.07880 -13.03928 -12.91252 -12.78803 -12.70950 -12.67244 -12.40415 -12.19927 -12.16873 -11.88060 -11.82493 -11.65524 -11.56274 -11.46347 -11.37715 -11.21302 -11.10865 -10.76463 -10.58970 -9.85916 -8.24115 -6.35639 -0.78130 1.38902 1.41613 1.49602 1.63062 2.38541 2.73065 3.09138 3.11541 3.40104 3.68266 3.78008 3.87464 3.99884 4.05868 4.13049 4.23824 4.25561 4.27273 4.36715 4.46515 4.52779 4.58242 4.71663 4.80579 4.82724 4.88273 4.89802 4.94643 5.01501 5.02176 5.06546 5.11257 5.13703 5.20523 5.25264 5.30122 5.31556 5.41726 5.45342 5.49225 5.57421 5.58553 5.66541 5.76060 5.76431 6.17123 6.79088 7.33745 8.87237 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014104 B = 0.003832 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.837173 B = 7305.201455 C = 8026.863871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.084 4.084 3 C -0.148 4.148 4 C -0.191 4.191 5 C 0.160 3.840 6 H 0.093 0.907 7 C -0.134 4.134 8 C -0.114 4.114 9 C -0.137 4.137 10 C 0.110 3.890 11 N -0.993 5.993 12 S 2.617 3.383 13 O -0.992 6.992 14 O -0.973 6.973 15 C -0.615 4.615 16 C -0.103 4.103 17 C 0.034 3.966 18 C -0.554 4.554 19 H 0.060 0.940 20 C 0.005 3.995 21 N -0.929 5.929 22 Si 0.963 3.037 23 H -0.267 1.267 24 H -0.280 1.280 25 H -0.267 1.267 26 H 0.047 0.953 27 H 0.069 0.931 28 H 0.044 0.956 29 H 0.088 0.912 30 H 0.046 0.954 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.111 0.889 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.095 0.905 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.093 0.907 40 H 0.059 0.941 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.141 0.859 44 H 0.138 0.862 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.002 0.998 48 H 0.001 0.999 49 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.085 16.284 -10.144 23.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.103 4.103 3 C -0.205 4.205 4 C -0.229 4.229 5 C 0.055 3.945 6 H 0.111 0.889 7 C -0.173 4.173 8 C -0.151 4.151 9 C -0.176 4.176 10 C -0.015 4.015 11 N -0.832 5.832 12 S 2.714 3.286 13 O -0.982 6.982 14 O -0.964 6.964 15 C -0.744 4.744 16 C -0.142 4.142 17 C -0.004 4.004 18 C -0.592 4.592 19 H 0.078 0.922 20 C -0.194 4.194 21 N -0.569 5.569 22 Si 0.787 3.213 23 H -0.192 1.192 24 H -0.205 1.205 25 H -0.192 1.192 26 H 0.066 0.934 27 H 0.088 0.912 28 H 0.063 0.937 29 H 0.106 0.894 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.129 0.871 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.113 0.887 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.111 0.889 40 H 0.078 0.922 41 H 0.105 0.895 42 H 0.102 0.898 43 H 0.159 0.841 44 H 0.156 0.844 45 H 0.082 0.918 46 H 0.084 0.916 47 H 0.020 0.980 48 H 0.019 0.981 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 13.964 16.589 -9.375 23.623 hybrid contribution -1.028 -1.322 0.166 1.683 sum 12.935 15.267 -9.208 22.027 Atomic orbital electron populations 1.21894 0.95676 1.01487 1.02056 1.21045 0.95415 0.96955 0.96900 1.21897 1.01678 0.95012 1.01911 1.23127 0.94408 1.02480 1.02925 1.21163 0.93280 0.95180 0.84911 0.88869 1.22102 0.97202 1.01132 0.96879 1.21481 0.95066 1.00423 0.98147 1.21968 1.02555 0.98847 0.94180 1.21677 0.79225 1.01116 0.99432 1.57682 1.19097 1.67738 1.38651 1.04649 0.73913 0.76116 0.73892 1.93489 1.66017 1.85433 1.53284 1.93482 1.66885 1.50084 1.85901 1.30762 1.12045 1.20394 1.11246 1.21287 0.96642 0.99786 0.96490 1.18927 0.94188 0.91864 0.95432 1.21690 1.22074 1.13174 1.02284 0.92215 1.25926 0.99132 0.96792 0.97517 1.70069 1.41699 1.21630 1.23487 0.85536 0.78842 0.77922 0.79015 1.19196 1.20478 1.19214 0.93387 0.91179 0.93676 0.89418 0.93459 0.91384 0.91611 0.87126 0.92644 0.92171 0.88688 0.90722 0.90652 0.88873 0.92228 0.89504 0.89768 0.84094 0.84361 0.91846 0.91590 0.97976 0.98080 0.92592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 9.19 71.98 0.66 -2.46 16 2 C -0.08 -1.52 2.63 -10.79 -0.03 -1.55 16 3 C -0.15 -2.21 8.83 71.98 0.64 -1.58 16 4 C -0.19 -4.38 2.85 30.60 0.09 -4.29 16 5 C 0.16 3.05 2.68 44.98 0.12 3.17 16 6 H 0.09 1.55 6.88 -2.38 -0.02 1.54 16 7 C -0.13 -2.01 4.75 30.68 0.15 -1.86 16 8 C -0.11 -1.40 5.88 30.63 0.18 -1.22 16 9 C -0.14 -1.99 6.09 30.67 0.19 -1.80 16 10 C 0.11 2.07 6.38 86.36 0.55 2.62 16 11 N -0.99 -22.76 3.21 -490.76 -1.58 -24.33 16 12 S 2.62 81.24 4.84 -56.49 -0.27 80.97 16 13 O -0.99 -36.17 16.41 -127.65 -2.10 -38.26 16 14 O -0.97 -33.82 14.02 -127.65 -1.79 -35.61 16 15 C -0.61 -20.14 5.93 71.98 0.43 -19.71 16 16 C -0.10 -4.37 5.16 30.59 0.16 -4.22 16 17 C 0.03 1.80 4.97 29.85 0.15 1.95 16 18 C -0.55 -32.02 9.11 25.60 0.23 -31.79 16 19 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 20 C 0.00 0.27 5.46 84.65 0.46 0.74 16 21 N -0.93 -56.14 13.29 21.45 0.28 -55.86 16 22 Si 0.96 44.49 29.54 68.60 2.03 46.52 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 24 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 25 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 26 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.09 1.32 6.22 -2.39 -0.01 1.30 16 30 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.07 0.83 6.91 -2.38 -0.02 0.81 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.11 3.10 5.31 -6.97 -0.04 3.06 16 34 H 0.06 1.38 5.05 -2.39 -0.01 1.37 16 35 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.09 1.09 6.60 -2.39 -0.02 1.07 16 37 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 39 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 41 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.08 1.79 6.80 -2.39 -0.02 1.77 16 43 H 0.14 4.24 5.75 -2.39 -0.01 4.22 16 44 H 0.14 4.12 8.14 -2.39 -0.02 4.10 16 45 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 46 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 47 H 0.00 0.10 8.14 -2.38 -0.02 0.08 16 48 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 49 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -71.32 378.39 1.42 -69.90 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: 0.87 Total: 18.67 kcal Atomic # 6 Polarization: -65.98 SS G_CDS: 3.97 Total: -62.01 kcal Atomic # 7 Polarization: -78.90 SS G_CDS: -1.29 Total: -80.19 kcal Atomic # 8 Polarization: -69.98 SS G_CDS: -3.89 Total: -73.87 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 16 Polarization: 81.24 SS G_CDS: -0.27 Total: 80.97 kcal Total: -71.32 1.42 -69.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129269957.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.906 kcal (2) G-P(sol) polarization free energy of solvation -71.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds