Wall clock time and date at job start Tue Mar 31 2020 11:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47082 * 2 1 4 4 C 1.53003 * 109.47081 * 120.00225 * 2 1 3 5 5 C 1.52997 * 109.47002 * 64.17014 * 4 2 1 6 6 H 1.09001 * 109.70439 * 294.58429 * 5 4 2 7 7 C 1.53623 * 109.66587 * 55.17811 * 5 4 2 8 8 C 1.53049 * 109.24301 * 174.54630 * 7 5 4 9 9 C 1.53043 * 109.53528 * 298.51357 * 8 7 5 10 10 C 1.53181 * 109.31476 * 61.36458 * 9 8 7 11 11 N 1.46925 * 108.77667 * 305.36186 * 10 9 8 12 12 S 1.65601 * 120.63365 * 233.58787 * 11 10 9 13 13 O 1.42101 * 104.27447 * 344.82804 * 12 11 10 14 14 O 1.42100 * 104.27812 * 216.97316 * 12 11 10 15 15 C 1.81403 * 104.45063 * 100.89951 * 12 11 10 16 16 C 1.52996 * 109.46949 * 180.02562 * 15 12 11 17 17 C 1.53007 * 109.47069 * 180.02562 * 16 15 12 18 18 C 1.50698 * 109.47081 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00035 * 359.97438 * 18 17 16 20 20 C 1.37872 * 119.99805 * 179.72604 * 18 17 16 21 21 N 1.31514 * 120.00129 * 0.27061 * 20 18 17 22 22 Si 1.86799 * 120.00076 * 180.27288 * 20 18 17 23 23 H 1.48499 * 109.47257 * 59.99901 * 22 20 18 24 24 H 1.48508 * 109.47329 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.47159 * 299.99591 * 22 20 18 26 26 H 1.09001 * 109.47297 * 174.85059 * 1 2 3 27 27 H 1.08998 * 109.46951 * 294.85002 * 1 2 3 28 28 H 1.08997 * 109.47237 * 54.85118 * 1 2 3 29 29 H 1.09002 * 109.46890 * 240.00025 * 2 1 3 30 30 H 1.09001 * 109.47265 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47304 * 300.00236 * 3 2 1 32 32 H 1.09002 * 109.47238 * 60.00238 * 3 2 1 33 33 H 1.08993 * 109.47106 * 304.16793 * 4 2 1 34 34 H 1.09001 * 109.46702 * 184.16593 * 4 2 1 35 35 H 1.09007 * 109.63388 * 54.55911 * 7 5 4 36 36 H 1.09004 * 109.45863 * 294.43122 * 7 5 4 37 37 H 1.08994 * 109.45695 * 178.49012 * 8 7 5 38 38 H 1.08998 * 109.44528 * 58.52504 * 8 7 5 39 39 H 1.09000 * 109.49461 * 301.40762 * 9 8 7 40 40 H 1.09004 * 109.49086 * 181.31924 * 9 8 7 41 41 H 1.09002 * 109.58829 * 185.57692 * 10 9 8 42 42 H 1.08998 * 109.59307 * 65.15115 * 10 9 8 43 43 H 1.08998 * 109.47067 * 60.00323 * 15 12 11 44 44 H 1.08997 * 109.46654 * 299.99724 * 15 12 11 45 45 H 1.09002 * 109.47608 * 60.00294 * 16 15 12 46 46 H 1.09000 * 109.47634 * 300.00010 * 16 15 12 47 47 H 1.08998 * 109.47092 * 60.00043 * 17 16 15 48 48 H 1.09005 * 109.46795 * 299.99660 * 17 16 15 49 49 H 0.97003 * 120.00202 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6174 -2.1909 1.1978 6 1 0.5314 -2.2633 1.2564 7 6 2.1097 -2.8248 -0.1120 8 6 1.8022 -4.3240 -0.0937 9 6 2.5451 -4.9846 1.0699 10 6 2.0625 -4.3758 2.3901 11 7 2.2209 -2.9166 2.3238 12 16 3.0579 -2.1044 3.4995 13 8 3.1616 -3.0391 4.5649 14 8 2.3436 -0.8866 3.6604 15 6 4.6867 -1.7947 2.7636 16 6 5.5639 -1.0411 3.7654 17 6 6.9376 -0.7792 3.1444 18 6 7.8018 -0.0375 4.1314 19 1 7.4103 0.2217 5.1040 20 6 9.0939 0.3058 3.7945 21 7 9.5705 -0.0093 2.6099 22 14 10.1677 1.2185 5.0206 23 1 10.3230 0.3987 6.2490 24 1 11.5030 1.4675 4.4201 25 1 9.5311 2.5146 5.3675 26 1 -0.3634 -1.0235 -0.0922 27 1 -0.3633 0.4319 0.9325 28 1 -0.3633 0.5916 -0.8403 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6170 -0.2525 2.1376 34 1 3.1275 -0.6571 1.2873 35 1 3.1851 -2.6753 -0.2098 36 1 1.5994 -2.3591 -0.9552 37 1 2.1259 -4.7726 -1.0328 38 1 0.7294 -4.4728 0.0292 39 1 3.6163 -4.8147 0.9609 40 1 2.3442 -6.0560 1.0683 41 1 2.6573 -4.7708 3.2137 42 1 1.0121 -4.6227 2.5441 43 1 4.5694 -1.1959 1.8605 44 1 5.1579 -2.7446 2.5113 45 1 5.6813 -1.6402 4.6684 46 1 5.0929 -0.0912 4.0183 47 1 6.8199 -0.1798 2.2417 48 1 7.4089 -1.7289 2.8913 49 1 10.4797 0.2319 2.3730 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129270194.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:05 Heat of formation + Delta-G solvation = -100.699551 kcal Electronic energy + Delta-G solvation = -26627.170913 eV Core-core repulsion = 23101.328484 eV Total energy + Delta-G solvation = -3525.842429 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.38298 -37.22336 -35.94294 -35.72087 -34.66945 -32.66515 -32.20118 -31.39544 -27.87630 -27.20910 -26.83217 -24.36485 -23.62518 -22.69644 -20.88803 -20.42764 -19.69243 -18.72333 -17.28962 -16.54074 -16.49378 -15.69144 -15.29254 -14.98019 -14.80258 -14.50348 -14.44467 -14.19031 -13.97708 -13.69031 -13.62381 -13.32462 -12.61493 -12.36757 -12.29129 -12.15652 -12.09048 -11.89138 -11.83286 -11.75293 -11.58592 -11.36592 -11.26065 -11.15961 -10.93628 -10.89949 -10.87669 -10.84938 -10.63115 -10.43304 -10.39066 -9.94279 -9.91628 -9.44926 -9.21457 -8.85363 -8.40199 -6.05313 -4.08432 0.47921 2.74415 3.32215 3.36035 3.39281 3.98831 4.28168 4.32742 4.42739 4.62178 4.69534 4.77448 4.85467 4.93032 4.99051 5.02725 5.19523 5.21439 5.25240 5.27105 5.31110 5.48130 5.55278 5.58593 5.60350 5.67359 5.72854 5.79383 5.82476 5.85290 5.86251 5.92221 5.94736 6.04055 6.09899 6.16829 6.25894 6.28300 6.29859 6.47391 6.55719 6.62860 6.87697 7.56978 7.67211 7.92497 8.33178 8.97489 9.56216 11.05843 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014112 B = 0.003836 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.668577 B = 7297.643552 C = 8023.318699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.088 4.088 3 C -0.150 4.150 4 C -0.183 4.183 5 C 0.161 3.839 6 H 0.079 0.921 7 C -0.135 4.135 8 C -0.116 4.116 9 C -0.137 4.137 10 C 0.119 3.881 11 N -1.000 6.000 12 S 2.597 3.403 13 O -0.965 6.965 14 O -0.956 6.956 15 C -0.613 4.613 16 C -0.105 4.105 17 C 0.032 3.968 18 C -0.527 4.527 19 H 0.057 0.943 20 C 0.059 3.941 21 N -0.895 5.895 22 Si 0.894 3.106 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.276 1.276 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.130 0.870 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.095 0.905 42 H 0.068 0.932 43 H 0.129 0.871 44 H 0.126 0.874 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.020 0.980 48 H 0.020 0.980 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.108 -6.974 -8.566 22.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.107 4.107 3 C -0.208 4.208 4 C -0.221 4.221 5 C 0.056 3.944 6 H 0.097 0.903 7 C -0.174 4.174 8 C -0.154 4.154 9 C -0.176 4.176 10 C -0.006 4.006 11 N -0.837 5.837 12 S 2.695 3.305 13 O -0.955 6.955 14 O -0.946 6.946 15 C -0.744 4.744 16 C -0.144 4.144 17 C -0.006 4.006 18 C -0.565 4.565 19 H 0.076 0.924 20 C -0.143 4.143 21 N -0.534 5.534 22 Si 0.722 3.278 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.201 1.201 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.148 0.852 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.113 0.887 42 H 0.086 0.914 43 H 0.147 0.853 44 H 0.144 0.856 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.038 0.962 48 H 0.038 0.962 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.328 -6.762 -7.796 21.911 hybrid contribution 1.228 0.319 -0.111 1.273 sum -18.100 -6.443 -7.907 20.776 Atomic orbital electron populations 1.21911 0.95351 1.01518 1.01935 1.21043 0.95766 0.96421 0.97444 1.21855 1.01530 0.95626 1.01772 1.23083 1.02261 0.94191 1.02525 1.21071 0.97795 0.90418 0.85145 0.90346 1.22153 1.02255 0.95659 0.97348 1.21468 1.00279 0.95410 0.98224 1.21948 1.00993 0.99742 0.94959 1.21414 1.02014 0.78765 0.98424 1.57918 1.69013 1.15761 1.41034 1.05440 0.77076 0.73915 0.74029 1.93530 1.87429 1.62697 1.51875 1.93496 1.69740 1.46294 1.85072 1.30778 1.20510 1.10736 1.12426 1.21492 0.98811 0.98202 0.95904 1.19046 0.88281 0.97171 0.96126 1.21213 0.97631 1.36785 1.00861 0.92449 1.25007 0.97971 0.95944 0.95364 1.69948 1.16442 1.46997 1.20049 0.86626 0.79492 0.80366 0.81364 1.20119 1.21236 1.20101 0.92728 0.92340 0.92872 0.90958 0.92290 0.92836 0.92269 0.85192 0.91401 0.91135 0.90621 0.91881 0.92003 0.91267 0.90900 0.88669 0.91402 0.85267 0.85568 0.91729 0.91626 0.96165 0.96196 0.92858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 8.80 37.16 0.33 -0.95 16 2 C -0.09 -0.85 2.59 -90.62 -0.23 -1.09 16 3 C -0.15 -1.56 9.19 37.15 0.34 -1.22 16 4 C -0.18 -2.14 2.86 -26.73 -0.08 -2.22 16 5 C 0.16 1.69 2.65 -67.37 -0.18 1.51 16 6 H 0.08 0.76 6.95 -51.93 -0.36 0.40 16 7 C -0.14 -1.19 4.72 -26.38 -0.12 -1.31 16 8 C -0.12 -0.91 5.88 -26.68 -0.16 -1.07 16 9 C -0.14 -1.17 6.08 -26.62 -0.16 -1.33 16 10 C 0.12 1.23 6.38 -3.72 -0.02 1.21 16 11 N -1.00 -12.05 3.21 -106.24 -0.34 -12.39 16 12 S 2.60 40.18 4.83 -107.50 -0.52 39.66 16 13 O -0.96 -17.50 16.40 -57.54 -0.94 -18.45 16 14 O -0.96 -16.40 14.07 -57.54 -0.81 -17.21 16 15 C -0.61 -9.85 5.91 37.16 0.22 -9.63 16 16 C -0.10 -2.16 5.16 -26.73 -0.14 -2.30 16 17 C 0.03 0.82 4.97 -27.88 -0.14 0.68 16 18 C -0.53 -14.89 9.11 -34.44 -0.31 -15.21 16 19 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 21 N -0.90 -26.61 13.29 55.43 0.74 -25.87 16 22 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H 0.05 0.41 6.93 -51.93 -0.36 0.05 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.63 6.25 -51.93 -0.32 0.31 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.13 1.79 5.45 -51.96 -0.28 1.51 16 34 H 0.07 0.84 4.91 -51.93 -0.26 0.58 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.57 6.62 -51.93 -0.34 0.23 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.10 1.05 6.79 -51.93 -0.35 0.70 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.13 1.89 5.73 -51.92 -0.30 1.59 16 44 H 0.13 1.85 8.14 -51.93 -0.42 1.43 16 45 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 46 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 47 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 49 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 378.38 15.07 5.70 5.70 Total: -1.00 -32.85 378.38 -10.83 -43.69 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -8.88 Total: -0.39 kcal Atomic # 6 Polarization: -30.59 SS G_CDS: -0.76 Total: -31.34 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: 0.40 Total: -38.26 kcal Atomic # 8 Polarization: -33.91 SS G_CDS: -1.75 Total: -35.66 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 40.18 SS G_CDS: -0.52 Total: 39.66 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.85 -10.83 -43.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129270194.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.013 kcal (2) G-P(sol) polarization free energy of solvation -32.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds