Wall clock time and date at job start Tue Mar 31 2020 11:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47082 * 2 1 4 4 C 1.53003 * 109.47081 * 120.00225 * 2 1 3 5 5 C 1.52997 * 109.47002 * 64.17014 * 4 2 1 6 6 H 1.09001 * 109.70439 * 294.58429 * 5 4 2 7 7 C 1.53623 * 109.66587 * 55.17811 * 5 4 2 8 8 C 1.53049 * 109.24301 * 174.54630 * 7 5 4 9 9 C 1.53043 * 109.53528 * 298.51357 * 8 7 5 10 10 C 1.53181 * 109.31476 * 61.36458 * 9 8 7 11 11 N 1.46925 * 108.77667 * 305.36186 * 10 9 8 12 12 S 1.65601 * 120.63365 * 233.58787 * 11 10 9 13 13 O 1.42101 * 104.27447 * 344.82804 * 12 11 10 14 14 O 1.42100 * 104.27812 * 216.97316 * 12 11 10 15 15 C 1.81403 * 104.45063 * 100.89951 * 12 11 10 16 16 C 1.52996 * 109.46949 * 180.02562 * 15 12 11 17 17 C 1.53007 * 109.47069 * 180.02562 * 16 15 12 18 18 C 1.50698 * 109.47081 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00035 * 359.97438 * 18 17 16 20 20 C 1.37872 * 119.99805 * 179.72604 * 18 17 16 21 21 N 1.31514 * 120.00129 * 0.27061 * 20 18 17 22 22 Si 1.86799 * 120.00076 * 180.27288 * 20 18 17 23 23 H 1.48499 * 109.47257 * 59.99901 * 22 20 18 24 24 H 1.48508 * 109.47329 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.47159 * 299.99591 * 22 20 18 26 26 H 1.09001 * 109.47297 * 174.85059 * 1 2 3 27 27 H 1.08998 * 109.46951 * 294.85002 * 1 2 3 28 28 H 1.08997 * 109.47237 * 54.85118 * 1 2 3 29 29 H 1.09002 * 109.46890 * 240.00025 * 2 1 3 30 30 H 1.09001 * 109.47265 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47304 * 300.00236 * 3 2 1 32 32 H 1.09002 * 109.47238 * 60.00238 * 3 2 1 33 33 H 1.08993 * 109.47106 * 304.16793 * 4 2 1 34 34 H 1.09001 * 109.46702 * 184.16593 * 4 2 1 35 35 H 1.09007 * 109.63388 * 54.55911 * 7 5 4 36 36 H 1.09004 * 109.45863 * 294.43122 * 7 5 4 37 37 H 1.08994 * 109.45695 * 178.49012 * 8 7 5 38 38 H 1.08998 * 109.44528 * 58.52504 * 8 7 5 39 39 H 1.09000 * 109.49461 * 301.40762 * 9 8 7 40 40 H 1.09004 * 109.49086 * 181.31924 * 9 8 7 41 41 H 1.09002 * 109.58829 * 185.57692 * 10 9 8 42 42 H 1.08998 * 109.59307 * 65.15115 * 10 9 8 43 43 H 1.08998 * 109.47067 * 60.00323 * 15 12 11 44 44 H 1.08997 * 109.46654 * 299.99724 * 15 12 11 45 45 H 1.09002 * 109.47608 * 60.00294 * 16 15 12 46 46 H 1.09000 * 109.47634 * 300.00010 * 16 15 12 47 47 H 1.08998 * 109.47092 * 60.00043 * 17 16 15 48 48 H 1.09005 * 109.46795 * 299.99660 * 17 16 15 49 49 H 0.97003 * 120.00202 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6174 -2.1909 1.1978 6 1 0.5314 -2.2633 1.2564 7 6 2.1097 -2.8248 -0.1120 8 6 1.8022 -4.3240 -0.0937 9 6 2.5451 -4.9846 1.0699 10 6 2.0625 -4.3758 2.3901 11 7 2.2209 -2.9166 2.3238 12 16 3.0579 -2.1044 3.4995 13 8 3.1616 -3.0391 4.5649 14 8 2.3436 -0.8866 3.6604 15 6 4.6867 -1.7947 2.7636 16 6 5.5639 -1.0411 3.7654 17 6 6.9376 -0.7792 3.1444 18 6 7.8018 -0.0375 4.1314 19 1 7.4103 0.2217 5.1040 20 6 9.0939 0.3058 3.7945 21 7 9.5705 -0.0093 2.6099 22 14 10.1677 1.2185 5.0206 23 1 10.3230 0.3987 6.2490 24 1 11.5030 1.4675 4.4201 25 1 9.5311 2.5146 5.3675 26 1 -0.3634 -1.0235 -0.0922 27 1 -0.3633 0.4319 0.9325 28 1 -0.3633 0.5916 -0.8403 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6170 -0.2525 2.1376 34 1 3.1275 -0.6571 1.2873 35 1 3.1851 -2.6753 -0.2098 36 1 1.5994 -2.3591 -0.9552 37 1 2.1259 -4.7726 -1.0328 38 1 0.7294 -4.4728 0.0292 39 1 3.6163 -4.8147 0.9609 40 1 2.3442 -6.0560 1.0683 41 1 2.6573 -4.7708 3.2137 42 1 1.0121 -4.6227 2.5441 43 1 4.5694 -1.1959 1.8605 44 1 5.1579 -2.7446 2.5113 45 1 5.6813 -1.6402 4.6684 46 1 5.0929 -0.0912 4.0183 47 1 6.8199 -0.1798 2.2417 48 1 7.4089 -1.7289 2.8913 49 1 10.4797 0.2319 2.3730 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129270194.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:04 Heat of formation + Delta-G solvation = -120.361720 kcal Electronic energy + Delta-G solvation = -26628.023529 eV Core-core repulsion = 23101.328484 eV Total energy + Delta-G solvation = -3526.695045 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.21690 -38.46178 -37.09819 -36.79145 -36.48890 -34.20643 -33.46929 -32.19151 -29.73148 -27.96191 -27.67994 -25.78439 -24.92279 -23.57230 -22.41611 -21.38003 -20.62161 -19.86553 -18.71364 -18.21962 -17.61504 -17.14811 -16.51154 -16.18068 -16.14580 -15.67807 -15.46337 -15.20580 -14.85492 -14.56066 -14.47476 -14.38183 -14.17959 -14.10281 -13.57592 -13.25809 -13.17460 -13.07883 -13.03911 -12.90813 -12.78910 -12.70695 -12.66964 -12.41980 -12.20070 -12.16671 -11.88463 -11.82650 -11.65939 -11.56016 -11.46607 -11.37780 -11.21105 -11.11194 -10.78758 -10.58998 -9.85670 -8.24087 -6.35648 -0.78096 1.38870 1.41596 1.49550 1.63401 2.38515 2.73258 3.09149 3.11835 3.40042 3.68043 3.77834 3.86796 3.99752 4.05861 4.13002 4.23973 4.25381 4.27139 4.36816 4.45892 4.52762 4.58199 4.71428 4.80615 4.83042 4.88234 4.89627 4.94284 5.01450 5.02106 5.06577 5.11166 5.13822 5.20244 5.25320 5.30131 5.31434 5.41704 5.45010 5.49225 5.57479 5.58562 5.65686 5.75917 5.76403 6.17132 6.79082 7.33745 8.87242 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014112 B = 0.003836 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.668577 B = 7297.643552 C = 8023.318699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 C -0.154 4.154 4 C -0.187 4.187 5 C 0.159 3.841 6 H 0.094 0.906 7 C -0.134 4.134 8 C -0.114 4.114 9 C -0.136 4.136 10 C 0.110 3.890 11 N -0.993 5.993 12 S 2.617 3.383 13 O -0.992 6.992 14 O -0.974 6.974 15 C -0.615 4.615 16 C -0.103 4.103 17 C 0.034 3.966 18 C -0.554 4.554 19 H 0.060 0.940 20 C 0.005 3.995 21 N -0.929 5.929 22 Si 0.963 3.037 23 H -0.267 1.267 24 H -0.280 1.280 25 H -0.267 1.267 26 H 0.068 0.932 27 H 0.047 0.953 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.044 0.956 31 H 0.069 0.931 32 H 0.047 0.953 33 H 0.108 0.892 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.094 0.906 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.059 0.941 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.141 0.859 44 H 0.138 0.862 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.002 0.998 48 H 0.001 0.999 49 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.451 -7.657 -9.491 23.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 C -0.211 4.211 4 C -0.226 4.226 5 C 0.055 3.945 6 H 0.112 0.888 7 C -0.173 4.173 8 C -0.151 4.151 9 C -0.175 4.175 10 C -0.014 4.014 11 N -0.832 5.832 12 S 2.714 3.286 13 O -0.982 6.982 14 O -0.964 6.964 15 C -0.745 4.745 16 C -0.142 4.142 17 C -0.004 4.004 18 C -0.592 4.592 19 H 0.078 0.922 20 C -0.194 4.194 21 N -0.569 5.569 22 Si 0.787 3.213 23 H -0.192 1.192 24 H -0.205 1.205 25 H -0.192 1.192 26 H 0.087 0.913 27 H 0.066 0.934 28 H 0.084 0.916 29 H 0.106 0.894 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.126 0.874 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.113 0.887 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.111 0.889 41 H 0.102 0.898 42 H 0.105 0.895 43 H 0.159 0.841 44 H 0.157 0.843 45 H 0.082 0.918 46 H 0.084 0.916 47 H 0.020 0.980 48 H 0.019 0.981 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -20.666 -7.442 -8.713 23.630 hybrid contribution 1.597 0.512 0.129 1.682 sum -19.069 -6.930 -8.584 22.030 Atomic orbital electron populations 1.21897 0.94070 1.02591 1.01935 1.21051 0.96793 0.95621 0.96893 1.21893 1.00644 0.96513 1.02074 1.23059 1.01364 0.95425 1.02717 1.21263 0.98484 0.89454 0.85334 0.88804 1.22172 1.01833 0.96627 0.96665 1.21479 1.00970 0.94335 0.98334 1.21968 1.00499 1.00926 0.94152 1.21673 1.03115 0.77328 0.99323 1.57689 1.67958 1.16690 1.40890 1.04644 0.76526 0.73363 0.74041 1.93489 1.87709 1.63411 1.53633 1.93497 1.69764 1.47468 1.85689 1.30769 1.20937 1.10949 1.11798 1.21290 0.97148 0.99022 0.96751 1.18928 0.90663 0.95507 0.95302 1.21688 0.98641 1.37346 1.01550 0.92218 1.25923 0.99421 0.96712 0.97299 1.70066 1.16981 1.47977 1.21859 0.85540 0.77608 0.79221 0.78962 1.19231 1.20476 1.19182 0.91336 0.93414 0.91619 0.89432 0.93725 0.91181 0.93339 0.87426 0.92693 0.92129 0.88739 0.90649 0.90703 0.92232 0.88891 0.89769 0.89515 0.84066 0.84349 0.91848 0.91602 0.97963 0.98084 0.92588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 8.80 71.98 0.63 -1.55 16 2 C -0.08 -1.53 2.59 -10.79 -0.03 -1.56 16 3 C -0.15 -3.13 9.19 71.98 0.66 -2.47 16 4 C -0.19 -4.30 2.86 30.59 0.09 -4.21 16 5 C 0.16 3.05 2.65 45.12 0.12 3.17 16 6 H 0.09 1.56 6.95 -2.39 -0.02 1.54 16 7 C -0.13 -2.00 4.72 30.82 0.15 -1.85 16 8 C -0.11 -1.40 5.88 30.62 0.18 -1.22 16 9 C -0.14 -1.99 6.08 30.67 0.19 -1.80 16 10 C 0.11 2.07 6.38 86.36 0.55 2.62 16 11 N -0.99 -22.77 3.21 -490.04 -1.57 -24.34 16 12 S 2.62 81.35 4.83 -56.49 -0.27 81.08 16 13 O -0.99 -36.21 16.40 -127.65 -2.09 -38.30 16 14 O -0.97 -33.92 14.07 -127.65 -1.80 -35.72 16 15 C -0.61 -20.16 5.91 71.98 0.43 -19.73 16 16 C -0.10 -4.38 5.16 30.60 0.16 -4.22 16 17 C 0.03 1.81 4.97 29.85 0.15 1.96 16 18 C -0.55 -32.03 9.11 25.60 0.23 -31.80 16 19 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 20 C 0.00 0.28 5.46 84.65 0.46 0.74 16 21 N -0.93 -56.14 13.29 21.45 0.28 -55.85 16 22 Si 0.96 44.49 29.54 68.60 2.03 46.52 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 24 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 25 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 26 H 0.07 0.82 6.93 -2.39 -0.02 0.80 16 27 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.09 1.32 6.25 -2.39 -0.01 1.31 16 30 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 32 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.11 3.00 5.45 -2.83 -0.02 2.99 16 34 H 0.05 1.38 4.91 -2.39 -0.01 1.36 16 35 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 36 H 0.09 1.08 6.62 -2.38 -0.02 1.06 16 37 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.07 0.76 8.14 -2.39 -0.02 0.75 16 39 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.08 1.79 6.79 -2.39 -0.02 1.77 16 42 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.14 4.25 5.73 -2.39 -0.01 4.23 16 44 H 0.14 4.13 8.14 -2.39 -0.02 4.11 16 45 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 46 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 47 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 48 H 0.00 0.04 8.14 -2.38 -0.02 0.02 16 49 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -71.37 378.38 1.44 -69.94 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 0.90 Total: 18.59 kcal Atomic # 6 Polarization: -65.88 SS G_CDS: 3.96 Total: -61.91 kcal Atomic # 7 Polarization: -78.91 SS G_CDS: -1.29 Total: -80.19 kcal Atomic # 8 Polarization: -70.13 SS G_CDS: -3.89 Total: -74.02 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 16 Polarization: 81.35 SS G_CDS: -0.27 Total: 81.08 kcal Total: -71.37 1.44 -69.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129270194.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.426 kcal (2) G-P(sol) polarization free energy of solvation -71.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds