Wall clock time and date at job start Tue Mar 31 2020 12:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53009 * 109.47199 * 2 1 4 4 C 1.52994 * 109.47199 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47194 * 55.00049 * 4 3 2 6 6 C 1.52999 * 109.47476 * 294.99939 * 4 3 2 7 7 C 1.52999 * 109.47122 * 174.99969 * 4 3 2 8 8 H 1.08999 * 109.99668 * 301.29104 * 7 4 3 9 9 C 1.54318 * 109.77401 * 62.44323 * 7 4 3 10 10 C 1.55160 * 102.86165 * 141.88613 * 9 7 4 11 11 C 1.54904 * 101.58295 * 324.30382 * 10 9 7 12 12 N 1.47018 * 109.88674 * 180.19444 * 7 4 3 13 13 S 1.65599 * 125.64966 * 61.67209 * 12 7 4 14 14 O 1.42101 * 104.27771 * 153.65116 * 13 12 7 15 15 O 1.42106 * 104.27506 * 25.79583 * 13 12 7 16 16 C 1.81397 * 104.45159 * 269.72291 * 13 12 7 17 17 C 1.53010 * 109.46960 * 179.97438 * 16 13 12 18 18 C 1.52995 * 109.47031 * 179.97438 * 17 16 13 19 19 C 1.50693 * 109.47188 * 180.02562 * 18 17 16 20 20 H 1.08000 * 120.00162 * 0.02562 * 19 18 17 21 21 C 1.37884 * 120.00314 * 180.02562 * 19 18 17 22 22 N 1.31515 * 119.99444 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00101 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46971 * 180.02562 * 23 21 19 25 25 H 1.48507 * 109.47166 * 299.99878 * 23 21 19 26 26 H 1.48496 * 109.47466 * 59.99939 * 23 21 19 27 27 H 1.09003 * 109.47488 * 59.99817 * 1 2 3 28 28 H 1.08998 * 109.47027 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47381 * 300.00118 * 1 2 3 30 30 H 1.08993 * 109.47240 * 240.00217 * 2 1 3 31 31 H 1.08999 * 109.47275 * 119.99716 * 2 1 3 32 32 H 1.09000 * 109.47051 * 59.99680 * 3 2 1 33 33 H 1.09003 * 109.47051 * 300.00451 * 3 2 1 34 34 H 1.09008 * 109.46889 * 67.16557 * 6 4 3 35 35 H 1.08989 * 109.47551 * 187.17149 * 6 4 3 36 36 H 1.09002 * 109.46785 * 307.17102 * 6 4 3 37 37 H 1.09001 * 110.92608 * 23.47150 * 9 7 4 38 38 H 1.09002 * 110.58969 * 260.14855 * 9 7 4 39 39 H 1.09001 * 111.00141 * 206.22527 * 10 9 7 40 40 H 1.08998 * 111.03535 * 82.39401 * 10 9 7 41 41 H 1.09003 * 110.36688 * 278.17618 * 11 10 9 42 42 H 1.08998 * 110.46130 * 155.89257 * 11 10 9 43 43 H 1.09003 * 109.47290 * 60.00143 * 16 13 12 44 44 H 1.08994 * 109.47265 * 300.00001 * 16 13 12 45 45 H 1.09003 * 109.46576 * 60.00228 * 17 16 13 46 46 H 1.08994 * 109.47558 * 300.00343 * 17 16 13 47 47 H 1.09003 * 109.47150 * 60.00707 * 18 17 16 48 48 H 1.09002 * 109.47178 * 300.00343 * 18 17 16 49 49 H 0.96994 * 120.00422 * 0.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9329 0.8533 -0.8427 6 6 4.0806 0.8328 1.3064 7 6 4.0799 2.8796 -0.1264 8 1 3.7022 3.3302 -1.0442 9 6 3.6210 3.7051 1.0941 10 6 4.8477 4.6115 1.3789 11 6 6.0223 3.6640 1.0297 12 7 5.5500 2.8898 -0.1326 13 16 6.5155 2.1586 -1.2620 14 8 7.7174 2.9164 -1.2389 15 8 5.7076 2.1018 -2.4296 16 6 6.8006 0.4927 -0.6034 17 6 7.6904 -0.2923 -1.5696 18 6 7.9314 -1.6972 -1.0138 19 6 8.8082 -2.4701 -1.9650 20 1 9.1589 -2.0055 -2.8747 21 6 9.1628 -3.7704 -1.6739 22 7 8.7362 -4.3358 -0.5659 23 14 10.2502 -4.7281 -2.8527 24 1 10.4831 -6.0922 -2.3139 25 1 9.5811 -4.8261 -4.1748 26 1 11.5505 -4.0276 -3.0068 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.8257 -0.2266 1.3370 35 1 5.1629 0.9479 1.3626 36 1 3.6166 1.3426 2.1507 37 1 3.4137 3.0578 1.9462 38 1 2.7470 4.3063 0.8435 39 1 4.8811 4.9053 2.4280 40 1 4.8460 5.4873 0.7300 41 1 6.2353 2.9994 1.8670 42 1 6.9104 4.2388 0.7670 43 1 5.8462 -0.0215 -0.4899 44 1 7.2921 0.5647 0.3667 45 1 8.6448 0.2217 -1.6834 46 1 7.1985 -0.3643 -2.5395 47 1 6.9771 -2.2114 -0.8996 48 1 8.4235 -1.6248 -0.0439 49 1 8.1718 -3.8384 0.0464 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134585712.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:54 Heat of formation + Delta-G solvation = -112.165995 kcal Electronic energy + Delta-G solvation = -26306.928820 eV Core-core repulsion = 22780.589169 eV Total energy + Delta-G solvation = -3526.339651 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.70036 -36.99989 -36.05925 -35.78244 -34.92188 -32.45540 -32.14680 -31.16358 -28.31218 -27.46281 -26.72604 -23.70834 -23.37177 -22.05847 -21.68181 -20.84678 -19.70185 -18.52362 -17.60040 -16.89162 -16.59751 -16.01947 -15.67141 -15.49462 -14.63109 -14.42955 -14.20765 -14.07228 -13.80089 -13.70697 -13.27300 -13.15603 -13.06872 -12.45417 -12.23292 -12.06698 -12.01077 -11.95490 -11.93796 -11.85094 -11.76296 -11.65579 -11.42268 -11.39971 -11.22790 -10.91488 -10.80824 -10.80409 -10.70300 -10.60260 -10.47936 -10.13743 -10.09081 -9.78257 -9.01428 -8.56835 -8.36784 -6.40666 -4.10365 0.37373 2.71793 3.43710 3.45447 3.64021 3.95440 4.08711 4.21567 4.45258 4.52218 4.55978 4.70002 4.78409 4.81260 5.00171 5.04866 5.07818 5.10891 5.18795 5.26232 5.30863 5.37209 5.38589 5.48583 5.55703 5.58946 5.61382 5.68610 5.70023 5.74742 5.79023 5.82617 5.93403 5.93920 5.98690 6.01609 6.07919 6.14337 6.21559 6.28539 6.34475 6.37872 6.71841 7.26764 7.38999 8.13714 8.41427 8.83128 9.61784 11.00011 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012877 B = 0.003811 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.907547 B = 7345.663761 C = 8731.399503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.130 4.130 3 C -0.107 4.107 4 C -0.120 4.120 5 H 0.075 0.925 6 C -0.155 4.155 7 C 0.157 3.843 8 H 0.080 0.920 9 C -0.127 4.127 10 C -0.128 4.128 11 C 0.115 3.885 12 N -1.011 6.011 13 S 2.613 3.387 14 O -0.959 6.959 15 O -0.956 6.956 16 C -0.615 4.615 17 C -0.097 4.097 18 C 0.019 3.981 19 C -0.607 4.607 20 H 0.051 0.949 21 C 0.016 3.984 22 N -0.912 5.912 23 Si 1.069 2.931 24 H -0.282 1.282 25 H -0.287 1.287 26 H -0.287 1.287 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.082 0.918 43 H 0.129 0.871 44 H 0.126 0.874 45 H 0.066 0.934 46 H 0.066 0.934 47 H 0.011 0.989 48 H 0.011 0.989 49 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.129 16.542 6.941 23.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.167 4.167 3 C -0.145 4.145 4 C -0.140 4.140 5 H 0.094 0.906 6 C -0.212 4.212 7 C 0.051 3.949 8 H 0.098 0.902 9 C -0.166 4.166 10 C -0.167 4.167 11 C -0.011 4.011 12 N -0.847 5.847 13 S 2.711 3.289 14 O -0.950 6.950 15 O -0.946 6.946 16 C -0.747 4.747 17 C -0.137 4.137 18 C -0.019 4.019 19 C -0.646 4.646 20 H 0.070 0.930 21 C -0.188 4.188 22 N -0.548 5.548 23 Si 0.897 3.103 24 H -0.207 1.207 25 H -0.213 1.213 26 H -0.213 1.213 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.101 0.899 43 H 0.147 0.853 44 H 0.144 0.856 45 H 0.085 0.915 46 H 0.085 0.915 47 H 0.029 0.971 48 H 0.029 0.971 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.024 15.477 5.840 21.687 hybrid contribution -0.832 0.941 0.758 1.467 sum -14.855 16.418 6.598 23.103 Atomic orbital electron populations 1.21762 0.96002 1.01562 1.01537 1.21600 0.95666 0.96843 1.02605 1.21562 0.93513 0.97206 1.02213 1.21744 0.96704 0.96150 0.99388 0.90629 1.22033 1.01561 1.00958 0.96641 1.21352 0.78875 0.95266 0.99363 0.90162 1.22795 0.98001 0.97921 0.97844 1.22738 0.94224 0.97861 1.01882 1.22031 0.97959 0.93499 0.87579 1.58804 1.15954 1.67310 1.42652 1.04977 0.73185 0.77098 0.73640 1.93556 1.46722 1.68434 1.86269 1.93560 1.68651 1.87422 1.45005 1.30772 1.10443 1.21469 1.11983 1.21351 0.96873 0.99167 0.96280 1.19163 0.96689 0.89533 0.96519 1.22073 1.34044 1.00430 1.08009 0.93035 1.25878 0.98206 0.95655 0.99015 1.70795 1.33321 1.40081 1.10559 0.83542 0.75778 0.76119 0.74870 1.20715 1.21329 1.21323 0.92834 0.92833 0.92957 0.91743 0.91640 0.91592 0.91705 0.92043 0.92224 0.92049 0.89814 0.90433 0.90144 0.90724 0.91633 0.89923 0.85311 0.85551 0.91536 0.91511 0.97055 0.97073 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 37.15 0.37 -0.81 16 2 C -0.13 -1.16 5.69 -26.73 -0.15 -1.31 16 3 C -0.11 -0.90 4.38 -26.73 -0.12 -1.02 16 4 C -0.12 -1.22 1.96 -90.62 -0.18 -1.40 16 5 H 0.08 0.92 6.91 -51.93 -0.36 0.56 16 6 C -0.15 -1.48 7.51 37.16 0.28 -1.20 16 7 C 0.16 1.60 2.55 -66.96 -0.17 1.43 16 8 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 9 C -0.13 -0.91 5.30 -24.90 -0.13 -1.04 16 10 C -0.13 -0.92 7.08 -24.58 -0.17 -1.10 16 11 C 0.11 1.10 6.98 -2.53 -0.02 1.09 16 12 N -1.01 -12.10 2.48 -104.43 -0.26 -12.36 16 13 S 2.61 41.56 5.20 -107.50 -0.56 41.00 16 14 O -0.96 -17.80 17.28 -57.54 -0.99 -18.80 16 15 O -0.96 -17.59 17.46 -57.54 -1.00 -18.60 16 16 C -0.62 -9.97 5.07 37.16 0.19 -9.78 16 17 C -0.10 -2.04 5.16 -26.73 -0.14 -2.18 16 18 C 0.02 0.49 4.28 -27.89 -0.12 0.37 16 19 C -0.61 -17.52 9.11 -34.44 -0.31 -17.83 16 20 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 21 C 0.02 0.47 5.46 -17.82 -0.10 0.38 16 22 N -0.91 -27.89 13.65 55.43 0.76 -27.13 16 23 Si 1.07 25.48 29.90 -169.99 -5.08 20.39 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.58 6.73 -51.93 -0.35 0.24 16 32 H 0.07 0.46 7.38 -51.93 -0.38 0.08 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.61 6.93 -51.92 -0.36 0.25 16 35 H 0.06 0.60 5.81 -51.94 -0.30 0.30 16 36 H 0.06 0.48 6.26 -51.93 -0.33 0.15 16 37 H 0.08 0.54 5.58 -51.93 -0.29 0.25 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.54 8.03 -51.93 -0.42 0.13 16 42 H 0.08 0.85 7.66 -51.93 -0.40 0.45 16 43 H 0.13 1.91 5.95 -51.92 -0.31 1.60 16 44 H 0.13 1.83 8.14 -51.93 -0.42 1.40 16 45 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 46 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 47 H 0.01 0.29 8.01 -51.93 -0.42 -0.12 16 48 H 0.01 0.29 8.01 -51.93 -0.42 -0.13 16 49 H 0.27 8.10 7.22 -40.82 -0.29 7.81 16 LS Contribution 383.68 15.07 5.78 5.78 Total: -1.00 -34.79 383.68 -11.03 -45.82 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -8.89 Total: -1.70 kcal Atomic # 6 Polarization: -33.64 SS G_CDS: -0.77 Total: -34.41 kcal Atomic # 7 Polarization: -39.99 SS G_CDS: 0.50 Total: -39.49 kcal Atomic # 8 Polarization: -35.39 SS G_CDS: -2.00 Total: -37.39 kcal Atomic # 14 Polarization: 25.48 SS G_CDS: -5.08 Total: 20.39 kcal Atomic # 16 Polarization: 41.56 SS G_CDS: -0.56 Total: 41.00 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.79 -11.03 -45.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134585712.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.350 kcal (2) G-P(sol) polarization free energy of solvation -34.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds