Wall clock time and date at job start Tue Mar 31 2020 12:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53009 * 109.47199 * 2 1 4 4 C 1.52994 * 109.47199 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47194 * 55.00049 * 4 3 2 6 6 C 1.52999 * 109.47476 * 294.99939 * 4 3 2 7 7 C 1.52999 * 109.47122 * 174.99969 * 4 3 2 8 8 H 1.08999 * 109.99668 * 301.29104 * 7 4 3 9 9 C 1.54318 * 109.77401 * 62.44323 * 7 4 3 10 10 C 1.55160 * 102.86165 * 141.88613 * 9 7 4 11 11 C 1.54904 * 101.58295 * 324.30382 * 10 9 7 12 12 N 1.47018 * 109.88674 * 180.19444 * 7 4 3 13 13 S 1.65599 * 125.64966 * 61.67209 * 12 7 4 14 14 O 1.42101 * 104.27771 * 153.65116 * 13 12 7 15 15 O 1.42106 * 104.27506 * 25.79583 * 13 12 7 16 16 C 1.81397 * 104.45159 * 269.72291 * 13 12 7 17 17 C 1.53010 * 109.46960 * 179.97438 * 16 13 12 18 18 C 1.52995 * 109.47031 * 179.97438 * 17 16 13 19 19 C 1.50693 * 109.47188 * 180.02562 * 18 17 16 20 20 H 1.08000 * 120.00162 * 0.02562 * 19 18 17 21 21 C 1.37884 * 120.00314 * 180.02562 * 19 18 17 22 22 N 1.31515 * 119.99444 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00101 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46971 * 180.02562 * 23 21 19 25 25 H 1.48507 * 109.47166 * 299.99878 * 23 21 19 26 26 H 1.48496 * 109.47466 * 59.99939 * 23 21 19 27 27 H 1.09003 * 109.47488 * 59.99817 * 1 2 3 28 28 H 1.08998 * 109.47027 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47381 * 300.00118 * 1 2 3 30 30 H 1.08993 * 109.47240 * 240.00217 * 2 1 3 31 31 H 1.08999 * 109.47275 * 119.99716 * 2 1 3 32 32 H 1.09000 * 109.47051 * 59.99680 * 3 2 1 33 33 H 1.09003 * 109.47051 * 300.00451 * 3 2 1 34 34 H 1.09008 * 109.46889 * 67.16557 * 6 4 3 35 35 H 1.08989 * 109.47551 * 187.17149 * 6 4 3 36 36 H 1.09002 * 109.46785 * 307.17102 * 6 4 3 37 37 H 1.09001 * 110.92608 * 23.47150 * 9 7 4 38 38 H 1.09002 * 110.58969 * 260.14855 * 9 7 4 39 39 H 1.09001 * 111.00141 * 206.22527 * 10 9 7 40 40 H 1.08998 * 111.03535 * 82.39401 * 10 9 7 41 41 H 1.09003 * 110.36688 * 278.17618 * 11 10 9 42 42 H 1.08998 * 110.46130 * 155.89257 * 11 10 9 43 43 H 1.09003 * 109.47290 * 60.00143 * 16 13 12 44 44 H 1.08994 * 109.47265 * 300.00001 * 16 13 12 45 45 H 1.09003 * 109.46576 * 60.00228 * 17 16 13 46 46 H 1.08994 * 109.47558 * 300.00343 * 17 16 13 47 47 H 1.09003 * 109.47150 * 60.00707 * 18 17 16 48 48 H 1.09002 * 109.47178 * 300.00343 * 18 17 16 49 49 H 0.96994 * 120.00422 * 0.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9329 0.8533 -0.8427 6 6 4.0806 0.8328 1.3064 7 6 4.0799 2.8796 -0.1264 8 1 3.7022 3.3302 -1.0442 9 6 3.6210 3.7051 1.0941 10 6 4.8477 4.6115 1.3789 11 6 6.0223 3.6640 1.0297 12 7 5.5500 2.8898 -0.1326 13 16 6.5155 2.1586 -1.2620 14 8 7.7174 2.9164 -1.2389 15 8 5.7076 2.1018 -2.4296 16 6 6.8006 0.4927 -0.6034 17 6 7.6904 -0.2923 -1.5696 18 6 7.9314 -1.6972 -1.0138 19 6 8.8082 -2.4701 -1.9650 20 1 9.1589 -2.0055 -2.8747 21 6 9.1628 -3.7704 -1.6739 22 7 8.7362 -4.3358 -0.5659 23 14 10.2502 -4.7281 -2.8527 24 1 10.4831 -6.0922 -2.3139 25 1 9.5811 -4.8261 -4.1748 26 1 11.5505 -4.0276 -3.0068 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.8257 -0.2266 1.3370 35 1 5.1629 0.9479 1.3626 36 1 3.6166 1.3426 2.1507 37 1 3.4137 3.0578 1.9462 38 1 2.7470 4.3063 0.8435 39 1 4.8811 4.9053 2.4280 40 1 4.8460 5.4873 0.7300 41 1 6.2353 2.9994 1.8670 42 1 6.9104 4.2388 0.7670 43 1 5.8462 -0.0215 -0.4899 44 1 7.2921 0.5647 0.3667 45 1 8.6448 0.2217 -1.6834 46 1 7.1985 -0.3643 -2.5395 47 1 6.9771 -2.2114 -0.8996 48 1 8.4235 -1.6248 -0.0439 49 1 8.1718 -3.8384 0.0464 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134585712.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:53 Heat of formation + Delta-G solvation = -133.704153 kcal Electronic energy + Delta-G solvation = -26307.862785 eV Core-core repulsion = 22780.589169 eV Total energy + Delta-G solvation = -3527.273616 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.47265 -38.37196 -37.20008 -36.94153 -36.69058 -34.31038 -33.01181 -31.95474 -29.46551 -28.90638 -27.44608 -25.51018 -24.37520 -23.03586 -22.55757 -22.26966 -20.56611 -19.70102 -19.11087 -18.49168 -17.61723 -17.31375 -16.81293 -16.33441 -15.99527 -15.68841 -15.45565 -15.31261 -14.96968 -14.86623 -14.51584 -13.99020 -13.91000 -13.80587 -13.68946 -13.39324 -13.30479 -13.22854 -13.08712 -12.84738 -12.72367 -12.67021 -12.62878 -12.56375 -12.33552 -12.06687 -11.96769 -11.95178 -11.91203 -11.66296 -11.53793 -11.39228 -11.29783 -11.17278 -10.73980 -10.58882 -9.92221 -8.74125 -6.45259 -0.91989 1.50766 1.57836 1.58784 1.78642 2.52785 2.65656 2.94398 3.10824 3.43557 3.60135 3.63984 3.74024 3.85255 4.00190 4.10742 4.15635 4.20308 4.32185 4.39022 4.41135 4.45997 4.57105 4.61451 4.66233 4.70821 4.80610 4.84899 4.89819 4.95645 5.00311 5.02392 5.06813 5.08056 5.11141 5.19441 5.21025 5.23803 5.29894 5.31407 5.33903 5.42495 5.51592 5.53997 5.60459 5.91625 6.12187 6.51747 7.35816 8.67182 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012877 B = 0.003811 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.907547 B = 7345.663761 C = 8731.399503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.132 4.132 3 C -0.101 4.101 4 C -0.122 4.122 5 H 0.046 0.954 6 C -0.156 4.156 7 C 0.150 3.850 8 H 0.070 0.930 9 C -0.118 4.118 10 C -0.120 4.120 11 C 0.101 3.899 12 N -1.006 6.006 13 S 2.634 3.366 14 O -0.987 6.987 15 O -0.985 6.985 16 C -0.613 4.613 17 C -0.097 4.097 18 C 0.019 3.981 19 C -0.631 4.631 20 H 0.050 0.950 21 C -0.034 4.034 22 N -0.933 5.933 23 Si 1.116 2.884 24 H -0.280 1.280 25 H -0.270 1.270 26 H -0.269 1.269 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.042 0.958 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.107 0.893 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.140 0.860 44 H 0.145 0.855 45 H 0.064 0.936 46 H 0.062 0.938 47 H -0.001 1.001 48 H 0.000 1.000 49 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.180 17.916 8.137 25.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.170 4.170 3 C -0.139 4.139 4 C -0.142 4.142 5 H 0.064 0.936 6 C -0.213 4.213 7 C 0.044 3.956 8 H 0.088 0.912 9 C -0.157 4.157 10 C -0.159 4.159 11 C -0.023 4.023 12 N -0.845 5.845 13 S 2.732 3.268 14 O -0.978 6.978 15 O -0.975 6.975 16 C -0.743 4.743 17 C -0.136 4.136 18 C -0.019 4.019 19 C -0.669 4.669 20 H 0.069 0.931 21 C -0.232 4.232 22 N -0.570 5.570 23 Si 0.936 3.064 24 H -0.205 1.205 25 H -0.195 1.195 26 H -0.194 1.194 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.109 0.891 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.126 0.874 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.091 0.909 43 H 0.158 0.842 44 H 0.163 0.837 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.017 0.983 48 H 0.019 0.981 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -15.078 16.863 7.033 23.689 hybrid contribution -0.556 0.557 0.430 0.897 sum -15.634 17.420 7.463 24.568 Atomic orbital electron populations 1.21743 0.94886 1.01709 1.02282 1.21614 0.96671 0.97147 1.01576 1.21540 0.92089 0.96934 1.03336 1.21751 0.98000 0.95819 0.98655 0.93552 1.22055 1.01285 1.00766 0.97173 1.21592 0.77405 0.95768 1.00794 0.91154 1.22825 0.98556 0.97749 0.96529 1.22758 0.92630 0.97041 1.03484 1.22375 0.98880 0.94140 0.86932 1.58486 1.16650 1.66521 1.42805 1.04020 0.72670 0.76529 0.73614 1.93514 1.48469 1.68879 1.86897 1.93516 1.69167 1.87683 1.47166 1.30723 1.10158 1.21770 1.11634 1.21172 0.97966 0.97355 0.97148 1.19086 0.95328 0.91851 0.95659 1.22550 1.34528 1.01235 1.08585 0.93131 1.27425 0.98942 0.97102 0.99763 1.70919 1.34357 1.40286 1.11456 0.82960 0.74961 0.74951 0.73498 1.20499 1.19478 1.19389 0.92710 0.93055 0.91546 0.93884 0.91668 0.89139 0.91799 0.92908 0.92959 0.89509 0.88352 0.88429 0.87437 0.90811 0.89907 0.90918 0.84196 0.83727 0.91700 0.91916 0.98298 0.98123 0.93365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.91 71.98 0.71 -1.40 16 2 C -0.13 -2.28 5.69 30.60 0.17 -2.11 16 3 C -0.10 -1.53 4.38 30.60 0.13 -1.40 16 4 C -0.12 -2.36 1.96 -10.80 -0.02 -2.38 16 5 H 0.05 1.16 6.91 -2.39 -0.02 1.14 16 6 C -0.16 -2.72 7.51 71.98 0.54 -2.18 16 7 C 0.15 2.79 2.55 45.34 0.12 2.91 16 8 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 9 C -0.12 -1.25 5.30 31.78 0.17 -1.09 16 10 C -0.12 -1.31 7.08 31.99 0.23 -1.08 16 11 C 0.10 1.73 6.98 86.85 0.61 2.34 16 12 N -1.01 -23.03 2.48 -484.29 -1.20 -24.23 16 13 S 2.63 84.47 5.20 -56.49 -0.29 84.18 16 14 O -0.99 -36.90 17.28 -127.65 -2.21 -39.10 16 15 O -0.98 -37.07 17.46 -127.65 -2.23 -39.30 16 16 C -0.61 -20.09 5.07 71.99 0.36 -19.73 16 17 C -0.10 -4.19 5.16 30.60 0.16 -4.04 16 18 C 0.02 1.00 4.28 29.84 0.13 1.13 16 19 C -0.63 -37.06 9.11 25.60 0.23 -36.83 16 20 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 21 C -0.03 -2.02 5.46 84.66 0.46 -1.56 16 22 N -0.93 -58.00 13.65 21.45 0.29 -57.71 16 23 Si 1.12 50.97 29.90 68.60 2.05 53.02 16 24 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 25 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 26 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 27 H 0.05 0.75 8.14 -2.39 -0.02 0.74 16 28 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.06 1.11 6.73 -2.39 -0.02 1.10 16 32 H 0.09 0.95 7.38 -2.39 -0.02 0.93 16 33 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.05 1.01 6.93 -2.38 -0.02 0.99 16 35 H 0.05 0.98 5.81 -2.39 -0.01 0.96 16 36 H 0.09 1.06 6.26 -2.39 -0.01 1.04 16 37 H 0.10 0.80 5.58 -2.39 -0.01 0.78 16 38 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.08 1.15 8.03 -2.39 -0.02 1.13 16 42 H 0.07 1.40 7.66 -2.39 -0.02 1.39 16 43 H 0.14 4.25 5.95 -2.39 -0.01 4.23 16 44 H 0.14 4.15 8.14 -2.39 -0.02 4.13 16 45 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 46 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 47 H 0.00 -0.07 8.01 -2.39 -0.02 -0.09 16 48 H 0.00 0.03 8.01 -2.39 -0.02 0.01 16 49 H 0.26 16.01 7.22 -92.71 -0.67 15.34 16 Total: -1.00 -76.33 383.68 1.41 -74.92 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 1.00 Total: 15.64 kcal Atomic # 6 Polarization: -71.42 SS G_CDS: 4.00 Total: -67.42 kcal Atomic # 7 Polarization: -81.03 SS G_CDS: -0.91 Total: -81.94 kcal Atomic # 8 Polarization: -73.97 SS G_CDS: -4.43 Total: -78.40 kcal Atomic # 14 Polarization: 50.97 SS G_CDS: 2.05 Total: 53.02 kcal Atomic # 16 Polarization: 84.47 SS G_CDS: -0.29 Total: 84.18 kcal Total: -76.33 1.41 -74.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134585712.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.787 kcal (2) G-P(sol) polarization free energy of solvation -76.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds