Wall clock time and date at job start Tue Mar 31 2020 11:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47368 * 2 1 4 4 C 1.53001 * 109.47368 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.47434 * 180.02562 * 4 3 2 6 6 H 1.08996 * 109.47011 * 55.00005 * 5 4 3 7 7 N 1.46500 * 109.47085 * 294.99964 * 5 4 3 8 8 S 1.65596 * 120.00158 * 114.33313 * 7 5 4 9 9 O 1.42102 * 104.27946 * 308.42190 * 8 7 5 10 10 O 1.42101 * 104.28148 * 180.56286 * 8 7 5 11 11 C 1.81406 * 104.44749 * 64.49264 * 8 7 5 12 12 C 1.53004 * 109.46855 * 174.75297 * 11 8 7 13 13 C 1.53002 * 109.46947 * 179.97438 * 12 11 8 14 14 C 1.50696 * 109.47373 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99605 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00212 * 180.02562 * 14 13 12 17 17 N 1.31510 * 119.99722 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99949 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47378 * 89.99852 * 18 16 14 20 20 H 1.48507 * 109.47023 * 209.99784 * 18 16 14 21 21 H 1.48506 * 109.47309 * 329.99637 * 18 16 14 22 22 C 1.52995 * 109.47140 * 175.00003 * 5 4 3 23 23 C 1.53775 * 113.61598 * 283.12800 * 22 5 4 24 24 C 1.53958 * 87.02050 * 220.04838 * 23 22 5 25 25 C 1.53779 * 87.11133 * 25.36206 * 24 23 22 26 26 H 1.09002 * 109.46935 * 299.99796 * 1 2 3 27 27 H 1.08998 * 109.46978 * 59.99544 * 1 2 3 28 28 H 1.09000 * 109.47492 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46935 * 240.00204 * 2 1 3 30 30 H 1.08998 * 109.46978 * 120.00456 * 2 1 3 31 31 H 1.09002 * 109.46926 * 60.00199 * 3 2 1 32 32 H 1.08998 * 109.47443 * 300.00170 * 3 2 1 33 33 H 1.08998 * 109.47020 * 59.99715 * 4 3 2 34 34 H 1.09008 * 109.46804 * 300.00468 * 4 3 2 35 35 H 0.97003 * 119.99947 * 294.33761 * 7 5 4 36 36 H 1.08992 * 109.46837 * 294.75476 * 11 8 7 37 37 H 1.09002 * 109.46477 * 54.75888 * 11 8 7 38 38 H 1.08994 * 109.47609 * 300.00285 * 12 11 8 39 39 H 1.09000 * 109.46988 * 60.00014 * 12 11 8 40 40 H 1.09004 * 109.47071 * 300.00545 * 13 12 11 41 41 H 1.09005 * 109.46837 * 59.99950 * 13 12 11 42 42 H 0.97000 * 119.99687 * 179.97438 * 17 16 14 43 43 H 1.09007 * 112.85272 * 54.32967 * 22 5 4 44 44 H 1.08996 * 113.61615 * 334.57149 * 23 22 5 45 45 H 1.09000 * 113.61363 * 105.47018 * 23 22 5 46 46 H 1.09002 * 113.53632 * 270.80837 * 24 23 22 47 47 H 1.08999 * 113.74214 * 139.94611 * 24 23 22 48 48 H 1.08995 * 113.61541 * 220.08856 * 25 24 23 49 49 H 1.08999 * 113.61220 * 89.18486 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0801 2.8849 0.0000 6 1 3.6459 3.4234 0.8423 7 7 3.6921 3.5406 -1.2513 8 16 2.6208 4.8031 -1.2269 9 8 1.5166 4.3114 -0.4795 10 8 2.4769 5.1672 -2.5929 11 6 3.4810 6.1089 -0.3072 12 6 2.6388 7.3862 -0.3272 13 6 3.3640 8.4873 0.4490 14 6 2.5343 9.7452 0.4300 15 1 1.5849 9.7580 -0.0847 16 6 2.9877 10.8799 1.0686 17 7 4.1440 10.8643 1.6948 18 14 1.9588 12.4388 1.0456 19 1 1.0448 12.4461 2.2159 20 1 2.8529 13.6229 1.1084 21 1 1.1609 12.4869 -0.2060 22 6 5.6050 2.8865 0.1251 23 6 6.1064 2.6064 1.5515 24 6 7.1755 3.6856 1.3014 25 6 6.2096 4.2930 0.2705 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6768 1.9563 0.8900 32 1 1.6768 1.9564 -0.8899 33 1 3.9330 0.9287 -0.8908 34 1 3.9338 0.9284 0.8891 35 1 4.0627 3.2352 -2.0941 36 1 3.6310 5.7887 0.7237 37 1 4.4476 6.3038 -0.7717 38 1 2.4886 7.7064 -1.3581 39 1 1.6721 7.1912 0.1371 40 1 3.5138 8.1668 1.4800 41 1 4.3309 8.6823 -0.0149 42 1 4.4632 11.6627 2.1438 43 1 6.0929 2.2783 -0.6366 44 1 5.3888 2.8741 2.3270 45 1 6.5172 1.6051 1.6811 46 1 8.0937 3.2951 0.8624 47 1 7.3583 4.3299 2.1613 48 1 6.7036 4.6515 -0.6325 49 1 5.5203 5.0228 0.6952 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152781857.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:25 Heat of formation + Delta-G solvation = -99.834429 kcal Electronic energy + Delta-G solvation = -25797.997528 eV Core-core repulsion = 22272.192613 eV Total energy + Delta-G solvation = -3525.804914 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.59114 -36.93566 -36.34426 -35.67077 -34.67337 -34.24994 -32.19622 -30.46721 -27.84748 -27.35370 -25.70355 -23.91194 -23.72100 -21.52198 -21.10521 -20.72994 -19.57432 -19.13727 -17.32430 -16.70908 -16.55469 -15.79309 -15.60200 -15.52259 -15.08652 -14.71995 -14.47119 -14.15463 -13.89900 -13.73925 -13.00293 -12.77074 -12.48049 -12.46244 -12.36117 -12.20773 -12.03674 -11.92775 -11.79867 -11.75288 -11.47066 -11.30752 -11.22175 -11.18729 -10.95700 -10.92972 -10.85054 -10.74952 -10.56350 -10.51577 -10.36947 -10.33759 -9.95008 -9.50957 -9.27694 -9.04931 -8.40985 -6.06032 -4.08934 0.50468 2.87464 3.30215 3.36381 3.40551 3.96576 4.25674 4.40447 4.42448 4.49354 4.52142 4.72081 4.84048 4.85154 4.95496 4.98756 5.09837 5.17722 5.21329 5.28461 5.30348 5.34414 5.53266 5.58155 5.61990 5.65915 5.72184 5.74079 5.80272 5.83318 5.87461 5.92333 5.94517 5.95405 6.12399 6.13998 6.26851 6.30187 6.37376 6.45199 6.45880 6.86975 6.98856 7.56661 7.66763 7.92085 8.32807 8.97291 9.55806 11.05153 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013485 B = 0.003481 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.901467 B = 8042.640573 C = 9265.436012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.123 4.123 4 C -0.125 4.125 5 C 0.163 3.837 6 H 0.088 0.912 7 N -1.115 6.115 8 S 2.596 3.404 9 O -0.957 6.957 10 O -0.966 6.966 11 C -0.612 4.612 12 C -0.105 4.105 13 C 0.032 3.968 14 C -0.526 4.526 15 H 0.058 0.942 16 C 0.058 3.942 17 N -0.895 5.895 18 Si 0.894 3.106 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.273 1.273 22 C -0.120 4.120 23 C -0.134 4.134 24 C -0.143 4.143 25 C -0.146 4.146 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.414 0.586 36 H 0.125 0.875 37 H 0.129 0.871 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.020 0.980 41 H 0.020 0.980 42 H 0.261 0.739 43 H 0.094 0.906 44 H 0.084 0.916 45 H 0.067 0.933 46 H 0.077 0.923 47 H 0.069 0.931 48 H 0.070 0.930 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.775 -22.389 -2.082 22.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.160 4.160 4 C -0.164 4.164 5 C 0.055 3.945 6 H 0.106 0.894 7 N -0.872 5.872 8 S 2.692 3.308 9 O -0.947 6.947 10 O -0.956 6.956 11 C -0.744 4.744 12 C -0.144 4.144 13 C -0.006 4.006 14 C -0.565 4.565 15 H 0.076 0.924 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.721 3.279 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.197 1.197 22 C -0.140 4.140 23 C -0.172 4.172 24 C -0.180 4.180 25 C -0.184 4.184 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.247 0.753 36 H 0.144 0.856 37 H 0.148 0.852 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.038 0.962 41 H 0.039 0.961 42 H 0.071 0.929 43 H 0.112 0.888 44 H 0.102 0.898 45 H 0.086 0.914 46 H 0.096 0.904 47 H 0.088 0.912 48 H 0.088 0.912 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.932 -22.248 -2.218 22.550 hybrid contribution 0.386 1.016 0.048 1.088 sum 3.318 -21.232 -2.170 21.599 Atomic orbital electron populations 1.21773 0.96018 1.01026 1.02266 1.21525 0.95930 0.97229 1.01338 1.21672 0.94429 0.96144 1.03771 1.21931 0.96447 0.95685 1.02360 1.20845 0.93810 0.94317 0.85508 0.89408 1.55730 1.66301 1.50761 1.14385 1.05405 0.75029 0.75143 0.75256 1.93587 1.49180 1.77842 1.74095 1.93574 1.85613 1.83635 1.32793 1.30682 1.13780 1.15566 1.14334 1.21486 0.97881 0.92383 1.02646 1.19049 0.95532 0.91169 0.94898 1.21257 1.05398 0.95980 1.33818 0.92398 1.25012 0.95098 0.98997 0.95240 1.69955 1.19387 1.29142 1.34923 0.86566 0.80103 0.82634 0.78572 1.20568 1.21181 1.19732 1.22960 0.94522 0.98348 0.98202 1.22949 0.98710 0.99235 0.96285 1.22821 0.97191 0.98288 0.99720 1.23106 0.99085 0.96314 0.99853 0.92574 0.92676 0.93218 0.92531 0.92412 0.91236 0.91263 0.91640 0.90997 0.75291 0.85635 0.85231 0.91529 0.91775 0.96182 0.96139 0.92916 0.88766 0.89789 0.91423 0.90396 0.91173 0.91171 0.89321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 37.16 0.37 -1.07 16 2 C -0.12 -1.11 5.93 -26.73 -0.16 -1.27 16 3 C -0.12 -1.30 4.21 -26.73 -0.11 -1.41 16 4 C -0.13 -1.06 4.86 -26.73 -0.13 -1.19 16 5 C 0.16 1.49 1.84 -67.94 -0.12 1.37 16 6 H 0.09 0.85 7.59 -51.93 -0.39 0.46 16 7 N -1.12 -11.48 4.60 -4.90 -0.02 -11.50 16 8 S 2.60 37.46 5.30 -107.50 -0.57 36.89 16 9 O -0.96 -15.89 15.74 -57.54 -0.91 -16.80 16 10 O -0.97 -17.09 18.08 -57.54 -1.04 -18.13 16 11 C -0.61 -9.29 4.99 37.16 0.19 -9.11 16 12 C -0.10 -2.11 5.16 -26.73 -0.14 -2.24 16 13 C 0.03 0.80 4.97 -27.88 -0.14 0.66 16 14 C -0.53 -14.79 9.11 -34.44 -0.31 -15.11 16 15 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 18 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 22 C -0.12 -0.96 3.31 -89.81 -0.30 -1.26 16 23 C -0.13 -1.02 7.39 -25.83 -0.19 -1.21 16 24 C -0.14 -1.21 8.09 -25.83 -0.21 -1.42 16 25 C -0.15 -1.38 7.43 -25.92 -0.19 -1.57 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.86 6.69 -51.93 -0.35 0.51 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.53 7.92 -51.92 -0.41 0.11 16 35 H 0.41 3.52 8.92 -34.47 -0.31 3.21 16 36 H 0.13 1.69 7.16 -51.93 -0.37 1.32 16 37 H 0.13 1.77 7.82 -51.92 -0.41 1.37 16 38 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 43 H 0.09 0.67 8.14 -51.92 -0.42 0.24 16 44 H 0.08 0.65 8.04 -51.93 -0.42 0.23 16 45 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.09 0.93 5.71 -51.93 -0.30 0.63 16 LS Contribution 396.70 15.07 5.98 5.98 Total: -1.00 -33.50 396.70 -11.65 -45.15 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -9.26 Total: 0.86 kcal Atomic # 6 Polarization: -31.73 SS G_CDS: -1.55 Total: -33.27 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: 0.71 Total: -37.22 kcal Atomic # 8 Polarization: -32.99 SS G_CDS: -1.95 Total: -34.93 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 37.46 SS G_CDS: -0.57 Total: 36.89 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.50 -11.65 -45.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152781857.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.680 kcal (2) G-P(sol) polarization free energy of solvation -33.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds