Wall clock time and date at job start Tue Mar 31 2020 11:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47368 * 2 1 4 4 C 1.53001 * 109.47368 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.47434 * 180.02562 * 4 3 2 6 6 H 1.08996 * 109.47011 * 55.00005 * 5 4 3 7 7 N 1.46500 * 109.47085 * 294.99964 * 5 4 3 8 8 S 1.65596 * 120.00158 * 114.33313 * 7 5 4 9 9 O 1.42102 * 104.27946 * 308.42190 * 8 7 5 10 10 O 1.42101 * 104.28148 * 180.56286 * 8 7 5 11 11 C 1.81406 * 104.44749 * 64.49264 * 8 7 5 12 12 C 1.53004 * 109.46855 * 174.75297 * 11 8 7 13 13 C 1.53002 * 109.46947 * 179.97438 * 12 11 8 14 14 C 1.50696 * 109.47373 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99605 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00212 * 180.02562 * 14 13 12 17 17 N 1.31510 * 119.99722 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99949 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47378 * 89.99852 * 18 16 14 20 20 H 1.48507 * 109.47023 * 209.99784 * 18 16 14 21 21 H 1.48506 * 109.47309 * 329.99637 * 18 16 14 22 22 C 1.52995 * 109.47140 * 175.00003 * 5 4 3 23 23 C 1.53775 * 113.61598 * 283.12800 * 22 5 4 24 24 C 1.53958 * 87.02050 * 220.04838 * 23 22 5 25 25 C 1.53779 * 87.11133 * 25.36206 * 24 23 22 26 26 H 1.09002 * 109.46935 * 299.99796 * 1 2 3 27 27 H 1.08998 * 109.46978 * 59.99544 * 1 2 3 28 28 H 1.09000 * 109.47492 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46935 * 240.00204 * 2 1 3 30 30 H 1.08998 * 109.46978 * 120.00456 * 2 1 3 31 31 H 1.09002 * 109.46926 * 60.00199 * 3 2 1 32 32 H 1.08998 * 109.47443 * 300.00170 * 3 2 1 33 33 H 1.08998 * 109.47020 * 59.99715 * 4 3 2 34 34 H 1.09008 * 109.46804 * 300.00468 * 4 3 2 35 35 H 0.97003 * 119.99947 * 294.33761 * 7 5 4 36 36 H 1.08992 * 109.46837 * 294.75476 * 11 8 7 37 37 H 1.09002 * 109.46477 * 54.75888 * 11 8 7 38 38 H 1.08994 * 109.47609 * 300.00285 * 12 11 8 39 39 H 1.09000 * 109.46988 * 60.00014 * 12 11 8 40 40 H 1.09004 * 109.47071 * 300.00545 * 13 12 11 41 41 H 1.09005 * 109.46837 * 59.99950 * 13 12 11 42 42 H 0.97000 * 119.99687 * 179.97438 * 17 16 14 43 43 H 1.09007 * 112.85272 * 54.32967 * 22 5 4 44 44 H 1.08996 * 113.61615 * 334.57149 * 23 22 5 45 45 H 1.09000 * 113.61363 * 105.47018 * 23 22 5 46 46 H 1.09002 * 113.53632 * 270.80837 * 24 23 22 47 47 H 1.08999 * 113.74214 * 139.94611 * 24 23 22 48 48 H 1.08995 * 113.61541 * 220.08856 * 25 24 23 49 49 H 1.08999 * 113.61220 * 89.18486 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0801 2.8849 0.0000 6 1 3.6459 3.4234 0.8423 7 7 3.6921 3.5406 -1.2513 8 16 2.6208 4.8031 -1.2269 9 8 1.5166 4.3114 -0.4795 10 8 2.4769 5.1672 -2.5929 11 6 3.4810 6.1089 -0.3072 12 6 2.6388 7.3862 -0.3272 13 6 3.3640 8.4873 0.4490 14 6 2.5343 9.7452 0.4300 15 1 1.5849 9.7580 -0.0847 16 6 2.9877 10.8799 1.0686 17 7 4.1440 10.8643 1.6948 18 14 1.9588 12.4388 1.0456 19 1 1.0448 12.4461 2.2159 20 1 2.8529 13.6229 1.1084 21 1 1.1609 12.4869 -0.2060 22 6 5.6050 2.8865 0.1251 23 6 6.1064 2.6064 1.5515 24 6 7.1755 3.6856 1.3014 25 6 6.2096 4.2930 0.2705 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6768 1.9563 0.8900 32 1 1.6768 1.9564 -0.8899 33 1 3.9330 0.9287 -0.8908 34 1 3.9338 0.9284 0.8891 35 1 4.0627 3.2352 -2.0941 36 1 3.6310 5.7887 0.7237 37 1 4.4476 6.3038 -0.7717 38 1 2.4886 7.7064 -1.3581 39 1 1.6721 7.1912 0.1371 40 1 3.5138 8.1668 1.4800 41 1 4.3309 8.6823 -0.0149 42 1 4.4632 11.6627 2.1438 43 1 6.0929 2.2783 -0.6366 44 1 5.3888 2.8741 2.3270 45 1 6.5172 1.6051 1.6811 46 1 8.0937 3.2951 0.8624 47 1 7.3583 4.3299 2.1613 48 1 6.7036 4.6515 -0.6325 49 1 5.5203 5.0228 0.6952 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152781857.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:24 Heat of formation + Delta-G solvation = -120.484548 kcal Electronic energy + Delta-G solvation = -25798.892984 eV Core-core repulsion = 22272.192613 eV Total energy + Delta-G solvation = -3526.700371 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.29560 -38.17786 -37.22582 -36.90949 -36.46977 -35.05895 -34.18112 -31.26007 -29.68857 -28.10503 -26.40888 -25.60533 -24.59579 -22.51215 -22.26447 -21.80623 -20.49635 -20.12276 -18.65806 -18.38205 -17.59773 -17.20385 -16.66062 -16.48710 -16.25666 -15.95824 -15.69014 -15.40978 -14.69616 -14.52048 -14.42630 -14.11081 -13.76328 -13.54644 -13.38721 -13.24513 -13.24249 -13.13679 -13.04373 -12.95228 -12.78014 -12.74117 -12.59330 -12.22207 -12.19245 -11.97415 -11.92176 -11.77438 -11.68115 -11.60497 -11.36387 -11.29999 -11.21993 -11.03130 -10.96392 -10.58326 -10.09831 -8.23508 -6.34492 -0.70985 1.39336 1.39981 1.51424 1.81003 2.38980 2.76060 3.09980 3.25054 3.53225 3.73411 3.80755 3.83764 3.90575 4.06078 4.13013 4.16350 4.24560 4.26987 4.36620 4.45610 4.56193 4.58401 4.64967 4.79106 4.88155 4.95592 4.97033 4.98567 5.02031 5.04101 5.05170 5.14074 5.17848 5.18513 5.24597 5.26188 5.37694 5.44203 5.44587 5.56726 5.61948 5.65603 5.71353 5.78491 6.18893 6.21213 6.80924 7.34813 8.87898 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013485 B = 0.003481 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.901467 B = 8042.640573 C = 9265.436012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.120 4.120 3 C -0.126 4.126 4 C -0.119 4.119 5 C 0.156 3.844 6 H 0.081 0.919 7 N -1.098 6.098 8 S 2.623 3.377 9 O -0.978 6.978 10 O -0.997 6.997 11 C -0.613 4.613 12 C -0.104 4.104 13 C 0.034 3.966 14 C -0.553 4.553 15 H 0.059 0.941 16 C 0.004 3.996 17 N -0.929 5.929 18 Si 0.962 3.038 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.265 1.265 22 C -0.108 4.108 23 C -0.129 4.129 24 C -0.145 4.145 25 C -0.161 4.161 26 H 0.047 0.953 27 H 0.042 0.958 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.051 0.949 32 H 0.046 0.954 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.426 0.574 36 H 0.141 0.859 37 H 0.144 0.856 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.003 0.997 41 H 0.002 0.998 42 H 0.265 0.735 43 H 0.113 0.887 44 H 0.080 0.920 45 H 0.085 0.915 46 H 0.089 0.911 47 H 0.059 0.941 48 H 0.069 0.931 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.222 -24.038 -2.263 24.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.158 4.158 3 C -0.164 4.164 4 C -0.158 4.158 5 C 0.049 3.951 6 H 0.099 0.901 7 N -0.859 5.859 8 S 2.718 3.282 9 O -0.968 6.968 10 O -0.987 6.987 11 C -0.743 4.743 12 C -0.143 4.143 13 C -0.004 4.004 14 C -0.591 4.591 15 H 0.077 0.923 16 C -0.195 4.195 17 N -0.568 5.568 18 Si 0.786 3.214 19 H -0.197 1.197 20 H -0.205 1.205 21 H -0.189 1.189 22 C -0.127 4.127 23 C -0.167 4.167 24 C -0.182 4.182 25 C -0.198 4.198 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.099 0.901 34 H 0.109 0.891 35 H 0.262 0.738 36 H 0.159 0.841 37 H 0.162 0.838 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.021 0.979 41 H 0.020 0.980 42 H 0.074 0.926 43 H 0.131 0.869 44 H 0.099 0.901 45 H 0.104 0.896 46 H 0.108 0.892 47 H 0.078 0.922 48 H 0.088 0.912 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.378 -23.894 -2.406 24.251 hybrid contribution 0.283 1.483 0.130 1.516 sum 3.661 -22.411 -2.276 22.822 Atomic orbital electron populations 1.21812 0.96659 1.01708 1.01286 1.21521 0.95419 0.96317 1.02504 1.21678 0.96121 0.96808 1.01818 1.21914 0.94726 0.95106 1.04061 1.21072 0.94864 0.94759 0.84422 0.90121 1.55321 1.65722 1.49111 1.15724 1.04380 0.74883 0.75086 0.73880 1.93565 1.50645 1.78139 1.74422 1.93527 1.86304 1.84451 1.34460 1.30657 1.13754 1.13840 1.16055 1.21286 0.98203 0.93255 1.01566 1.18927 0.94905 0.92151 0.94421 1.21739 1.05912 0.97516 1.33977 0.92273 1.25919 0.96301 1.02512 0.94731 1.70067 1.20928 1.30248 1.35602 0.85495 0.78554 0.78352 0.78975 1.19677 1.20494 1.18941 1.22914 0.93250 0.97469 0.99109 1.22943 0.98142 0.99835 0.95776 1.22855 0.97795 0.98464 0.99086 1.23179 0.99498 0.96981 1.00185 0.93387 0.93871 0.91705 0.91473 0.91005 0.93023 0.93471 0.90050 0.89068 0.73770 0.84114 0.83809 0.91764 0.91721 0.97910 0.97960 0.92629 0.86903 0.90143 0.89620 0.89228 0.92248 0.91197 0.90902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 9.91 71.98 0.71 -2.10 16 2 C -0.12 -1.95 5.93 30.59 0.18 -1.76 16 3 C -0.13 -2.52 4.21 30.59 0.13 -2.39 16 4 C -0.12 -1.69 4.86 30.59 0.15 -1.54 16 5 C 0.16 2.56 1.84 44.99 0.08 2.64 16 6 H 0.08 1.47 7.59 -2.39 -0.02 1.46 16 7 N -1.10 -21.04 4.60 -169.41 -0.78 -21.82 16 8 S 2.62 74.95 5.30 -56.49 -0.30 74.65 16 9 O -0.98 -32.55 15.74 -127.65 -2.01 -34.56 16 10 O -1.00 -35.08 18.08 -127.65 -2.31 -37.39 16 11 C -0.61 -18.68 4.99 71.98 0.36 -18.33 16 12 C -0.10 -4.28 5.16 30.60 0.16 -4.12 16 13 C 0.03 1.77 4.97 29.85 0.15 1.92 16 14 C -0.55 -31.71 9.11 25.60 0.23 -31.47 16 15 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 16 C 0.00 0.21 5.46 84.66 0.46 0.67 16 17 N -0.93 -55.75 13.29 21.45 0.28 -55.47 16 18 Si 0.96 44.38 29.54 68.60 2.03 46.40 16 19 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 20 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 21 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 22 C -0.11 -1.44 3.31 -10.27 -0.03 -1.47 16 23 C -0.13 -1.64 7.39 31.18 0.23 -1.41 16 24 C -0.14 -2.23 8.09 31.18 0.25 -1.98 16 25 C -0.16 -2.83 7.43 31.12 0.23 -2.60 16 26 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.05 1.19 8.14 -2.39 -0.02 1.18 16 32 H 0.05 1.14 6.69 -2.39 -0.02 1.12 16 33 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.09 1.00 7.92 -2.38 -0.02 0.98 16 35 H 0.43 6.37 8.92 -96.74 -0.86 5.51 16 36 H 0.14 3.82 7.16 -2.39 -0.02 3.80 16 37 H 0.14 3.93 7.82 -2.39 -0.02 3.91 16 38 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 39 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 40 H 0.00 0.14 8.14 -2.38 -0.02 0.12 16 41 H 0.00 0.11 8.14 -2.38 -0.02 0.09 16 42 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 43 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 44 H 0.08 1.10 8.04 -2.39 -0.02 1.08 16 45 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 49 H 0.07 1.51 5.71 -2.39 -0.01 1.49 16 Total: -1.00 -72.61 396.70 0.24 -72.37 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: 0.03 Total: 19.77 kcal Atomic # 6 Polarization: -67.25 SS G_CDS: 3.30 Total: -63.95 kcal Atomic # 7 Polarization: -76.79 SS G_CDS: -0.49 Total: -77.29 kcal Atomic # 8 Polarization: -67.63 SS G_CDS: -4.32 Total: -71.95 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 16 Polarization: 74.95 SS G_CDS: -0.30 Total: 74.65 kcal Total: -72.61 0.24 -72.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152781857.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.115 kcal (2) G-P(sol) polarization free energy of solvation -72.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds