Wall clock time and date at job start Tue Mar 31 2020 11:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46704 * 2 1 4 4 C 1.52999 * 109.46704 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47085 * 179.97438 * 4 3 2 6 6 H 1.09005 * 109.47212 * 305.00218 * 5 4 3 7 7 N 1.46501 * 109.46751 * 64.99724 * 5 4 3 8 8 S 1.65599 * 120.00066 * 235.21718 * 7 5 4 9 9 O 1.42102 * 104.27563 * 181.86565 * 8 7 5 10 10 O 1.42104 * 104.27447 * 309.71989 * 8 7 5 11 11 C 1.81392 * 104.45125 * 65.79105 * 8 7 5 12 12 C 1.52993 * 109.47361 * 179.97438 * 11 8 7 13 13 C 1.52996 * 109.47492 * 180.02562 * 12 11 8 14 14 C 1.50701 * 109.47515 * 180.02562 * 13 12 11 15 15 H 1.07996 * 119.99883 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99901 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00405 * 359.97438 * 16 14 13 18 18 Si 1.86810 * 119.99775 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47007 * 60.00040 * 18 16 14 20 20 H 1.48495 * 109.47055 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.46712 * 299.99815 * 18 16 14 22 22 C 1.52998 * 109.47246 * 185.00089 * 5 4 3 23 23 C 1.53775 * 113.61275 * 279.04177 * 22 5 4 24 24 C 1.53779 * 87.08334 * 220.02165 * 23 22 5 25 25 C 1.53780 * 87.08124 * 25.43553 * 24 23 22 26 26 H 1.08999 * 109.47171 * 60.00471 * 1 2 3 27 27 H 1.09008 * 109.46526 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47165 * 300.00124 * 1 2 3 29 29 H 1.09001 * 109.47165 * 239.99876 * 2 1 3 30 30 H 1.08999 * 109.47171 * 119.99529 * 2 1 3 31 31 H 1.08999 * 109.46922 * 299.99681 * 3 2 1 32 32 H 1.08992 * 109.47553 * 59.99755 * 3 2 1 33 33 H 1.08996 * 109.47753 * 299.99989 * 4 3 2 34 34 H 1.08998 * 109.47422 * 60.00332 * 4 3 2 35 35 H 0.96997 * 119.99888 * 55.21990 * 7 5 4 36 36 H 1.09000 * 109.47397 * 299.99979 * 11 8 7 37 37 H 1.09006 * 109.46811 * 59.99926 * 11 8 7 38 38 H 1.09002 * 109.47416 * 300.00101 * 12 11 8 39 39 H 1.09000 * 109.47158 * 59.99815 * 12 11 8 40 40 H 1.09000 * 109.47118 * 300.00069 * 13 12 11 41 41 H 1.09000 * 109.47284 * 59.99631 * 13 12 11 42 42 H 0.97003 * 120.00002 * 180.02562 * 17 16 14 43 43 H 1.08999 * 112.84984 * 50.35326 * 22 5 4 44 44 H 1.08998 * 113.61697 * 334.56873 * 23 22 5 45 45 H 1.09003 * 113.61470 * 105.46961 * 23 22 5 46 46 H 1.09004 * 113.61299 * 270.88965 * 24 23 22 47 47 H 1.09000 * 113.69550 * 139.99406 * 24 23 22 48 48 H 1.09006 * 113.61434 * 220.02742 * 25 24 23 49 49 H 1.08994 * 113.61839 * 89.11752 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0799 2.8851 -0.0013 6 1 3.6449 3.4240 -0.8431 7 7 3.6928 3.5404 1.2505 8 16 2.8330 4.9552 1.2130 9 8 2.6820 5.3098 2.5808 10 8 3.5611 5.7841 0.3173 11 6 1.2326 4.4935 0.4946 12 6 0.3370 5.7307 0.4067 13 6 -1.0131 5.3412 -0.1986 14 6 -1.8951 6.5600 -0.2858 15 1 -1.5294 7.5167 0.0567 16 6 -3.1687 6.4537 -0.8028 17 7 -3.6139 5.2888 -1.2203 18 14 -4.2618 7.9647 -0.9115 19 1 -3.6102 8.9862 -1.7700 20 1 -5.5717 7.5868 -1.5000 21 1 -4.4721 8.5223 0.4487 22 6 5.6047 2.8870 -0.1277 23 6 6.3332 2.6264 1.2012 24 6 7.3457 3.6988 0.7659 25 6 6.2233 4.2947 -0.1001 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 3.9337 0.9287 0.8890 34 1 3.9329 0.9290 -0.8909 35 1 3.9401 3.1456 2.1013 36 1 1.3870 4.0846 -0.5039 37 1 0.7545 3.7433 1.1246 38 1 0.1826 6.1393 1.4054 39 1 0.8149 6.4812 -0.2229 40 1 -0.8591 4.9324 -1.1972 41 1 -1.4908 4.5908 0.4314 42 1 -4.5099 5.2141 -1.5844 43 1 5.9618 2.2691 -0.9515 44 1 5.7520 2.9058 2.0800 45 1 6.7610 1.6266 1.2759 46 1 8.1800 3.3023 0.1872 47 1 7.6661 4.3534 1.5764 48 1 6.5625 4.6416 -1.0762 49 1 5.6120 5.0301 0.4228 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152781966.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:29 Heat of formation + Delta-G solvation = -94.416528 kcal Electronic energy + Delta-G solvation = -26069.955734 eV Core-core repulsion = 22544.385758 eV Total energy + Delta-G solvation = -3525.569977 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.72089 -36.85369 -36.40404 -35.73406 -34.66692 -34.06841 -32.18915 -30.49209 -27.88583 -27.37829 -25.74188 -23.91240 -23.74711 -21.52921 -21.17898 -20.55327 -19.59303 -18.92991 -17.54122 -16.77947 -16.36128 -15.92340 -15.70757 -15.48442 -15.11181 -14.61583 -14.48504 -14.12260 -13.92844 -13.62808 -12.98773 -12.83889 -12.61111 -12.47689 -12.36331 -12.21519 -11.92668 -11.88056 -11.78711 -11.75046 -11.41916 -11.28642 -11.20867 -11.19863 -11.02931 -10.90325 -10.77462 -10.65755 -10.57848 -10.49109 -10.35250 -10.23445 -9.93650 -9.54713 -9.29437 -9.06360 -8.40285 -6.05528 -4.08529 0.48489 2.87109 3.32110 3.35973 3.39219 3.95124 4.26056 4.36482 4.42534 4.55650 4.57662 4.74627 4.82785 4.87629 4.93383 5.00551 5.14915 5.17583 5.24511 5.29727 5.31015 5.34011 5.52335 5.58287 5.64213 5.71476 5.72124 5.77506 5.79574 5.83248 5.90090 5.96820 5.98964 6.01216 6.16981 6.20524 6.26319 6.29644 6.34684 6.46185 6.49255 6.87355 6.96801 7.56999 7.67350 7.92384 8.33136 8.97399 9.56131 11.05513 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014139 B = 0.003708 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.832973 B = 7550.214700 C = 8965.069111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.120 4.120 3 C -0.133 4.133 4 C -0.126 4.126 5 C 0.162 3.838 6 H 0.091 0.909 7 N -1.115 6.115 8 S 2.594 3.406 9 O -0.966 6.966 10 O -0.958 6.958 11 C -0.611 4.611 12 C -0.105 4.105 13 C 0.033 3.967 14 C -0.527 4.527 15 H 0.057 0.943 16 C 0.059 3.941 17 N -0.895 5.895 18 Si 0.893 3.107 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 C -0.120 4.120 23 C -0.133 4.133 24 C -0.146 4.146 25 C -0.141 4.141 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.413 0.587 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.020 0.980 41 H 0.020 0.980 42 H 0.262 0.738 43 H 0.097 0.903 44 H 0.082 0.918 45 H 0.063 0.937 46 H 0.075 0.925 47 H 0.064 0.936 48 H 0.064 0.936 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.498 -11.779 2.607 22.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.157 4.157 3 C -0.171 4.171 4 C -0.165 4.165 5 C 0.054 3.946 6 H 0.109 0.891 7 N -0.873 5.873 8 S 2.690 3.310 9 O -0.956 6.956 10 O -0.947 6.947 11 C -0.742 4.742 12 C -0.144 4.144 13 C -0.005 4.005 14 C -0.565 4.565 15 H 0.075 0.925 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.721 3.279 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.201 1.201 22 C -0.140 4.140 23 C -0.171 4.171 24 C -0.183 4.183 25 C -0.178 4.178 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.248 0.752 36 H 0.145 0.855 37 H 0.147 0.853 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.038 0.962 41 H 0.038 0.962 42 H 0.071 0.929 43 H 0.115 0.885 44 H 0.101 0.899 45 H 0.082 0.918 46 H 0.094 0.906 47 H 0.082 0.918 48 H 0.083 0.917 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 18.638 -10.943 2.661 21.777 hybrid contribution -1.047 -0.010 -0.048 1.048 sum 17.591 -10.953 2.614 20.886 Atomic orbital electron populations 1.21805 0.95528 1.01418 1.02705 1.21484 0.96179 0.96558 1.01514 1.21867 0.94898 0.97444 1.02850 1.21961 0.95953 0.95777 1.02829 1.20679 0.94668 0.93779 0.85470 0.89110 1.55832 1.71973 1.45752 1.13722 1.05453 0.77045 0.73641 0.74843 1.93577 1.87181 1.81540 1.33346 1.93567 1.68928 1.64923 1.67324 1.30687 1.19873 1.10479 1.13201 1.21490 0.98538 0.92196 1.02211 1.19034 0.88533 0.97020 0.95957 1.21220 0.98731 0.95037 1.41560 0.92472 1.25004 0.97986 0.96020 0.95262 1.69943 1.17950 1.23485 1.41998 0.86632 0.79644 0.83141 0.78479 1.20122 1.21255 1.20125 1.22916 0.93907 0.98569 0.98594 1.22878 0.97821 0.98802 0.97583 1.22814 0.96908 0.98576 1.00030 1.23094 0.97460 0.96628 1.00621 0.92205 0.93077 0.92485 0.92279 0.92372 0.91345 0.91481 0.91218 0.90829 0.75162 0.85456 0.85254 0.91725 0.91637 0.96155 0.96154 0.92869 0.88521 0.89941 0.91821 0.90598 0.91755 0.91703 0.88349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.91 37.16 0.37 -1.30 16 2 C -0.12 -1.08 5.93 -26.73 -0.16 -1.24 16 3 C -0.13 -1.24 4.26 -26.73 -0.11 -1.35 16 4 C -0.13 -0.96 4.87 -26.73 -0.13 -1.09 16 5 C 0.16 1.46 2.18 -67.93 -0.15 1.31 16 6 H 0.09 0.87 7.65 -51.93 -0.40 0.47 16 7 N -1.11 -11.33 3.58 -4.89 -0.02 -11.35 16 8 S 2.59 37.16 5.28 -107.50 -0.57 36.59 16 9 O -0.97 -16.89 18.08 -57.54 -1.04 -17.93 16 10 O -0.96 -15.99 15.55 -57.54 -0.89 -16.88 16 11 C -0.61 -9.21 4.88 37.15 0.18 -9.03 16 12 C -0.10 -2.10 5.16 -26.74 -0.14 -2.24 16 13 C 0.03 0.82 4.97 -27.88 -0.14 0.68 16 14 C -0.53 -14.78 9.11 -34.44 -0.31 -15.10 16 15 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 18 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 C -0.12 -1.03 3.59 -89.81 -0.32 -1.35 16 23 C -0.13 -1.07 7.45 -25.92 -0.19 -1.26 16 24 C -0.15 -1.28 8.08 -25.92 -0.21 -1.49 16 25 C -0.14 -1.49 7.52 -25.92 -0.19 -1.69 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.69 7.43 -51.93 -0.39 0.30 16 32 H 0.07 0.65 6.01 -51.93 -0.31 0.34 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.41 3.50 7.30 -34.47 -0.25 3.25 16 36 H 0.13 1.70 7.11 -51.92 -0.37 1.33 16 37 H 0.13 1.76 7.07 -51.92 -0.37 1.40 16 38 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.08 0.67 6.06 -51.93 -0.31 0.35 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.10 1.28 5.36 -51.93 -0.28 1.00 16 LS Contribution 390.33 15.07 5.88 5.88 Total: -1.00 -33.40 390.33 -11.51 -44.91 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -8.98 Total: 1.46 kcal Atomic # 6 Polarization: -31.97 SS G_CDS: -1.61 Total: -33.58 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.72 Total: -36.98 kcal Atomic # 8 Polarization: -32.87 SS G_CDS: -1.94 Total: -34.81 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 37.16 SS G_CDS: -0.57 Total: 36.59 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.40 -11.51 -44.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152781966.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.503 kcal (2) G-P(sol) polarization free energy of solvation -33.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds