Wall clock time and date at job start Tue Mar 31 2020 11:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46704 * 2 1 4 4 C 1.52999 * 109.46704 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47085 * 179.97438 * 4 3 2 6 6 H 1.09005 * 109.47212 * 305.00218 * 5 4 3 7 7 N 1.46501 * 109.46751 * 64.99724 * 5 4 3 8 8 S 1.65599 * 120.00066 * 235.21718 * 7 5 4 9 9 O 1.42102 * 104.27563 * 181.86565 * 8 7 5 10 10 O 1.42104 * 104.27447 * 309.71989 * 8 7 5 11 11 C 1.81392 * 104.45125 * 65.79105 * 8 7 5 12 12 C 1.52993 * 109.47361 * 179.97438 * 11 8 7 13 13 C 1.52996 * 109.47492 * 180.02562 * 12 11 8 14 14 C 1.50701 * 109.47515 * 180.02562 * 13 12 11 15 15 H 1.07996 * 119.99883 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99901 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00405 * 359.97438 * 16 14 13 18 18 Si 1.86810 * 119.99775 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47007 * 60.00040 * 18 16 14 20 20 H 1.48495 * 109.47055 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.46712 * 299.99815 * 18 16 14 22 22 C 1.52998 * 109.47246 * 185.00089 * 5 4 3 23 23 C 1.53775 * 113.61275 * 279.04177 * 22 5 4 24 24 C 1.53779 * 87.08334 * 220.02165 * 23 22 5 25 25 C 1.53780 * 87.08124 * 25.43553 * 24 23 22 26 26 H 1.08999 * 109.47171 * 60.00471 * 1 2 3 27 27 H 1.09008 * 109.46526 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47165 * 300.00124 * 1 2 3 29 29 H 1.09001 * 109.47165 * 239.99876 * 2 1 3 30 30 H 1.08999 * 109.47171 * 119.99529 * 2 1 3 31 31 H 1.08999 * 109.46922 * 299.99681 * 3 2 1 32 32 H 1.08992 * 109.47553 * 59.99755 * 3 2 1 33 33 H 1.08996 * 109.47753 * 299.99989 * 4 3 2 34 34 H 1.08998 * 109.47422 * 60.00332 * 4 3 2 35 35 H 0.96997 * 119.99888 * 55.21990 * 7 5 4 36 36 H 1.09000 * 109.47397 * 299.99979 * 11 8 7 37 37 H 1.09006 * 109.46811 * 59.99926 * 11 8 7 38 38 H 1.09002 * 109.47416 * 300.00101 * 12 11 8 39 39 H 1.09000 * 109.47158 * 59.99815 * 12 11 8 40 40 H 1.09000 * 109.47118 * 300.00069 * 13 12 11 41 41 H 1.09000 * 109.47284 * 59.99631 * 13 12 11 42 42 H 0.97003 * 120.00002 * 180.02562 * 17 16 14 43 43 H 1.08999 * 112.84984 * 50.35326 * 22 5 4 44 44 H 1.08998 * 113.61697 * 334.56873 * 23 22 5 45 45 H 1.09003 * 113.61470 * 105.46961 * 23 22 5 46 46 H 1.09004 * 113.61299 * 270.88965 * 24 23 22 47 47 H 1.09000 * 113.69550 * 139.99406 * 24 23 22 48 48 H 1.09006 * 113.61434 * 220.02742 * 25 24 23 49 49 H 1.08994 * 113.61839 * 89.11752 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0799 2.8851 -0.0013 6 1 3.6449 3.4240 -0.8431 7 7 3.6928 3.5404 1.2505 8 16 2.8330 4.9552 1.2130 9 8 2.6820 5.3098 2.5808 10 8 3.5611 5.7841 0.3173 11 6 1.2326 4.4935 0.4946 12 6 0.3370 5.7307 0.4067 13 6 -1.0131 5.3412 -0.1986 14 6 -1.8951 6.5600 -0.2858 15 1 -1.5294 7.5167 0.0567 16 6 -3.1687 6.4537 -0.8028 17 7 -3.6139 5.2888 -1.2203 18 14 -4.2618 7.9647 -0.9115 19 1 -3.6102 8.9862 -1.7700 20 1 -5.5717 7.5868 -1.5000 21 1 -4.4721 8.5223 0.4487 22 6 5.6047 2.8870 -0.1277 23 6 6.3332 2.6264 1.2012 24 6 7.3457 3.6988 0.7659 25 6 6.2233 4.2947 -0.1001 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 3.9337 0.9287 0.8890 34 1 3.9329 0.9290 -0.8909 35 1 3.9401 3.1456 2.1013 36 1 1.3870 4.0846 -0.5039 37 1 0.7545 3.7433 1.1246 38 1 0.1826 6.1393 1.4054 39 1 0.8149 6.4812 -0.2229 40 1 -0.8591 4.9324 -1.1972 41 1 -1.4908 4.5908 0.4314 42 1 -4.5099 5.2141 -1.5844 43 1 5.9618 2.2691 -0.9515 44 1 5.7520 2.9058 2.0800 45 1 6.7610 1.6266 1.2759 46 1 8.1800 3.3023 0.1872 47 1 7.6661 4.3534 1.5764 48 1 6.5625 4.6416 -1.0762 49 1 5.6120 5.0301 0.4228 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152781966.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:28 Heat of formation + Delta-G solvation = -114.788138 kcal Electronic energy + Delta-G solvation = -26070.839114 eV Core-core repulsion = 22544.385758 eV Total energy + Delta-G solvation = -3526.453356 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.44457 -38.14232 -37.16007 -37.02822 -36.43575 -34.89688 -34.16308 -31.29414 -29.68477 -28.18343 -26.45139 -25.63359 -24.62198 -22.56460 -22.26567 -21.65230 -20.61939 -19.77450 -18.75086 -18.51943 -17.55381 -17.14009 -16.67385 -16.51255 -16.32277 -16.05942 -15.73901 -15.20339 -14.77768 -14.47933 -14.36469 -14.06759 -13.80735 -13.61032 -13.53262 -13.36685 -13.17860 -13.11334 -12.99551 -12.87184 -12.75772 -12.72300 -12.63128 -12.24916 -12.13375 -11.99630 -11.92640 -11.77029 -11.67721 -11.45574 -11.35419 -11.28553 -11.20479 -10.97350 -10.90871 -10.57153 -10.14854 -8.22586 -6.33627 -0.72109 1.39516 1.41943 1.49825 1.81401 2.39406 2.75621 3.10772 3.22605 3.55182 3.73005 3.85155 3.86379 3.89863 4.06392 4.16648 4.18058 4.21950 4.31396 4.37675 4.47961 4.56673 4.58784 4.64499 4.79984 4.90519 4.91647 4.99038 5.01786 5.02544 5.06046 5.06612 5.12741 5.15510 5.21663 5.24908 5.29099 5.39206 5.44827 5.48704 5.56788 5.60899 5.63123 5.77010 5.79230 6.19407 6.20192 6.81528 7.35554 8.88440 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014139 B = 0.003708 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.832973 B = 7550.214700 C = 8965.069111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.115 4.115 3 C -0.141 4.141 4 C -0.115 4.115 5 C 0.154 3.846 6 H 0.085 0.915 7 N -1.097 6.097 8 S 2.622 3.378 9 O -0.997 6.997 10 O -0.980 6.980 11 C -0.612 4.612 12 C -0.104 4.104 13 C 0.035 3.965 14 C -0.555 4.555 15 H 0.059 0.941 16 C 0.005 3.995 17 N -0.928 5.928 18 Si 0.961 3.039 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.268 1.268 22 C -0.111 4.111 23 C -0.129 4.129 24 C -0.144 4.144 25 C -0.159 4.159 26 H 0.041 0.959 27 H 0.060 0.940 28 H 0.044 0.956 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.425 0.575 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.003 0.997 41 H 0.002 0.998 42 H 0.265 0.735 43 H 0.118 0.882 44 H 0.079 0.921 45 H 0.083 0.917 46 H 0.090 0.910 47 H 0.057 0.943 48 H 0.060 0.940 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.873 -12.905 2.708 23.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.153 4.153 3 C -0.178 4.178 4 C -0.154 4.154 5 C 0.047 3.953 6 H 0.103 0.897 7 N -0.860 5.860 8 S 2.717 3.283 9 O -0.987 6.987 10 O -0.970 6.970 11 C -0.742 4.742 12 C -0.144 4.144 13 C -0.003 4.003 14 C -0.593 4.593 15 H 0.077 0.923 16 C -0.194 4.194 17 N -0.567 5.567 18 Si 0.785 3.215 19 H -0.192 1.192 20 H -0.206 1.206 21 H -0.193 1.193 22 C -0.131 4.131 23 C -0.167 4.167 24 C -0.182 4.182 25 C -0.196 4.196 26 H 0.060 0.940 27 H 0.079 0.921 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.263 0.737 36 H 0.161 0.839 37 H 0.161 0.839 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.021 0.979 41 H 0.020 0.980 42 H 0.074 0.926 43 H 0.136 0.864 44 H 0.098 0.902 45 H 0.102 0.898 46 H 0.109 0.891 47 H 0.076 0.924 48 H 0.079 0.921 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 20.012 -12.066 2.772 23.532 hybrid contribution -1.439 0.302 -0.105 1.474 sum 18.573 -11.764 2.667 22.147 Atomic orbital electron populations 1.21843 0.97218 1.01585 1.01220 1.21460 0.94600 0.96540 1.02673 1.21921 0.96362 0.97547 1.01973 1.21894 0.94370 0.94667 1.04490 1.20908 0.95393 0.94576 0.84380 0.89737 1.55426 1.70737 1.44719 1.15091 1.04406 0.76384 0.74057 0.73480 1.93530 1.87544 1.82679 1.34940 1.93544 1.69167 1.66412 1.67851 1.30663 1.20030 1.08613 1.14887 1.21289 0.97046 0.94453 1.01562 1.18909 0.90799 0.95620 0.94946 1.21712 0.99749 0.96101 1.41695 0.92301 1.25903 0.99520 0.99170 0.94764 1.70060 1.18474 1.25565 1.42651 0.85567 0.77713 0.79360 0.78853 1.19244 1.20575 1.19288 1.22936 0.93091 0.97322 0.99784 1.22878 0.97266 0.99521 0.97003 1.22843 0.97036 0.98639 0.99637 1.23135 0.98546 0.97390 1.00543 0.93979 0.92125 0.93674 0.91166 0.91052 0.92534 0.92219 0.89635 0.89007 0.73711 0.83868 0.83898 0.91928 0.91639 0.97873 0.98003 0.92650 0.86399 0.90212 0.89839 0.89138 0.92383 0.92105 0.90987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.37 9.91 71.98 0.71 -2.66 16 2 C -0.12 -1.86 5.93 30.60 0.18 -1.68 16 3 C -0.14 -2.38 4.26 30.60 0.13 -2.25 16 4 C -0.12 -1.40 4.87 30.60 0.15 -1.25 16 5 C 0.15 2.46 2.18 44.99 0.10 2.56 16 6 H 0.08 1.50 7.65 -2.38 -0.02 1.48 16 7 N -1.10 -20.74 3.58 -169.38 -0.61 -21.34 16 8 S 2.62 74.40 5.28 -56.49 -0.30 74.10 16 9 O -1.00 -34.68 18.08 -127.65 -2.31 -36.98 16 10 O -0.98 -32.81 15.55 -127.65 -1.99 -34.80 16 11 C -0.61 -18.50 4.88 71.98 0.35 -18.15 16 12 C -0.10 -4.28 5.16 30.59 0.16 -4.12 16 13 C 0.04 1.83 4.97 29.85 0.15 1.98 16 14 C -0.55 -31.71 9.11 25.60 0.23 -31.48 16 15 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 16 C 0.00 0.28 5.46 84.65 0.46 0.74 16 17 N -0.93 -55.61 13.29 21.45 0.28 -55.32 16 18 Si 0.96 44.31 29.54 68.60 2.03 46.34 16 19 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 22 C -0.11 -1.62 3.59 -10.27 -0.04 -1.65 16 23 C -0.13 -1.69 7.45 31.12 0.23 -1.46 16 24 C -0.14 -2.26 8.08 31.12 0.25 -2.00 16 25 C -0.16 -3.19 7.52 31.12 0.23 -2.96 16 26 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 28 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.06 1.09 7.43 -2.39 -0.02 1.07 16 32 H 0.06 1.08 6.01 -2.39 -0.01 1.07 16 33 H 0.09 0.82 8.14 -2.39 -0.02 0.81 16 34 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.42 6.35 7.30 -96.75 -0.71 5.65 16 36 H 0.14 3.83 7.11 -2.39 -0.02 3.81 16 37 H 0.14 3.90 7.07 -2.39 -0.02 3.89 16 38 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 39 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 40 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 41 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 42 H 0.26 14.93 8.31 -92.71 -0.77 14.15 16 43 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.08 1.08 6.06 -2.39 -0.01 1.07 16 45 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 49 H 0.07 1.85 5.36 -2.39 -0.01 1.84 16 Total: -1.00 -72.70 390.33 0.62 -72.08 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: 0.20 Total: 20.29 kcal Atomic # 6 Polarization: -67.67 SS G_CDS: 3.31 Total: -64.37 kcal Atomic # 7 Polarization: -76.34 SS G_CDS: -0.32 Total: -76.66 kcal Atomic # 8 Polarization: -67.49 SS G_CDS: -4.29 Total: -71.78 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Atomic # 16 Polarization: 74.40 SS G_CDS: -0.30 Total: 74.10 kcal Total: -72.70 0.62 -72.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152781966.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.705 kcal (2) G-P(sol) polarization free energy of solvation -72.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds