Wall clock time and date at job start Tue Mar 31 2020 11:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47048 * 2 1 4 4 C 1.53008 * 109.46598 * 119.99505 * 2 1 3 5 5 C 1.52997 * 109.46853 * 175.00211 * 4 2 1 6 6 N 1.46497 * 109.47179 * 180.02562 * 5 4 2 7 7 C 1.46502 * 120.00206 * 270.00632 * 6 5 4 8 8 C 1.50709 * 109.46680 * 269.99601 * 7 6 5 9 9 H 1.07991 * 119.99936 * 359.97438 * 8 7 6 10 10 C 1.37875 * 119.99601 * 179.97438 * 8 7 6 11 11 N 1.31513 * 119.99731 * 179.97438 * 10 8 7 12 12 Si 1.86802 * 120.00335 * 0.02562 * 10 8 7 13 13 H 1.48503 * 109.47065 * 89.99790 * 12 10 8 14 14 H 1.48493 * 109.47279 * 209.99711 * 12 10 8 15 15 H 1.48503 * 109.46950 * 330.00252 * 12 10 8 16 16 C 1.34783 * 120.00133 * 90.00021 * 6 5 4 17 17 O 1.21692 * 120.00196 * 180.02562 * 16 6 5 18 18 C 1.46435 * 119.99551 * 0.02562 * 16 6 5 19 19 C 1.34805 * 119.99625 * 179.97438 * 18 16 6 20 20 C 1.47218 * 120.00031 * 179.97438 * 19 18 16 21 21 C 1.39872 * 120.13813 * 0.02562 * 20 19 18 22 22 C 1.37905 * 119.93365 * 179.97438 * 21 20 19 23 23 C 1.38326 * 120.23144 * 359.97438 * 22 21 20 24 24 C 1.38857 * 120.29449 * 359.76166 * 23 22 21 25 25 O 1.35907 * 119.97601 * 180.28621 * 24 23 22 26 26 C 1.38426 * 120.05312 * 0.51488 * 24 23 22 27 27 H 1.08991 * 109.47783 * 300.00521 * 1 2 3 28 28 H 1.09000 * 109.46525 * 60.00317 * 1 2 3 29 29 H 1.09000 * 109.46984 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47783 * 239.99479 * 2 1 3 31 31 H 1.09008 * 109.46999 * 59.99318 * 3 2 1 32 32 H 1.08992 * 109.47387 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.46972 * 299.99774 * 3 2 1 34 34 H 1.09000 * 109.46778 * 55.00196 * 4 2 1 35 35 H 1.09005 * 109.47384 * 295.00540 * 4 2 1 36 36 H 1.09000 * 109.47441 * 60.00391 * 5 4 2 37 37 H 1.09005 * 109.47394 * 300.00323 * 5 4 2 38 38 H 1.08994 * 109.47019 * 29.99370 * 7 6 5 39 39 H 1.09003 * 109.47346 * 149.99990 * 7 6 5 40 40 H 0.97002 * 120.00403 * 180.02562 * 11 10 8 41 41 H 1.08000 * 120.00123 * 359.97438 * 18 16 6 42 42 H 1.08000 * 120.00252 * 359.97438 * 19 18 16 43 43 H 1.07997 * 120.03687 * 359.97438 * 21 20 19 44 44 H 1.08002 * 119.87741 * 179.97438 * 22 21 20 45 45 H 1.08001 * 119.85232 * 180.02562 * 23 22 21 46 46 H 0.96705 * 113.99532 * 270.22848 * 25 24 23 47 47 H 1.08002 * 120.11834 * 179.74766 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5647 -0.8310 1.1882 6 7 4.0529 -1.5220 2.3841 7 6 4.4011 -0.7548 3.5827 8 6 5.8552 -0.3629 3.5233 9 1 6.4594 -0.6564 2.6777 10 6 6.4139 0.3702 4.5486 11 7 7.6828 0.7118 4.4970 12 14 5.3689 0.8772 6.0116 13 1 5.4390 -0.1742 7.0580 14 1 5.8775 2.1588 6.5628 15 1 3.9594 1.0498 5.5770 16 6 4.1817 -2.8637 2.3819 17 8 4.5868 -3.4378 3.3755 18 6 3.8340 -3.6305 1.1838 19 6 3.9632 -4.9723 1.1813 20 6 3.6132 -5.7433 -0.0230 21 6 3.1468 -5.0865 -1.1664 22 6 2.8206 -5.8129 -2.2924 23 6 2.9535 -7.1897 -2.2957 24 6 3.4208 -7.8510 -1.1677 25 8 3.5544 -9.2035 -1.1800 26 6 3.7463 -7.1344 -0.0290 27 1 -0.3634 0.5139 0.8898 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8898 31 1 1.6765 1.9564 0.8900 32 1 3.1299 1.4426 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6052 -1.7197 1.2953 35 1 1.7514 -0.1582 2.1371 36 1 3.9994 0.1675 1.1423 37 1 3.8532 -1.3940 0.3005 38 1 3.7846 0.1427 3.6313 39 1 4.2252 -1.3651 4.4686 40 1 8.0761 1.2273 5.2185 41 1 3.4741 -3.1210 0.3021 42 1 4.3236 -5.4818 2.0628 43 1 3.0422 -4.0116 -1.1676 44 1 2.4602 -5.3048 -3.1746 45 1 2.6967 -7.7525 -3.1810 46 1 2.7630 -9.6794 -0.8930 47 1 4.1060 -7.6480 0.8503 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152901507.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:00 Heat of formation + Delta-G solvation = -49.939797 kcal Electronic energy + Delta-G solvation = -26048.261185 eV Core-core repulsion = 22389.175913 eV Total energy + Delta-G solvation = -3659.085272 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.97600 -39.22851 -37.18255 -36.84156 -34.64914 -33.69328 -32.52462 -30.70843 -29.61831 -29.08292 -27.56729 -27.11538 -24.46339 -23.29488 -22.86833 -22.30583 -20.43336 -19.93906 -18.43339 -17.92898 -17.08466 -16.88575 -16.44226 -15.94477 -15.41615 -15.26595 -15.01386 -14.43885 -14.26997 -13.98354 -13.83629 -13.57289 -13.48863 -13.12126 -12.79675 -12.63052 -12.44720 -12.32525 -12.21428 -12.00846 -11.85978 -11.64017 -11.46642 -11.22475 -10.94377 -10.86186 -10.75863 -10.59665 -10.52715 -10.41557 -10.27877 -10.11325 -9.53177 -9.10645 -9.00346 -8.58087 -8.34700 -7.68365 -6.07756 -4.06451 0.49115 1.04746 2.03045 3.29364 3.35314 3.37280 3.45308 3.75566 3.91311 4.00694 4.40154 4.56165 4.61175 4.81988 4.85826 4.93073 4.96059 5.00867 5.17233 5.18952 5.24513 5.31268 5.42329 5.57748 5.60359 5.64555 5.69719 5.71676 5.74516 5.85632 5.95523 5.98438 6.09336 6.11046 6.11732 6.15927 6.21580 6.36433 6.43695 6.47012 6.53960 6.59393 6.74928 6.96461 7.34878 7.37029 7.61738 8.24688 8.47642 8.92764 8.98554 9.52421 11.05654 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011193 B = 0.003459 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.871357 B = 8093.473456 C =10012.061982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 C -0.152 4.152 4 C -0.135 4.135 5 C 0.109 3.891 6 N -0.585 5.585 7 C 0.216 3.784 8 C -0.528 4.528 9 H 0.075 0.925 10 C 0.073 3.927 11 N -0.897 5.897 12 Si 0.875 3.125 13 H -0.274 1.274 14 H -0.285 1.285 15 H -0.266 1.266 16 C 0.536 3.464 17 O -0.542 6.542 18 C -0.180 4.180 19 C -0.054 4.054 20 C -0.041 4.041 21 C -0.116 4.116 22 C -0.103 4.103 23 C -0.145 4.145 24 C 0.102 3.898 25 O -0.499 6.499 26 C -0.128 4.128 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.030 0.970 39 H 0.036 0.964 40 H 0.264 0.736 41 H 0.128 0.872 42 H 0.136 0.864 43 H 0.131 0.869 44 H 0.129 0.871 45 H 0.127 0.873 46 H 0.390 0.610 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.201 -9.893 -15.063 24.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.209 4.209 4 C -0.174 4.174 5 C -0.015 4.015 6 N -0.314 5.314 7 C 0.096 3.904 8 C -0.566 4.566 9 H 0.093 0.907 10 C -0.130 4.130 11 N -0.536 5.536 12 Si 0.702 3.298 13 H -0.199 1.199 14 H -0.211 1.211 15 H -0.191 1.191 16 C 0.324 3.676 17 O -0.422 6.422 18 C -0.201 4.201 19 C -0.074 4.074 20 C -0.041 4.041 21 C -0.134 4.134 22 C -0.121 4.121 23 C -0.163 4.163 24 C 0.058 3.942 25 O -0.309 6.309 26 C -0.146 4.146 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.086 0.914 38 H 0.048 0.952 39 H 0.054 0.946 40 H 0.074 0.926 41 H 0.145 0.855 42 H 0.154 0.846 43 H 0.148 0.852 44 H 0.147 0.853 45 H 0.145 0.855 46 H 0.245 0.755 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -15.261 -9.922 -14.607 23.339 hybrid contribution -0.796 0.286 0.878 1.219 sum -16.057 -9.637 -13.729 23.221 Atomic orbital electron populations 1.21830 0.95470 1.01468 1.01549 1.21056 0.95458 0.96598 0.98100 1.21923 1.01832 0.95701 1.01491 1.22154 0.96311 1.00689 0.98235 1.21614 0.93072 0.99096 0.87709 1.47815 1.62884 1.05593 1.15145 1.19661 0.96744 0.90677 0.83340 1.21328 0.93536 1.34049 1.07714 0.90730 1.24850 0.94849 0.95458 0.97815 1.69897 1.11768 1.38658 1.33256 0.86865 0.80983 0.78332 0.83609 1.19906 1.21080 1.19057 1.18148 0.79047 0.82533 0.87837 1.90779 1.46381 1.69690 1.35304 1.23326 1.02860 0.94980 0.98888 1.22277 0.95103 0.93946 0.96068 1.18966 0.98623 0.92639 0.93864 1.21484 0.98969 1.00426 0.92501 1.20967 0.99473 0.93400 0.98284 1.21510 1.01077 0.95149 0.98595 1.18355 0.99459 0.83289 0.93116 1.84849 1.41549 1.14870 1.89682 1.21661 1.01149 0.93540 0.98255 0.92746 0.92944 0.92897 0.91287 0.92588 0.91864 0.93086 0.91977 0.91360 0.89445 0.91351 0.95208 0.94563 0.92575 0.85453 0.84578 0.85151 0.85311 0.85478 0.75473 0.84841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.19 37.16 0.34 -0.97 16 2 C -0.09 -0.94 2.92 -90.61 -0.26 -1.20 16 3 C -0.15 -1.60 8.95 37.16 0.33 -1.26 16 4 C -0.14 -1.71 5.01 -26.73 -0.13 -1.84 16 5 C 0.11 1.68 4.88 -4.05 -0.02 1.66 16 6 N -0.58 -12.00 2.46 -176.69 -0.43 -12.43 16 7 C 0.22 5.29 4.23 -5.19 -0.02 5.27 16 8 C -0.53 -15.22 9.94 -34.44 -0.34 -15.56 16 9 H 0.07 2.36 8.06 -52.49 -0.42 1.94 16 10 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 11 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 12 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 13 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.27 -6.16 6.54 56.52 0.37 -5.80 16 16 C 0.54 11.09 7.61 -12.96 -0.10 10.99 16 17 O -0.54 -13.53 15.81 5.20 0.08 -13.45 16 18 C -0.18 -2.76 8.61 -37.50 -0.32 -3.09 16 19 C -0.05 -0.77 9.46 -37.15 -0.35 -1.12 16 20 C -0.04 -0.49 5.87 -105.08 -0.62 -1.10 16 21 C -0.12 -1.19 9.41 -39.09 -0.37 -1.55 16 22 C -0.10 -0.90 10.02 -39.67 -0.40 -1.30 16 23 C -0.14 -1.30 9.98 -39.32 -0.39 -1.70 16 24 C 0.10 1.03 6.69 -39.28 -0.26 0.77 16 25 O -0.50 -4.44 13.50 -19.45 -0.26 -4.71 16 26 C -0.13 -1.42 9.73 -38.95 -0.38 -1.79 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 32 H 0.06 0.71 6.56 -51.93 -0.34 0.37 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.09 1.43 6.50 -51.93 -0.34 1.09 16 37 H 0.07 0.90 6.09 -51.93 -0.32 0.59 16 38 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 39 H 0.04 0.95 6.85 -51.93 -0.36 0.60 16 40 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 41 H 0.13 1.56 4.22 -52.49 -0.22 1.34 16 42 H 0.14 2.07 7.52 -52.49 -0.39 1.67 16 43 H 0.13 1.16 6.16 -52.49 -0.32 0.83 16 44 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 45 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 46 H 0.39 1.52 9.06 45.56 0.41 1.93 16 47 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 LS Contribution 387.67 15.07 5.84 5.84 Total: -1.00 -35.53 387.67 -8.55 -44.08 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -6.49 Total: 2.49 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -3.39 Total: -11.77 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.34 Total: -39.45 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -0.18 Total: -18.16 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.53 -8.55 -44.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152901507.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.862 kcal (2) G-P(sol) polarization free energy of solvation -35.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds