Wall clock time and date at job start Tue Mar 31 2020 11:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47048 * 2 1 4 4 C 1.53008 * 109.46598 * 119.99505 * 2 1 3 5 5 C 1.52997 * 109.46853 * 175.00211 * 4 2 1 6 6 N 1.46497 * 109.47179 * 180.02562 * 5 4 2 7 7 C 1.46502 * 120.00206 * 270.00632 * 6 5 4 8 8 C 1.50709 * 109.46680 * 269.99601 * 7 6 5 9 9 H 1.07991 * 119.99936 * 359.97438 * 8 7 6 10 10 C 1.37875 * 119.99601 * 179.97438 * 8 7 6 11 11 N 1.31513 * 119.99731 * 179.97438 * 10 8 7 12 12 Si 1.86802 * 120.00335 * 0.02562 * 10 8 7 13 13 H 1.48503 * 109.47065 * 89.99790 * 12 10 8 14 14 H 1.48493 * 109.47279 * 209.99711 * 12 10 8 15 15 H 1.48503 * 109.46950 * 330.00252 * 12 10 8 16 16 C 1.34783 * 120.00133 * 90.00021 * 6 5 4 17 17 O 1.21692 * 120.00196 * 180.02562 * 16 6 5 18 18 C 1.46435 * 119.99551 * 0.02562 * 16 6 5 19 19 C 1.34805 * 119.99625 * 179.97438 * 18 16 6 20 20 C 1.47218 * 120.00031 * 179.97438 * 19 18 16 21 21 C 1.39872 * 120.13813 * 0.02562 * 20 19 18 22 22 C 1.37905 * 119.93365 * 179.97438 * 21 20 19 23 23 C 1.38326 * 120.23144 * 359.97438 * 22 21 20 24 24 C 1.38857 * 120.29449 * 359.76166 * 23 22 21 25 25 O 1.35907 * 119.97601 * 180.28621 * 24 23 22 26 26 C 1.38426 * 120.05312 * 0.51488 * 24 23 22 27 27 H 1.08991 * 109.47783 * 300.00521 * 1 2 3 28 28 H 1.09000 * 109.46525 * 60.00317 * 1 2 3 29 29 H 1.09000 * 109.46984 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47783 * 239.99479 * 2 1 3 31 31 H 1.09008 * 109.46999 * 59.99318 * 3 2 1 32 32 H 1.08992 * 109.47387 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.46972 * 299.99774 * 3 2 1 34 34 H 1.09000 * 109.46778 * 55.00196 * 4 2 1 35 35 H 1.09005 * 109.47384 * 295.00540 * 4 2 1 36 36 H 1.09000 * 109.47441 * 60.00391 * 5 4 2 37 37 H 1.09005 * 109.47394 * 300.00323 * 5 4 2 38 38 H 1.08994 * 109.47019 * 29.99370 * 7 6 5 39 39 H 1.09003 * 109.47346 * 149.99990 * 7 6 5 40 40 H 0.97002 * 120.00403 * 180.02562 * 11 10 8 41 41 H 1.08000 * 120.00123 * 359.97438 * 18 16 6 42 42 H 1.08000 * 120.00252 * 359.97438 * 19 18 16 43 43 H 1.07997 * 120.03687 * 359.97438 * 21 20 19 44 44 H 1.08002 * 119.87741 * 179.97438 * 22 21 20 45 45 H 1.08001 * 119.85232 * 180.02562 * 23 22 21 46 46 H 0.96705 * 113.99532 * 270.22848 * 25 24 23 47 47 H 1.08002 * 120.11834 * 179.74766 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5647 -0.8310 1.1882 6 7 4.0529 -1.5220 2.3841 7 6 4.4011 -0.7548 3.5827 8 6 5.8552 -0.3629 3.5233 9 1 6.4594 -0.6564 2.6777 10 6 6.4139 0.3702 4.5486 11 7 7.6828 0.7118 4.4970 12 14 5.3689 0.8772 6.0116 13 1 5.4390 -0.1742 7.0580 14 1 5.8775 2.1588 6.5628 15 1 3.9594 1.0498 5.5770 16 6 4.1817 -2.8637 2.3819 17 8 4.5868 -3.4378 3.3755 18 6 3.8340 -3.6305 1.1838 19 6 3.9632 -4.9723 1.1813 20 6 3.6132 -5.7433 -0.0230 21 6 3.1468 -5.0865 -1.1664 22 6 2.8206 -5.8129 -2.2924 23 6 2.9535 -7.1897 -2.2957 24 6 3.4208 -7.8510 -1.1677 25 8 3.5544 -9.2035 -1.1800 26 6 3.7463 -7.1344 -0.0290 27 1 -0.3634 0.5139 0.8898 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8898 31 1 1.6765 1.9564 0.8900 32 1 3.1299 1.4426 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6052 -1.7197 1.2953 35 1 1.7514 -0.1582 2.1371 36 1 3.9994 0.1675 1.1423 37 1 3.8532 -1.3940 0.3005 38 1 3.7846 0.1427 3.6313 39 1 4.2252 -1.3651 4.4686 40 1 8.0761 1.2273 5.2185 41 1 3.4741 -3.1210 0.3021 42 1 4.3236 -5.4818 2.0628 43 1 3.0422 -4.0116 -1.1676 44 1 2.4602 -5.3048 -3.1746 45 1 2.6967 -7.7525 -3.1810 46 1 2.7630 -9.6794 -0.8930 47 1 4.1060 -7.6480 0.8503 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152901507.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:00 Heat of formation + Delta-G solvation = -73.027332 kcal Electronic energy + Delta-G solvation = -26049.262336 eV Core-core repulsion = 22389.175913 eV Total energy + Delta-G solvation = -3660.086423 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.00433 -40.50668 -38.08143 -37.84878 -36.14491 -34.84406 -34.53720 -31.69042 -30.96969 -30.08465 -29.09498 -27.91472 -25.83718 -24.56525 -23.90331 -23.48909 -21.60146 -20.80873 -19.69435 -19.10003 -18.92979 -18.26129 -17.32694 -17.27787 -16.51460 -16.35730 -16.08513 -15.82342 -15.60408 -15.26177 -14.80490 -14.71590 -14.64642 -14.41170 -14.22784 -13.71122 -13.64420 -13.54346 -13.36629 -13.14661 -12.96433 -12.83365 -12.67426 -12.50544 -12.34500 -12.17308 -12.04052 -11.80523 -11.61176 -11.52121 -11.47319 -11.38130 -11.27180 -10.84756 -10.76033 -9.75994 -9.49675 -9.17261 -8.35401 -6.40456 -0.48297 0.31957 0.98823 1.30387 1.34711 1.43057 2.23914 2.29271 2.38329 2.81411 2.98623 3.22777 3.54290 3.80583 3.92020 3.98463 4.05965 4.09476 4.20188 4.24623 4.27005 4.35932 4.49438 4.56027 4.69715 4.76432 4.84702 4.87487 4.88305 4.90286 4.92167 4.99958 5.07497 5.12413 5.19723 5.22009 5.26816 5.39966 5.43150 5.43829 5.45548 5.54591 5.59353 5.61686 5.65863 5.85144 6.22760 6.60580 6.67946 6.85241 7.19339 7.37626 8.81653 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011193 B = 0.003459 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.871357 B = 8093.473456 C =10012.061982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 C -0.154 4.154 4 C -0.125 4.125 5 C 0.104 3.896 6 N -0.592 5.592 7 C 0.227 3.773 8 C -0.536 4.536 9 H 0.028 0.972 10 C 0.012 3.988 11 N -0.944 5.944 12 Si 0.946 3.054 13 H -0.276 1.276 14 H -0.273 1.273 15 H -0.239 1.239 16 C 0.526 3.474 17 O -0.602 6.602 18 C -0.197 4.197 19 C -0.029 4.029 20 C -0.064 4.064 21 C -0.115 4.115 22 C -0.099 4.099 23 C -0.138 4.138 24 C 0.096 3.904 25 O -0.510 6.510 26 C -0.140 4.140 27 H 0.046 0.954 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.089 0.911 31 H 0.045 0.955 32 H 0.049 0.951 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.051 0.949 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.048 0.952 39 H 0.017 0.983 40 H 0.269 0.731 41 H 0.164 0.836 42 H 0.115 0.885 43 H 0.147 0.853 44 H 0.162 0.838 45 H 0.151 0.849 46 H 0.411 0.589 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.244 -10.251 -17.653 28.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 C -0.211 4.211 4 C -0.164 4.164 5 C -0.018 4.018 6 N -0.320 5.320 7 C 0.104 3.896 8 C -0.574 4.574 9 H 0.046 0.954 10 C -0.186 4.186 11 N -0.584 5.584 12 Si 0.769 3.231 13 H -0.202 1.202 14 H -0.198 1.198 15 H -0.162 1.162 16 C 0.317 3.683 17 O -0.486 6.486 18 C -0.217 4.217 19 C -0.049 4.049 20 C -0.065 4.065 21 C -0.133 4.133 22 C -0.117 4.117 23 C -0.156 4.156 24 C 0.051 3.949 25 O -0.324 6.324 26 C -0.158 4.158 27 H 0.065 0.935 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.113 0.887 38 H 0.066 0.934 39 H 0.035 0.965 40 H 0.078 0.922 41 H 0.181 0.819 42 H 0.133 0.867 43 H 0.164 0.836 44 H 0.179 0.821 45 H 0.169 0.831 46 H 0.270 0.730 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -18.349 -10.275 -17.248 27.198 hybrid contribution 0.214 0.204 1.537 1.565 sum -18.135 -10.071 -15.711 26.022 Atomic orbital electron populations 1.21805 0.94235 1.02103 1.01916 1.21042 0.96366 0.95907 0.97256 1.21942 1.00979 0.96333 1.01894 1.22061 0.93817 1.01357 0.99124 1.21915 0.95039 0.98270 0.86578 1.47899 1.62795 1.05834 1.15484 1.19295 0.94187 0.91296 0.84800 1.21543 0.95513 1.33967 1.06407 0.95359 1.25834 0.96204 0.95372 1.01175 1.70047 1.13905 1.39814 1.34676 0.85741 0.80427 0.78021 0.78944 1.20203 1.19773 1.16188 1.19021 0.77796 0.82643 0.88797 1.90732 1.49271 1.70765 1.37813 1.23071 1.05943 0.94821 0.97854 1.22349 0.92397 0.93799 0.96398 1.18854 1.01135 0.92808 0.93674 1.21727 0.98029 1.01396 0.92114 1.21340 0.98329 0.93311 0.98708 1.21864 0.99390 0.95616 0.98718 1.18461 0.99436 0.83830 0.93129 1.84797 1.43334 1.14468 1.89766 1.21765 1.01538 0.93555 0.98965 0.93506 0.91509 0.92141 0.89315 0.93553 0.93209 0.91370 0.91126 0.93000 0.90752 0.88696 0.93370 0.96502 0.92228 0.81906 0.86655 0.83578 0.82059 0.83130 0.73027 0.85203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.19 71.98 0.66 -1.45 16 2 C -0.09 -1.51 2.92 -10.79 -0.03 -1.54 16 3 C -0.15 -2.96 8.95 71.98 0.64 -2.31 16 4 C -0.12 -2.95 5.01 30.60 0.15 -2.80 16 5 C 0.10 3.15 4.88 86.38 0.42 3.57 16 6 N -0.59 -24.88 2.46 -831.15 -2.04 -26.92 16 7 C 0.23 11.40 4.23 85.64 0.36 11.76 16 8 C -0.54 -32.35 9.94 25.60 0.25 -32.09 16 9 H 0.03 1.91 8.06 -2.92 -0.02 1.88 16 10 C 0.01 0.73 5.47 84.65 0.46 1.20 16 11 N -0.94 -60.68 13.96 21.45 0.30 -60.38 16 12 Si 0.95 45.35 27.47 68.60 1.88 47.23 16 13 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 14 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 15 H -0.24 -10.30 6.54 99.48 0.65 -9.65 16 16 C 0.53 22.56 7.61 86.38 0.66 23.21 16 17 O -0.60 -31.87 15.81 -4.32 -0.07 -31.94 16 18 C -0.20 -5.99 8.61 23.62 0.20 -5.79 16 19 C -0.03 -0.84 9.46 23.84 0.23 -0.62 16 20 C -0.06 -1.45 5.87 -20.16 -0.12 -1.57 16 21 C -0.11 -1.98 9.41 22.59 0.21 -1.77 16 22 C -0.10 -1.31 10.02 22.21 0.22 -1.09 16 23 C -0.14 -1.96 9.98 22.44 0.22 -1.73 16 24 C 0.10 1.72 6.69 22.46 0.15 1.87 16 25 O -0.51 -8.00 13.50 -92.51 -1.25 -9.25 16 26 C -0.14 -2.97 9.73 22.68 0.22 -2.75 16 27 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 30 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.05 1.08 6.56 -2.39 -0.02 1.06 16 33 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 36 H 0.07 2.45 6.50 -2.39 -0.02 2.43 16 37 H 0.09 2.34 6.09 -2.38 -0.01 2.32 16 38 H 0.05 2.23 7.13 -2.39 -0.02 2.22 16 39 H 0.02 0.92 6.85 -2.39 -0.02 0.90 16 40 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 41 H 0.16 3.61 4.22 -2.91 -0.01 3.60 16 42 H 0.12 3.74 7.52 -2.91 -0.02 3.72 16 43 H 0.15 1.98 6.16 -2.91 -0.02 1.96 16 44 H 0.16 1.10 8.06 -2.91 -0.02 1.08 16 45 H 0.15 1.44 8.06 -2.91 -0.02 1.41 16 46 H 0.41 2.29 9.06 -74.05 -0.67 1.62 16 47 H 0.13 2.71 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -82.57 387.67 3.99 -78.57 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 0.24 Total: 16.58 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: 4.93 Total: -13.90 kcal Atomic # 7 Polarization: -85.55 SS G_CDS: -1.74 Total: -87.29 kcal Atomic # 8 Polarization: -39.88 SS G_CDS: -1.32 Total: -41.19 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.88 Total: 47.23 kcal Total: -82.57 3.99 -78.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152901507.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.547 kcal (2) G-P(sol) polarization free energy of solvation -82.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds