Wall clock time and date at job start Tue Mar 31 2020 12:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47086 * 2 1 4 4 C 1.53000 * 109.47086 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.49641 * 304.93269 * 4 3 2 6 6 C 1.53045 * 109.49606 * 184.83772 * 4 3 2 7 7 C 1.53039 * 109.53607 * 178.68215 * 6 4 3 8 8 C 1.52758 * 109.38380 * 61.24414 * 7 6 4 9 9 N 1.46934 * 109.00583 * 305.58516 * 8 7 6 10 10 C 1.34770 * 120.62725 * 233.58062 * 9 8 7 11 11 O 1.21592 * 119.99721 * 173.88020 * 10 9 8 12 12 C 1.47536 * 120.00509 * 353.88981 * 10 9 8 13 13 C 1.39670 * 120.19543 * 306.23795 * 12 10 9 14 14 C 1.37827 * 119.91807 * 180.27505 * 13 12 10 15 15 C 1.38573 * 120.32306 * 359.74919 * 14 13 12 16 16 C 1.38022 * 120.40486 * 359.96978 * 15 14 13 17 17 C 1.38835 * 120.07110 * 0.03068 * 16 15 14 18 18 O 1.35512 * 120.16402 * 179.97438 * 17 16 15 19 19 C 1.34821 * 116.99908 * 5.44742 * 18 17 16 20 20 H 1.07995 * 119.99640 * 354.94370 * 19 18 17 21 21 C 1.38695 * 119.99789 * 174.95358 * 19 18 17 22 22 N 1.31512 * 120.00641 * 359.72030 * 21 19 18 23 23 Si 1.86801 * 119.99655 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47214 * 179.72256 * 23 21 19 25 25 H 1.48502 * 109.47248 * 299.72454 * 23 21 19 26 26 H 1.48498 * 109.47241 * 59.72176 * 23 21 19 27 27 C 1.46923 * 118.73613 * 53.31018 * 9 8 7 28 28 H 1.09006 * 109.46726 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47593 * 300.00062 * 1 2 3 30 30 H 1.08997 * 109.47183 * 60.00343 * 1 2 3 31 31 H 1.09001 * 109.47398 * 240.00271 * 2 1 3 32 32 H 1.09002 * 109.47456 * 120.00068 * 2 1 3 33 33 H 1.09001 * 109.46781 * 59.99893 * 3 2 1 34 34 H 1.08997 * 109.46830 * 299.99874 * 3 2 1 35 35 H 1.08999 * 109.45796 * 298.70240 * 6 4 3 36 36 H 1.08998 * 109.45711 * 58.67917 * 6 4 3 37 37 H 1.09003 * 109.49627 * 181.31830 * 7 6 4 38 38 H 1.08996 * 109.50130 * 301.38319 * 7 6 4 39 39 H 1.08999 * 109.50944 * 185.70342 * 8 7 6 40 40 H 1.08999 * 109.43670 * 65.41796 * 8 7 6 41 41 H 1.08002 * 120.03866 * 0.02566 * 13 12 10 42 42 H 1.08006 * 119.83426 * 179.76690 * 14 13 12 43 43 H 1.07998 * 119.79720 * 180.02562 * 15 14 13 44 44 H 1.07996 * 119.96594 * 179.97438 * 16 15 14 45 45 H 0.97007 * 120.00184 * 0.27608 * 22 21 19 46 46 H 1.08999 * 109.58481 * 66.43408 * 27 9 8 47 47 H 1.09006 * 109.58524 * 186.85404 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9334 0.8543 0.8432 6 6 4.0807 2.8801 0.1223 7 6 5.6107 2.8785 0.1561 8 6 6.1460 2.2835 -1.1450 9 7 5.5452 0.9580 -1.3478 10 6 6.3218 -0.1226 -1.5608 11 8 5.8215 -1.2294 -1.6163 12 6 7.7791 0.0373 -1.7267 13 6 8.2845 0.9217 -2.6823 14 6 9.6469 1.0624 -2.8363 15 6 10.5195 0.3342 -2.0435 16 6 10.0346 -0.5392 -1.0910 17 6 8.6653 -0.6938 -0.9219 18 8 8.1871 -1.5512 0.0124 19 6 9.0902 -2.1399 0.8220 20 1 10.1460 -1.9838 0.6571 21 6 8.6631 -2.9462 1.8667 22 7 7.3773 -3.1320 2.0708 23 14 9.9144 -3.7625 2.9880 24 1 9.2067 -4.5600 4.0217 25 1 10.7890 -4.6557 2.1865 26 1 10.7421 -2.7208 3.6474 27 6 4.0819 0.8321 -1.3078 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.7370 3.4612 -0.7334 36 1 3.6979 3.3249 1.0408 37 1 5.9733 3.9006 0.2663 38 1 5.9555 2.2776 0.9975 39 1 7.2300 2.1876 -1.0826 40 1 5.8820 2.9355 -1.9776 41 1 7.6085 1.4915 -3.3027 42 1 10.0362 1.7438 -3.5783 43 1 11.5855 0.4514 -2.1710 44 1 10.7210 -1.1034 -0.4773 45 1 6.7275 -2.7084 1.4883 46 1 3.6462 1.3634 -2.1540 47 1 3.8043 -0.2210 -1.3529 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155134303.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:46 Heat of formation + Delta-G solvation = -63.338834 kcal Electronic energy + Delta-G solvation = -27472.243609 eV Core-core repulsion = 23812.577311 eV Total energy + Delta-G solvation = -3659.666298 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.16067 -38.89282 -37.30662 -36.49414 -35.08729 -32.48660 -32.35070 -31.17516 -30.29248 -28.99750 -26.35576 -25.49735 -24.97536 -22.83738 -22.62511 -21.58067 -20.86064 -20.20327 -19.01503 -18.44626 -17.17551 -16.36923 -15.91143 -15.34523 -15.09893 -14.55330 -14.35367 -14.31808 -14.13458 -13.96983 -13.73558 -13.71595 -13.68999 -13.10513 -12.98812 -12.91707 -12.50868 -12.32794 -12.04953 -11.70178 -11.44202 -11.31117 -11.24082 -10.98349 -10.96783 -10.85760 -10.79774 -10.55919 -10.55728 -10.42370 -10.31665 -10.11405 -9.62905 -9.12102 -8.83842 -8.32546 -8.23267 -7.42114 -6.82310 -4.11188 1.74703 2.21807 3.21179 3.26311 3.27448 3.43062 3.50937 4.06736 4.43253 4.59403 4.78290 4.86665 4.94975 5.04758 5.08775 5.12657 5.16996 5.20536 5.29438 5.42548 5.46334 5.55783 5.59808 5.63569 5.65868 5.74897 5.79667 5.81538 5.89537 5.92084 5.93338 6.06529 6.07508 6.10439 6.14252 6.20843 6.28748 6.36187 6.46559 6.49289 6.57761 6.87259 6.93878 7.01911 7.17709 7.43633 7.57106 7.85390 8.33710 8.80329 8.85617 9.52802 10.61257 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010454 B = 0.004753 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.812354 B = 5889.831500 C = 7666.415305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.131 4.131 3 C -0.108 4.108 4 C -0.105 4.105 5 H 0.077 0.923 6 C -0.110 4.110 7 C -0.137 4.137 8 C 0.109 3.891 9 N -0.615 5.615 10 C 0.579 3.421 11 O -0.528 6.528 12 C -0.218 4.218 13 C -0.042 4.042 14 C -0.222 4.222 15 C -0.055 4.055 16 C -0.231 4.231 17 C 0.190 3.810 18 O -0.174 6.174 19 C -0.478 4.478 20 H 0.086 0.914 21 C 0.014 3.986 22 N -0.867 5.867 23 Si 1.096 2.904 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.119 3.881 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.093 0.907 40 H 0.061 0.939 41 H 0.115 0.885 42 H 0.111 0.889 43 H 0.112 0.888 44 H 0.133 0.867 45 H 0.288 0.712 46 H 0.059 0.941 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.393 13.259 -4.820 15.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.169 4.169 3 C -0.146 4.146 4 C -0.125 4.125 5 H 0.095 0.905 6 C -0.148 4.148 7 C -0.176 4.176 8 C -0.014 4.014 9 N -0.350 5.350 10 C 0.369 3.631 11 O -0.404 6.404 12 C -0.223 4.223 13 C -0.060 4.060 14 C -0.241 4.241 15 C -0.074 4.074 16 C -0.250 4.250 17 C 0.133 3.867 18 O -0.075 6.075 19 C -0.553 4.553 20 H 0.104 0.896 21 C -0.194 4.194 22 N -0.497 5.497 23 Si 0.919 3.081 24 H -0.197 1.197 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.003 4.003 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.111 0.889 40 H 0.079 0.921 41 H 0.133 0.867 42 H 0.129 0.871 43 H 0.130 0.870 44 H 0.150 0.850 45 H 0.098 0.902 46 H 0.077 0.923 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.787 11.507 -3.416 13.325 hybrid contribution 0.086 1.155 -1.401 1.818 sum -5.701 12.662 -4.816 14.698 Atomic orbital electron populations 1.21760 0.96117 1.01510 1.01357 1.21617 0.95504 0.96922 1.02850 1.21578 0.94201 0.96968 1.01832 1.21578 0.95159 0.96779 0.98963 0.90452 1.21544 0.95396 0.96186 1.01683 1.21861 0.95944 1.01088 0.98673 1.21656 0.99612 0.83439 0.96693 1.47975 1.06084 1.08047 1.72875 1.18239 0.86364 0.83402 0.75084 1.90754 1.74984 1.24696 1.49958 1.18725 0.91537 1.06330 1.05680 1.20699 0.95324 0.94722 0.95292 1.20496 0.92904 1.06044 1.04675 1.20902 0.98718 0.94098 0.93680 1.21147 0.94904 1.05083 1.03881 1.19043 0.91173 0.87525 0.88940 1.83702 1.36767 1.47975 1.39036 1.22316 0.89451 1.31657 1.11864 0.89611 1.26609 1.00757 0.95655 0.96354 1.70500 1.01216 1.39500 1.38472 0.83119 0.73142 0.76309 0.75491 1.19680 1.20579 1.20635 1.21584 0.79778 1.02737 0.96225 0.92839 0.92995 0.92997 0.91571 0.91709 0.91880 0.92047 0.92033 0.91932 0.90927 0.91258 0.88911 0.92116 0.86721 0.87052 0.87027 0.84954 0.90174 0.92268 0.88961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.91 37.16 0.37 -1.10 16 2 C -0.13 -1.54 5.69 -26.73 -0.15 -1.69 16 3 C -0.11 -1.16 4.69 -26.73 -0.13 -1.29 16 4 C -0.11 -1.38 2.34 -90.50 -0.21 -1.59 16 5 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 6 C -0.11 -1.24 5.17 -26.69 -0.14 -1.37 16 7 C -0.14 -1.72 6.06 -26.83 -0.16 -1.88 16 8 C 0.11 1.52 5.54 -3.93 -0.02 1.50 16 9 N -0.62 -10.70 2.98 -174.26 -0.52 -11.22 16 10 C 0.58 12.88 6.82 -12.47 -0.09 12.79 16 11 O -0.53 -13.96 16.17 2.06 0.03 -13.93 16 12 C -0.22 -4.74 4.61 -104.81 -0.48 -5.23 16 13 C -0.04 -0.73 7.79 -39.20 -0.31 -1.03 16 14 C -0.22 -3.63 10.02 -39.61 -0.40 -4.02 16 15 C -0.06 -0.98 10.03 -39.54 -0.40 -1.37 16 16 C -0.23 -4.99 9.16 -39.44 -0.36 -5.35 16 17 C 0.19 4.70 6.65 -38.60 -0.26 4.45 16 18 O -0.17 -5.05 8.36 -2.42 -0.02 -5.07 16 19 C -0.48 -13.56 9.49 30.90 0.29 -13.27 16 20 H 0.09 2.25 5.20 -52.49 -0.27 1.97 16 21 C 0.01 0.39 5.49 -17.52 -0.10 0.30 16 22 N -0.87 -26.53 13.69 55.48 0.76 -25.77 16 23 Si 1.10 23.73 29.92 -169.99 -5.09 18.64 16 24 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 25 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 26 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 27 C 0.12 1.81 5.33 -3.71 -0.02 1.79 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.84 6.70 -51.93 -0.35 0.49 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.09 1.41 5.40 -51.93 -0.28 1.13 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.11 1.68 7.76 -52.49 -0.41 1.28 16 42 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 43 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 44 H 0.13 2.86 5.64 -52.49 -0.30 2.56 16 45 H 0.29 9.28 7.97 -40.82 -0.33 8.96 16 46 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 47 H 0.09 1.62 5.71 -51.93 -0.30 1.32 16 LS Contribution 373.59 15.07 5.63 5.63 Total: -1.00 -33.34 373.59 -9.12 -42.46 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -7.36 Total: 7.63 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: -2.55 Total: -18.37 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.24 Total: -36.99 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: 0.01 Total: -19.00 kcal Atomic # 14 Polarization: 23.73 SS G_CDS: -5.09 Total: 18.64 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.34 -9.12 -42.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155134303.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.882 kcal (2) G-P(sol) polarization free energy of solvation -33.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds