Wall clock time and date at job start Tue Mar 31 2020 12:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47086 * 2 1 4 4 C 1.53000 * 109.47086 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.49641 * 304.93269 * 4 3 2 6 6 C 1.53045 * 109.49606 * 184.83772 * 4 3 2 7 7 C 1.53039 * 109.53607 * 178.68215 * 6 4 3 8 8 C 1.52758 * 109.38380 * 61.24414 * 7 6 4 9 9 N 1.46934 * 109.00583 * 305.58516 * 8 7 6 10 10 C 1.34770 * 120.62725 * 233.58062 * 9 8 7 11 11 O 1.21592 * 119.99721 * 173.88020 * 10 9 8 12 12 C 1.47536 * 120.00509 * 353.88981 * 10 9 8 13 13 C 1.39670 * 120.19543 * 306.23795 * 12 10 9 14 14 C 1.37827 * 119.91807 * 180.27505 * 13 12 10 15 15 C 1.38573 * 120.32306 * 359.74919 * 14 13 12 16 16 C 1.38022 * 120.40486 * 359.96978 * 15 14 13 17 17 C 1.38835 * 120.07110 * 0.03068 * 16 15 14 18 18 O 1.35512 * 120.16402 * 179.97438 * 17 16 15 19 19 C 1.34821 * 116.99908 * 5.44742 * 18 17 16 20 20 H 1.07995 * 119.99640 * 354.94370 * 19 18 17 21 21 C 1.38695 * 119.99789 * 174.95358 * 19 18 17 22 22 N 1.31512 * 120.00641 * 359.72030 * 21 19 18 23 23 Si 1.86801 * 119.99655 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47214 * 179.72256 * 23 21 19 25 25 H 1.48502 * 109.47248 * 299.72454 * 23 21 19 26 26 H 1.48498 * 109.47241 * 59.72176 * 23 21 19 27 27 C 1.46923 * 118.73613 * 53.31018 * 9 8 7 28 28 H 1.09006 * 109.46726 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47593 * 300.00062 * 1 2 3 30 30 H 1.08997 * 109.47183 * 60.00343 * 1 2 3 31 31 H 1.09001 * 109.47398 * 240.00271 * 2 1 3 32 32 H 1.09002 * 109.47456 * 120.00068 * 2 1 3 33 33 H 1.09001 * 109.46781 * 59.99893 * 3 2 1 34 34 H 1.08997 * 109.46830 * 299.99874 * 3 2 1 35 35 H 1.08999 * 109.45796 * 298.70240 * 6 4 3 36 36 H 1.08998 * 109.45711 * 58.67917 * 6 4 3 37 37 H 1.09003 * 109.49627 * 181.31830 * 7 6 4 38 38 H 1.08996 * 109.50130 * 301.38319 * 7 6 4 39 39 H 1.08999 * 109.50944 * 185.70342 * 8 7 6 40 40 H 1.08999 * 109.43670 * 65.41796 * 8 7 6 41 41 H 1.08002 * 120.03866 * 0.02566 * 13 12 10 42 42 H 1.08006 * 119.83426 * 179.76690 * 14 13 12 43 43 H 1.07998 * 119.79720 * 180.02562 * 15 14 13 44 44 H 1.07996 * 119.96594 * 179.97438 * 16 15 14 45 45 H 0.97007 * 120.00184 * 0.27608 * 22 21 19 46 46 H 1.08999 * 109.58481 * 66.43408 * 27 9 8 47 47 H 1.09006 * 109.58524 * 186.85404 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9334 0.8543 0.8432 6 6 4.0807 2.8801 0.1223 7 6 5.6107 2.8785 0.1561 8 6 6.1460 2.2835 -1.1450 9 7 5.5452 0.9580 -1.3478 10 6 6.3218 -0.1226 -1.5608 11 8 5.8215 -1.2294 -1.6163 12 6 7.7791 0.0373 -1.7267 13 6 8.2845 0.9217 -2.6823 14 6 9.6469 1.0624 -2.8363 15 6 10.5195 0.3342 -2.0435 16 6 10.0346 -0.5392 -1.0910 17 6 8.6653 -0.6938 -0.9219 18 8 8.1871 -1.5512 0.0124 19 6 9.0902 -2.1399 0.8220 20 1 10.1460 -1.9838 0.6571 21 6 8.6631 -2.9462 1.8667 22 7 7.3773 -3.1320 2.0708 23 14 9.9144 -3.7625 2.9880 24 1 9.2067 -4.5600 4.0217 25 1 10.7890 -4.6557 2.1865 26 1 10.7421 -2.7208 3.6474 27 6 4.0819 0.8321 -1.3078 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.7370 3.4612 -0.7334 36 1 3.6979 3.3249 1.0408 37 1 5.9733 3.9006 0.2663 38 1 5.9555 2.2776 0.9975 39 1 7.2300 2.1876 -1.0826 40 1 5.8820 2.9355 -1.9776 41 1 7.6085 1.4915 -3.3027 42 1 10.0362 1.7438 -3.5783 43 1 11.5855 0.4514 -2.1710 44 1 10.7210 -1.1034 -0.4773 45 1 6.7275 -2.7084 1.4883 46 1 3.6462 1.3634 -2.1540 47 1 3.8043 -0.2210 -1.3529 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155134303.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:45 Heat of formation + Delta-G solvation = -84.019586 kcal Electronic energy + Delta-G solvation = -27473.140393 eV Core-core repulsion = 23812.577311 eV Total energy + Delta-G solvation = -3660.563083 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.72049 -40.48488 -38.81210 -38.20719 -36.24135 -34.39028 -33.74138 -32.44986 -31.63571 -30.66688 -27.45059 -27.01094 -26.74179 -24.18254 -23.86533 -23.28711 -21.89976 -21.41287 -20.45344 -20.29860 -18.77982 -18.04042 -17.36076 -17.06146 -16.38228 -16.10828 -15.76844 -15.64327 -15.51611 -15.41064 -15.26675 -15.14143 -15.02867 -14.58000 -14.43406 -14.01868 -13.91511 -13.39028 -13.15782 -13.08047 -12.96911 -12.60545 -12.53315 -12.44700 -12.37916 -12.22024 -12.01039 -11.97609 -11.90418 -11.59615 -11.53261 -11.48288 -11.14068 -10.83320 -10.82846 -9.88775 -9.64901 -9.17651 -9.01225 -6.31537 0.15418 0.60820 1.43303 1.57619 1.63347 1.74318 2.06233 2.31391 2.77262 3.07094 3.21405 3.50435 3.67073 3.79765 3.87404 4.01571 4.03177 4.15334 4.16795 4.18802 4.25312 4.31520 4.45951 4.52570 4.55473 4.56721 4.72225 4.74559 4.80020 4.81077 4.84929 4.88694 4.94907 5.01577 5.07035 5.10245 5.14283 5.19971 5.22134 5.32041 5.39452 5.43277 5.46779 5.53169 5.60736 5.63900 5.96025 6.17149 6.33618 6.80054 7.16213 7.56611 8.41555 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010454 B = 0.004753 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.812354 B = 5889.831500 C = 7666.415305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.136 4.136 3 C -0.097 4.097 4 C -0.102 4.102 5 H 0.029 0.971 6 C -0.103 4.103 7 C -0.136 4.136 8 C 0.102 3.898 9 N -0.607 5.607 10 C 0.565 3.435 11 O -0.592 6.592 12 C -0.229 4.229 13 C -0.035 4.035 14 C -0.186 4.186 15 C -0.046 4.046 16 C -0.248 4.248 17 C 0.147 3.853 18 O -0.236 6.236 19 C -0.493 4.493 20 H 0.099 0.901 21 C -0.046 4.046 22 N -0.911 5.911 23 Si 1.147 2.853 24 H -0.275 1.275 25 H -0.258 1.258 26 H -0.253 1.253 27 C 0.115 3.885 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.048 0.952 32 H 0.036 0.964 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.109 0.891 38 H 0.027 0.973 39 H 0.079 0.921 40 H 0.107 0.893 41 H 0.154 0.846 42 H 0.168 0.832 43 H 0.157 0.843 44 H 0.123 0.877 45 H 0.255 0.745 46 H 0.097 0.903 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.029 18.098 -7.430 19.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.174 4.174 3 C -0.135 4.135 4 C -0.122 4.122 5 H 0.048 0.952 6 C -0.140 4.140 7 C -0.174 4.174 8 C -0.019 4.019 9 N -0.339 5.339 10 C 0.355 3.645 11 O -0.473 6.473 12 C -0.233 4.233 13 C -0.053 4.053 14 C -0.204 4.204 15 C -0.064 4.064 16 C -0.267 4.267 17 C 0.095 3.905 18 O -0.142 6.142 19 C -0.568 4.568 20 H 0.116 0.884 21 C -0.242 4.242 22 N -0.545 5.545 23 Si 0.962 3.038 24 H -0.200 1.200 25 H -0.182 1.182 26 H -0.177 1.177 27 C -0.007 4.007 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.096 0.904 37 H 0.127 0.873 38 H 0.046 0.954 39 H 0.098 0.902 40 H 0.125 0.875 41 H 0.172 0.828 42 H 0.186 0.814 43 H 0.175 0.825 44 H 0.140 0.860 45 H 0.063 0.937 46 H 0.115 0.885 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.397 16.460 -6.078 18.089 hybrid contribution -0.259 -0.016 -0.945 0.980 sum -4.657 16.444 -7.023 18.477 Atomic orbital electron populations 1.21719 0.94006 1.01762 1.02678 1.21631 0.97365 0.97670 1.00700 1.21535 0.91985 0.96201 1.03792 1.21538 0.97040 0.97721 0.95856 0.95186 1.21545 0.94094 0.94473 1.03929 1.21882 0.97186 1.02073 0.96270 1.22004 0.98839 0.81942 0.99163 1.48106 1.06857 1.08353 1.70579 1.18617 0.87237 0.83682 0.74961 1.90715 1.76080 1.27317 1.53189 1.19137 0.91162 1.06831 1.06176 1.21192 0.97007 0.93342 0.93773 1.21207 0.91838 1.04078 1.03284 1.21432 1.01450 0.91916 0.91584 1.21307 0.93386 1.06540 1.05467 1.19804 0.93405 0.88200 0.89124 1.83713 1.37724 1.51250 1.41509 1.22723 0.90169 1.31725 1.12188 0.88389 1.28592 1.01626 0.95995 0.97993 1.70667 1.02074 1.42481 1.39270 0.82603 0.71184 0.76276 0.73764 1.20012 1.18202 1.17744 1.21776 0.78693 1.01397 0.98826 0.93263 0.91893 0.91302 0.93346 0.94539 0.90349 0.89315 0.88696 0.90427 0.87320 0.95390 0.90246 0.87518 0.82821 0.81430 0.82531 0.85960 0.93717 0.88497 0.92752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.91 71.98 0.71 -2.04 16 2 C -0.14 -3.39 5.69 30.60 0.17 -3.21 16 3 C -0.10 -1.99 4.69 30.60 0.14 -1.85 16 4 C -0.10 -2.72 2.34 -10.72 -0.03 -2.74 16 5 H 0.03 1.06 8.14 -2.39 -0.02 1.05 16 6 C -0.10 -2.02 5.17 30.62 0.16 -1.86 16 7 C -0.14 -3.16 6.06 30.53 0.19 -2.97 16 8 C 0.10 2.60 5.54 86.22 0.48 3.08 16 9 N -0.61 -21.46 2.98 -823.49 -2.45 -23.92 16 10 C 0.56 26.67 6.82 86.70 0.59 27.26 16 11 O -0.59 -34.58 16.17 -0.92 -0.01 -34.60 16 12 C -0.23 -10.14 4.61 -19.98 -0.09 -10.23 16 13 C -0.03 -1.09 7.79 22.52 0.18 -0.92 16 14 C -0.19 -4.96 10.02 22.25 0.22 -4.74 16 15 C -0.05 -1.42 10.03 22.30 0.22 -1.20 16 16 C -0.25 -10.73 9.16 22.36 0.20 -10.52 16 17 C 0.15 7.66 6.65 22.91 0.15 7.81 16 18 O -0.24 -15.10 8.36 -16.96 -0.14 -15.24 16 19 C -0.49 -30.23 9.49 67.93 0.64 -29.59 16 20 H 0.10 5.46 5.20 -2.91 -0.02 5.44 16 21 C -0.05 -2.77 5.49 84.85 0.47 -2.31 16 22 N -0.91 -61.48 13.69 21.62 0.30 -61.18 16 23 Si 1.15 50.05 29.92 68.60 2.05 52.10 16 24 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 25 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 26 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 27 C 0.11 3.57 5.33 86.36 0.46 4.03 16 28 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 29 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.05 1.35 6.70 -2.39 -0.02 1.34 16 32 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.08 2.25 5.40 -2.39 -0.01 2.23 16 40 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.15 3.65 7.76 -2.91 -0.02 3.63 16 42 H 0.17 2.84 8.06 -2.91 -0.02 2.82 16 43 H 0.16 3.53 8.06 -2.91 -0.02 3.50 16 44 H 0.12 5.43 5.64 -2.91 -0.02 5.41 16 45 H 0.25 18.58 7.97 -92.70 -0.74 17.84 16 46 H 0.10 2.28 8.14 -2.39 -0.02 2.27 16 47 H 0.05 2.11 5.71 -2.38 -0.01 2.10 16 Total: -1.00 -88.68 373.59 5.60 -83.08 By element: Atomic # 1 Polarization: 30.78 SS G_CDS: 0.99 Total: 31.77 kcal Atomic # 6 Polarization: -36.89 SS G_CDS: 4.88 Total: -32.01 kcal Atomic # 7 Polarization: -82.94 SS G_CDS: -2.16 Total: -85.10 kcal Atomic # 8 Polarization: -49.68 SS G_CDS: -0.16 Total: -49.84 kcal Atomic # 14 Polarization: 50.05 SS G_CDS: 2.05 Total: 52.10 kcal Total: -88.68 5.60 -83.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155134303.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.939 kcal (2) G-P(sol) polarization free energy of solvation -88.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds