Wall clock time and date at job start Tue Mar 31 2020 12:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46872 * 2 1 4 4 C 1.53002 * 109.46872 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.49702 * 55.06694 * 4 3 2 6 6 C 1.53039 * 109.52513 * 175.15041 * 4 3 2 7 7 C 1.53031 * 109.53887 * 181.33173 * 6 4 3 8 8 C 1.53620 * 109.24480 * 298.50887 * 7 6 4 9 9 N 1.46923 * 108.54206 * 54.85966 * 8 7 6 10 10 C 1.34782 * 120.63551 * 126.37015 * 9 8 7 11 11 O 1.21595 * 119.99965 * 175.84010 * 10 9 8 12 12 C 1.47531 * 119.99651 * 355.84183 * 10 9 8 13 13 C 1.39673 * 120.19683 * 53.70555 * 12 10 9 14 14 C 1.37833 * 119.91425 * 180.29512 * 13 12 10 15 15 C 1.38575 * 120.32491 * 359.72417 * 14 13 12 16 16 C 1.38020 * 120.40293 * 359.97438 * 15 14 13 17 17 C 1.38842 * 120.07122 * 0.02562 * 16 15 14 18 18 O 1.35515 * 120.15955 * 180.02562 * 17 16 15 19 19 C 1.34819 * 117.00394 * 5.92179 * 18 17 16 20 20 H 1.08009 * 119.99725 * 354.86431 * 19 18 17 21 21 C 1.38690 * 120.00193 * 174.86711 * 19 18 17 22 22 N 1.31522 * 120.00013 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 120.00293 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47248 * 270.00620 * 23 21 19 25 25 H 1.48501 * 109.47070 * 150.00262 * 23 21 19 26 26 H 1.48502 * 109.46736 * 30.00156 * 23 21 19 27 27 C 1.46933 * 118.73707 * 306.09114 * 9 8 7 28 28 H 1.08999 * 109.46977 * 299.99579 * 1 2 3 29 29 H 1.09011 * 109.47014 * 59.99713 * 1 2 3 30 30 H 1.08997 * 109.46927 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46977 * 240.00421 * 2 1 3 32 32 H 1.08994 * 109.47179 * 120.00143 * 2 1 3 33 33 H 1.08999 * 109.46975 * 60.00420 * 3 2 1 34 34 H 1.08994 * 109.47335 * 300.00047 * 3 2 1 35 35 H 1.09000 * 109.45958 * 301.35254 * 6 4 3 36 36 H 1.09002 * 109.45642 * 61.32291 * 6 4 3 37 37 H 1.09004 * 109.49824 * 58.58758 * 7 6 4 38 38 H 1.09004 * 109.49791 * 178.64678 * 7 6 4 39 39 H 1.08993 * 109.74216 * 295.11844 * 8 7 6 40 40 H 1.09003 * 109.66535 * 174.54724 * 8 7 6 41 41 H 1.07994 * 120.04242 * 0.02562 * 13 12 10 42 42 H 1.07999 * 119.83326 * 179.70302 * 14 13 12 43 43 H 1.07998 * 119.79681 * 180.02562 * 15 14 13 44 44 H 1.07993 * 119.96495 * 180.02562 * 16 15 14 45 45 H 0.96998 * 120.00247 * 179.97438 * 22 21 19 46 46 H 1.08996 * 109.58934 * 173.64840 * 27 9 8 47 47 H 1.08997 * 109.58877 * 293.93598 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9341 0.8541 -0.8415 6 6 4.0815 2.8798 -0.1213 7 6 5.6115 2.8774 -0.1541 8 6 6.1452 2.2845 1.1587 9 7 5.5441 0.9576 1.3505 10 6 6.3201 -0.1233 1.5654 11 8 5.8092 -1.2019 1.7977 12 6 7.7893 0.0024 1.5187 13 6 8.4379 0.9580 2.3042 14 6 9.8103 1.0744 2.2515 15 6 10.5518 0.2438 1.4266 16 6 9.9251 -0.7092 0.6494 17 6 8.5435 -0.8409 0.6896 18 8 7.9263 -1.7763 -0.0723 19 6 8.7169 -2.6290 -0.7546 20 1 9.7887 -2.4965 -0.7453 21 6 8.1538 -3.6764 -1.4684 22 7 8.9251 -4.5086 -2.1335 23 14 6.3000 -3.9061 -1.4839 24 1 5.9009 -4.7871 -0.3570 25 1 5.8890 -4.5282 -2.7682 26 1 5.6364 -2.5856 -1.3388 27 6 4.0807 0.8324 1.3097 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9564 -0.8899 35 1 3.6993 3.3245 -1.0401 36 1 3.7377 3.4614 0.7341 37 1 5.9565 2.2755 -0.9948 38 1 5.9746 3.8992 -0.2651 39 1 5.8742 2.9323 1.9923 40 1 7.2297 2.1899 1.1044 41 1 7.8646 1.6076 2.9488 42 1 10.3101 1.8170 2.8558 43 1 11.6268 0.3422 1.3922 44 1 10.5099 -1.3530 0.0094 45 1 8.5313 -5.2413 -2.6324 46 1 3.8027 -0.2206 1.3550 47 1 3.6449 1.3621 2.1567 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155134398.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:50 Heat of formation + Delta-G solvation = -53.449698 kcal Electronic energy + Delta-G solvation = -27580.020456 eV Core-core repulsion = 23920.782983 eV Total energy + Delta-G solvation = -3659.237473 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.25576 -38.95896 -37.37673 -36.56980 -35.14238 -32.55341 -32.47057 -31.25260 -30.31830 -29.26958 -26.43368 -25.65234 -25.22969 -22.96276 -22.71099 -21.43361 -20.92789 -20.27607 -19.13927 -17.99859 -17.33931 -16.59541 -16.00319 -15.32295 -15.04672 -14.73637 -14.43412 -14.39279 -14.20195 -13.92759 -13.84866 -13.74118 -13.60112 -13.12112 -12.99010 -12.58555 -12.51167 -12.29988 -12.24544 -12.11593 -11.78418 -11.37026 -11.30686 -11.24126 -11.03785 -10.99504 -10.80711 -10.76322 -10.62593 -10.47868 -10.22437 -10.18021 -9.62877 -9.18120 -8.91733 -8.37718 -8.28180 -7.50914 -6.48354 -4.14597 1.68840 2.14411 3.19251 3.24556 3.33353 3.42952 3.49673 4.26178 4.35713 4.52604 4.68960 4.73593 4.80027 4.97695 5.01176 5.05818 5.10864 5.12808 5.22507 5.36009 5.40382 5.50172 5.53921 5.57289 5.62850 5.69176 5.73801 5.75309 5.83315 5.86768 5.87479 5.99631 6.01217 6.06549 6.07181 6.14089 6.21694 6.29377 6.35935 6.41797 6.52499 6.82167 6.85765 6.99305 7.13934 7.45835 7.65252 7.79210 7.93739 8.72122 8.86742 9.47259 10.57755 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009981 B = 0.005648 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2804.611167 B = 4956.063099 C = 7069.479448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.132 4.132 3 C -0.108 4.108 4 C -0.106 4.106 5 H 0.076 0.924 6 C -0.111 4.111 7 C -0.137 4.137 8 C 0.102 3.898 9 N -0.615 5.615 10 C 0.578 3.422 11 O -0.529 6.529 12 C -0.213 4.213 13 C -0.047 4.047 14 C -0.214 4.214 15 C -0.056 4.056 16 C -0.222 4.222 17 C 0.197 3.803 18 O -0.192 6.192 19 C -0.393 4.393 20 H 0.109 0.891 21 C 0.071 3.929 22 N -0.871 5.871 23 Si 0.904 3.096 24 H -0.270 1.270 25 H -0.283 1.283 26 H -0.257 1.257 27 C 0.119 3.881 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.098 0.902 41 H 0.117 0.883 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.138 0.862 45 H 0.281 0.719 46 H 0.092 0.908 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.179 16.285 4.932 19.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.170 4.170 3 C -0.146 4.146 4 C -0.126 4.126 5 H 0.095 0.905 6 C -0.149 4.149 7 C -0.175 4.175 8 C -0.021 4.021 9 N -0.350 5.350 10 C 0.368 3.632 11 O -0.404 6.404 12 C -0.218 4.218 13 C -0.066 4.066 14 C -0.233 4.233 15 C -0.075 4.075 16 C -0.241 4.241 17 C 0.142 3.858 18 O -0.094 6.094 19 C -0.468 4.468 20 H 0.127 0.873 21 C -0.134 4.134 22 N -0.508 5.508 23 Si 0.729 3.271 24 H -0.195 1.195 25 H -0.209 1.209 26 H -0.181 1.181 27 C -0.003 4.003 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.117 0.883 41 H 0.135 0.865 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.156 0.844 45 H 0.092 0.908 46 H 0.110 0.890 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.688 15.396 4.849 18.826 hybrid contribution -0.494 -0.196 -0.183 0.562 sum -10.182 15.200 4.666 18.881 Atomic orbital electron populations 1.21761 0.96034 1.01535 1.01421 1.21627 0.95610 0.96976 1.02782 1.21579 0.94153 0.96929 1.01932 1.21590 0.95215 0.96877 0.98873 0.90540 1.21546 0.95479 0.96090 1.01739 1.22006 0.95844 1.01128 0.98526 1.22006 1.00042 0.83314 0.96754 1.47994 1.06158 1.07981 1.72838 1.18245 0.86666 0.82987 0.75329 1.90751 1.75143 1.26790 1.47759 1.18746 0.91965 1.04186 1.06899 1.20730 0.94571 0.94950 0.96366 1.20556 0.93515 1.04082 1.05156 1.20949 0.99003 0.93540 0.93991 1.21261 0.94018 1.03326 1.05498 1.18907 0.90504 0.88040 0.88391 1.83605 1.36139 1.37977 1.51658 1.20827 0.91968 1.06641 1.27370 0.87333 1.24450 1.00352 0.93876 0.94709 1.69626 1.36179 1.15151 1.29797 0.86175 0.83475 0.80060 0.77359 1.19511 1.20899 1.18119 1.21589 0.79736 1.02766 0.96255 0.92912 0.92978 0.92843 0.91843 0.91526 0.91948 0.91820 0.91916 0.91986 0.91194 0.90945 0.91903 0.88345 0.86469 0.86877 0.86785 0.84397 0.90849 0.89019 0.92143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.91 37.16 0.37 -1.02 16 2 C -0.13 -1.47 5.69 -26.73 -0.15 -1.62 16 3 C -0.11 -1.09 4.69 -26.73 -0.13 -1.21 16 4 C -0.11 -1.30 2.34 -90.50 -0.21 -1.51 16 5 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 6 C -0.11 -1.13 5.17 -26.70 -0.14 -1.27 16 7 C -0.14 -1.54 6.10 -26.39 -0.16 -1.70 16 8 C 0.10 1.29 5.53 -3.49 -0.02 1.27 16 9 N -0.62 -10.08 2.97 -173.73 -0.52 -10.59 16 10 C 0.58 12.18 6.87 -12.47 -0.09 12.09 16 11 O -0.53 -13.29 16.16 1.32 0.02 -13.27 16 12 C -0.21 -4.39 4.92 -104.81 -0.52 -4.91 16 13 C -0.05 -0.78 7.41 -39.19 -0.29 -1.07 16 14 C -0.21 -3.29 10.03 -39.61 -0.40 -3.69 16 15 C -0.06 -0.95 10.03 -39.54 -0.40 -1.35 16 16 C -0.22 -4.66 9.16 -39.44 -0.36 -5.02 16 17 C 0.20 4.66 6.64 -38.60 -0.26 4.40 16 18 O -0.19 -5.26 7.77 -3.17 -0.02 -5.29 16 19 C -0.39 -11.23 9.95 30.90 0.31 -10.93 16 20 H 0.11 3.09 5.44 -52.48 -0.29 2.80 16 21 C 0.07 2.04 5.49 -17.52 -0.10 1.94 16 22 N -0.87 -25.29 13.96 55.48 0.77 -24.52 16 23 Si 0.90 23.20 28.62 -169.99 -4.86 18.34 16 24 H -0.27 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.26 -6.82 7.11 56.52 0.40 -6.42 16 27 C 0.12 1.71 5.31 -3.70 -0.02 1.69 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.80 6.70 -51.93 -0.35 0.46 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.10 1.32 4.70 -51.93 -0.24 1.07 16 41 H 0.12 1.57 7.32 -52.49 -0.38 1.19 16 42 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 43 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 44 H 0.14 3.01 5.64 -52.49 -0.30 2.71 16 45 H 0.28 7.56 8.31 -40.82 -0.34 7.22 16 46 H 0.09 1.55 5.74 -51.93 -0.30 1.25 16 47 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 371.84 15.07 5.60 5.60 Total: -1.00 -32.32 371.84 -8.89 -41.20 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -7.33 Total: 2.43 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: -2.55 Total: -13.91 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: 0.26 Total: -35.11 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: 0.00 Total: -18.56 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -4.86 Total: 18.34 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.32 -8.89 -41.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155134398.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.246 kcal (2) G-P(sol) polarization free energy of solvation -32.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds