Wall clock time and date at job start Tue Mar 31 2020 12:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46872 * 2 1 4 4 C 1.53002 * 109.46872 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.49702 * 55.06694 * 4 3 2 6 6 C 1.53039 * 109.52513 * 175.15041 * 4 3 2 7 7 C 1.53031 * 109.53887 * 181.33173 * 6 4 3 8 8 C 1.53620 * 109.24480 * 298.50887 * 7 6 4 9 9 N 1.46923 * 108.54206 * 54.85966 * 8 7 6 10 10 C 1.34782 * 120.63551 * 126.37015 * 9 8 7 11 11 O 1.21595 * 119.99965 * 175.84010 * 10 9 8 12 12 C 1.47531 * 119.99651 * 355.84183 * 10 9 8 13 13 C 1.39673 * 120.19683 * 53.70555 * 12 10 9 14 14 C 1.37833 * 119.91425 * 180.29512 * 13 12 10 15 15 C 1.38575 * 120.32491 * 359.72417 * 14 13 12 16 16 C 1.38020 * 120.40293 * 359.97438 * 15 14 13 17 17 C 1.38842 * 120.07122 * 0.02562 * 16 15 14 18 18 O 1.35515 * 120.15955 * 180.02562 * 17 16 15 19 19 C 1.34819 * 117.00394 * 5.92179 * 18 17 16 20 20 H 1.08009 * 119.99725 * 354.86431 * 19 18 17 21 21 C 1.38690 * 120.00193 * 174.86711 * 19 18 17 22 22 N 1.31522 * 120.00013 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 120.00293 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47248 * 270.00620 * 23 21 19 25 25 H 1.48501 * 109.47070 * 150.00262 * 23 21 19 26 26 H 1.48502 * 109.46736 * 30.00156 * 23 21 19 27 27 C 1.46933 * 118.73707 * 306.09114 * 9 8 7 28 28 H 1.08999 * 109.46977 * 299.99579 * 1 2 3 29 29 H 1.09011 * 109.47014 * 59.99713 * 1 2 3 30 30 H 1.08997 * 109.46927 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46977 * 240.00421 * 2 1 3 32 32 H 1.08994 * 109.47179 * 120.00143 * 2 1 3 33 33 H 1.08999 * 109.46975 * 60.00420 * 3 2 1 34 34 H 1.08994 * 109.47335 * 300.00047 * 3 2 1 35 35 H 1.09000 * 109.45958 * 301.35254 * 6 4 3 36 36 H 1.09002 * 109.45642 * 61.32291 * 6 4 3 37 37 H 1.09004 * 109.49824 * 58.58758 * 7 6 4 38 38 H 1.09004 * 109.49791 * 178.64678 * 7 6 4 39 39 H 1.08993 * 109.74216 * 295.11844 * 8 7 6 40 40 H 1.09003 * 109.66535 * 174.54724 * 8 7 6 41 41 H 1.07994 * 120.04242 * 0.02562 * 13 12 10 42 42 H 1.07999 * 119.83326 * 179.70302 * 14 13 12 43 43 H 1.07998 * 119.79681 * 180.02562 * 15 14 13 44 44 H 1.07993 * 119.96495 * 180.02562 * 16 15 14 45 45 H 0.96998 * 120.00247 * 179.97438 * 22 21 19 46 46 H 1.08996 * 109.58934 * 173.64840 * 27 9 8 47 47 H 1.08997 * 109.58877 * 293.93598 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9341 0.8541 -0.8415 6 6 4.0815 2.8798 -0.1213 7 6 5.6115 2.8774 -0.1541 8 6 6.1452 2.2845 1.1587 9 7 5.5441 0.9576 1.3505 10 6 6.3201 -0.1233 1.5654 11 8 5.8092 -1.2019 1.7977 12 6 7.7893 0.0024 1.5187 13 6 8.4379 0.9580 2.3042 14 6 9.8103 1.0744 2.2515 15 6 10.5518 0.2438 1.4266 16 6 9.9251 -0.7092 0.6494 17 6 8.5435 -0.8409 0.6896 18 8 7.9263 -1.7763 -0.0723 19 6 8.7169 -2.6290 -0.7546 20 1 9.7887 -2.4965 -0.7453 21 6 8.1538 -3.6764 -1.4684 22 7 8.9251 -4.5086 -2.1335 23 14 6.3000 -3.9061 -1.4839 24 1 5.9009 -4.7871 -0.3570 25 1 5.8890 -4.5282 -2.7682 26 1 5.6364 -2.5856 -1.3388 27 6 4.0807 0.8324 1.3097 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9564 -0.8899 35 1 3.6993 3.3245 -1.0401 36 1 3.7377 3.4614 0.7341 37 1 5.9565 2.2755 -0.9948 38 1 5.9746 3.8992 -0.2651 39 1 5.8742 2.9323 1.9923 40 1 7.2297 2.1899 1.1044 41 1 7.8646 1.6076 2.9488 42 1 10.3101 1.8170 2.8558 43 1 11.6268 0.3422 1.3922 44 1 10.5099 -1.3530 0.0094 45 1 8.5313 -5.2413 -2.6324 46 1 3.8027 -0.2206 1.3550 47 1 3.6449 1.3621 2.1567 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155134398.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:49 Heat of formation + Delta-G solvation = -72.545865 kcal Electronic energy + Delta-G solvation = -27580.848528 eV Core-core repulsion = 23920.782983 eV Total energy + Delta-G solvation = -3660.065545 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.72771 -40.47740 -38.77234 -38.20975 -36.20819 -34.56714 -33.70144 -32.45302 -31.55917 -30.87477 -27.61293 -27.14702 -26.71836 -24.24015 -23.83857 -23.06085 -21.88104 -21.41709 -20.46338 -19.92589 -18.94543 -18.14437 -17.34780 -16.82258 -16.46518 -16.24447 -15.84259 -15.55862 -15.50220 -15.46373 -15.24423 -15.04418 -14.83399 -14.50249 -14.32172 -14.16157 -13.94969 -13.82205 -13.35915 -13.24017 -13.02534 -12.81841 -12.77271 -12.48066 -12.40703 -12.21763 -12.17458 -11.97176 -11.85885 -11.58369 -11.53931 -11.47594 -11.11423 -11.02088 -10.78865 -9.84242 -9.61077 -9.18076 -8.62224 -6.31344 0.16853 0.60103 1.14053 1.22020 1.39066 1.66008 2.08534 2.16999 2.67739 2.91126 3.08655 3.53077 3.70680 3.81394 3.90823 4.03556 4.07612 4.17666 4.18944 4.22787 4.27753 4.35243 4.47198 4.54475 4.59073 4.61384 4.73444 4.76799 4.78717 4.83906 4.88570 4.91172 4.97688 5.03691 5.11726 5.12808 5.22795 5.23249 5.28066 5.34336 5.41014 5.45702 5.49517 5.58253 5.63968 5.67218 5.81266 6.12894 6.37256 6.74145 7.18382 7.51560 8.49109 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009981 B = 0.005648 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2804.611167 B = 4956.063099 C = 7069.479448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.137 4.137 3 C -0.098 4.098 4 C -0.103 4.103 5 H 0.035 0.965 6 C -0.104 4.104 7 C -0.136 4.136 8 C 0.093 3.907 9 N -0.607 5.607 10 C 0.564 3.436 11 O -0.588 6.588 12 C -0.220 4.220 13 C -0.038 4.038 14 C -0.178 4.178 15 C -0.049 4.049 16 C -0.241 4.241 17 C 0.154 3.846 18 O -0.236 6.236 19 C -0.398 4.398 20 H 0.095 0.905 21 C 0.027 3.973 22 N -0.909 5.909 23 Si 0.954 3.046 24 H -0.278 1.278 25 H -0.256 1.256 26 H -0.283 1.283 27 C 0.114 3.886 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.048 0.952 31 H 0.038 0.962 32 H 0.048 0.952 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.035 0.965 38 H 0.107 0.893 39 H 0.105 0.895 40 H 0.092 0.908 41 H 0.160 0.840 42 H 0.170 0.830 43 H 0.153 0.847 44 H 0.116 0.884 45 H 0.286 0.714 46 H 0.054 0.946 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.644 21.497 7.278 24.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.175 4.175 3 C -0.136 4.136 4 C -0.123 4.123 5 H 0.054 0.946 6 C -0.142 4.142 7 C -0.174 4.174 8 C -0.028 4.028 9 N -0.339 5.339 10 C 0.355 3.645 11 O -0.469 6.469 12 C -0.224 4.224 13 C -0.056 4.056 14 C -0.196 4.196 15 C -0.067 4.067 16 C -0.260 4.260 17 C 0.103 3.897 18 O -0.142 6.142 19 C -0.474 4.474 20 H 0.112 0.888 21 C -0.173 4.173 22 N -0.550 5.550 23 Si 0.779 3.221 24 H -0.204 1.204 25 H -0.180 1.180 26 H -0.208 1.208 27 C -0.008 4.008 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.109 0.891 37 H 0.054 0.946 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.110 0.890 41 H 0.178 0.822 42 H 0.187 0.813 43 H 0.171 0.829 44 H 0.134 0.866 45 H 0.096 0.904 46 H 0.073 0.927 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.148 20.698 7.200 24.150 hybrid contribution -0.228 -1.447 -0.643 1.600 sum -10.376 19.251 6.557 22.831 Atomic orbital electron populations 1.21724 0.94149 1.01726 1.02641 1.21650 0.97292 0.97769 1.00797 1.21538 0.92205 0.96121 1.03746 1.21559 0.96869 0.97906 0.95920 0.94613 1.21546 0.94505 0.94337 1.03781 1.22022 0.96771 1.02194 0.96385 1.22378 0.99619 0.81646 0.99120 1.48129 1.06838 1.08393 1.70546 1.18547 0.87385 0.83338 0.75274 1.90713 1.76082 1.29212 1.50885 1.19122 0.92076 1.04472 1.06723 1.21251 0.95564 0.93700 0.95076 1.21235 0.92899 1.02778 1.02705 1.21424 1.01162 0.91732 0.92346 1.21315 0.93062 1.04873 1.06787 1.19592 0.92192 0.88325 0.89628 1.83579 1.36433 1.39925 1.54268 1.20816 0.91684 1.07289 1.27603 0.88777 1.24969 1.02990 0.94140 0.95203 1.69664 1.37080 1.16370 1.31852 0.85474 0.80182 0.78397 0.78064 1.20351 1.17974 1.20841 1.21768 0.78790 1.01412 0.98786 0.91443 0.91878 0.93295 0.94275 0.93320 0.89568 0.90278 0.90455 0.89083 0.94623 0.87493 0.87676 0.89033 0.82241 0.81304 0.82919 0.86603 0.90375 0.92720 0.88832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.91 71.98 0.71 -1.83 16 2 C -0.14 -3.13 5.69 30.60 0.17 -2.96 16 3 C -0.10 -1.80 4.69 30.60 0.14 -1.66 16 4 C -0.10 -2.45 2.34 -10.71 -0.03 -2.47 16 5 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 6 C -0.10 -1.76 5.17 30.62 0.16 -1.60 16 7 C -0.14 -2.65 6.10 30.81 0.19 -2.46 16 8 C 0.09 2.03 5.53 86.51 0.48 2.51 16 9 N -0.61 -19.45 2.97 -821.82 -2.44 -21.89 16 10 C 0.56 24.47 6.87 86.69 0.60 25.07 16 11 O -0.59 -31.62 16.16 -0.22 0.00 -31.62 16 12 C -0.22 -9.03 4.92 -19.99 -0.10 -9.13 16 13 C -0.04 -1.08 7.41 22.52 0.17 -0.91 16 14 C -0.18 -4.44 10.03 22.25 0.22 -4.22 16 15 C -0.05 -1.48 10.03 22.30 0.22 -1.26 16 16 C -0.24 -10.35 9.16 22.36 0.20 -10.14 16 17 C 0.15 7.61 6.64 22.91 0.15 7.76 16 18 O -0.24 -14.03 7.77 -16.26 -0.13 -14.16 16 19 C -0.40 -24.61 9.95 67.93 0.68 -23.93 16 20 H 0.09 5.86 5.44 -2.91 -0.02 5.84 16 21 C 0.03 1.67 5.49 84.85 0.47 2.13 16 22 N -0.91 -55.94 13.96 21.62 0.30 -55.64 16 23 Si 0.95 51.59 28.62 68.60 1.96 53.56 16 24 H -0.28 -15.12 7.11 99.48 0.71 -14.41 16 25 H -0.26 -12.43 7.11 99.48 0.71 -11.72 16 26 H -0.28 -16.25 7.11 99.48 0.71 -15.54 16 27 C 0.11 3.26 5.31 86.36 0.46 3.72 16 28 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.05 1.26 6.70 -2.39 -0.02 1.25 16 33 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.03 0.94 8.14 -2.38 -0.02 0.92 16 38 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.09 2.11 4.70 -2.39 -0.01 2.10 16 41 H 0.16 3.27 7.32 -2.91 -0.02 3.25 16 42 H 0.17 2.59 8.06 -2.91 -0.02 2.56 16 43 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 44 H 0.12 5.42 5.64 -2.91 -0.02 5.40 16 45 H 0.29 16.20 8.31 -92.71 -0.77 15.43 16 46 H 0.05 1.98 5.74 -2.39 -0.01 1.97 16 47 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -81.72 371.84 5.55 -76.16 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 0.96 Total: 14.97 kcal Atomic # 6 Polarization: -26.27 SS G_CDS: 4.90 Total: -21.37 kcal Atomic # 7 Polarization: -75.39 SS G_CDS: -2.14 Total: -77.53 kcal Atomic # 8 Polarization: -45.65 SS G_CDS: -0.13 Total: -45.78 kcal Atomic # 14 Polarization: 51.59 SS G_CDS: 1.96 Total: 53.56 kcal Total: -81.72 5.55 -76.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155134398.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.617 kcal (2) G-P(sol) polarization free energy of solvation -81.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds