Wall clock time and date at job start Tue Mar 31 2020 12:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47104 * 2 1 4 4 C 1.53005 * 109.47245 * 174.77192 * 3 2 1 5 5 H 1.08995 * 109.70163 * 294.67895 * 4 3 2 6 6 C 1.53630 * 109.66121 * 55.27200 * 4 3 2 7 7 H 1.08995 * 109.45568 * 294.43315 * 6 4 3 8 8 C 1.53004 * 109.63327 * 54.55695 * 6 4 3 9 9 C 1.53036 * 109.23918 * 174.54816 * 6 4 3 10 10 C 1.53034 * 109.53904 * 298.51068 * 9 6 4 11 11 C 1.53191 * 109.31480 * 61.36841 * 10 9 6 12 12 N 1.46926 * 109.58527 * 174.32144 * 4 3 2 13 13 S 1.65596 * 120.63308 * 6.62930 * 12 4 3 14 14 O 1.42099 * 104.27820 * 164.14297 * 13 12 4 15 15 O 1.42105 * 104.27632 * 36.29141 * 13 12 4 16 16 C 1.81395 * 104.45147 * 280.21820 * 13 12 4 17 17 C 1.53003 * 109.47304 * 180.02562 * 16 13 12 18 18 C 1.52995 * 109.47365 * 180.02562 * 17 16 13 19 19 C 1.50696 * 109.47218 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00299 * 359.97438 * 19 18 17 21 21 C 1.37883 * 120.00102 * 179.97438 * 19 18 17 22 22 N 1.31516 * 119.99536 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00101 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47007 * 90.00119 * 23 21 19 25 25 H 1.48501 * 109.47133 * 209.99545 * 23 21 19 26 26 H 1.48496 * 109.47040 * 330.00107 * 23 21 19 27 27 H 1.09003 * 109.46870 * 60.00853 * 1 2 3 28 28 H 1.08998 * 109.47016 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47551 * 300.00296 * 1 2 3 30 30 H 1.08999 * 109.47453 * 239.99431 * 2 1 3 31 31 H 1.09002 * 109.46405 * 119.99761 * 2 1 3 32 32 H 1.09000 * 109.47571 * 54.77183 * 3 2 1 33 33 H 1.09004 * 109.47384 * 294.77320 * 3 2 1 34 34 H 1.09003 * 109.46941 * 179.83347 * 8 6 4 35 35 H 1.09001 * 109.46966 * 299.83445 * 8 6 4 36 36 H 1.08997 * 109.46834 * 59.83743 * 8 6 4 37 37 H 1.08997 * 109.45764 * 178.48985 * 9 6 4 38 38 H 1.08997 * 109.45976 * 58.53479 * 9 6 4 39 39 H 1.09001 * 109.50287 * 301.41350 * 10 9 6 40 40 H 1.09002 * 109.49849 * 181.31682 * 10 9 6 41 41 H 1.09006 * 109.58759 * 185.57831 * 11 10 9 42 42 H 1.08999 * 109.59043 * 65.14822 * 11 10 9 43 43 H 1.09005 * 109.47103 * 59.99801 * 16 13 12 44 44 H 1.08998 * 109.46853 * 299.99889 * 16 13 12 45 45 H 1.08990 * 109.47049 * 59.99414 * 17 16 13 46 46 H 1.09002 * 109.46619 * 299.99991 * 17 16 13 47 47 H 1.09001 * 109.46726 * 300.00178 * 18 17 16 48 48 H 1.08999 * 109.47393 * 59.99113 * 18 17 16 49 49 H 0.97009 * 119.99667 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5644 1.4445 0.1314 5 1 3.8498 1.0451 1.1046 6 6 4.1805 0.5853 -0.9832 7 1 3.8904 -0.4558 -0.8414 8 6 3.6809 1.0737 -2.3444 9 6 5.7052 0.7031 -0.9263 10 6 6.1151 2.1591 -1.1587 11 6 5.5209 3.0356 -0.0518 12 7 4.0686 2.8178 -0.0045 13 16 3.0203 4.0964 -0.0957 14 8 3.8321 5.2342 0.1604 15 8 1.9585 3.7421 0.7798 16 6 2.4525 4.0943 -1.8185 17 6 1.4666 5.2447 -2.0320 18 6 0.9872 5.2425 -3.4849 19 6 0.0167 6.3760 -3.6954 20 1 -0.2336 7.0321 -2.8748 21 6 -0.5519 6.5755 -4.9356 22 7 -0.2467 5.7769 -5.9349 23 14 -1.7554 7.9801 -5.1963 24 1 -1.0136 9.1962 -5.6159 25 1 -2.7309 7.6066 -6.2518 26 1 -2.4784 8.2541 -3.9285 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8932 -0.5138 0.8901 32 1 1.6023 1.9827 0.8394 33 1 1.7551 1.9286 -0.9331 34 1 4.1219 0.4643 -3.1333 35 1 2.5949 0.9896 -2.3844 36 1 3.9702 2.1151 -2.4852 37 1 6.1471 0.0737 -1.6987 38 1 6.0583 0.3782 0.0524 39 1 5.7411 2.4923 -2.1268 40 1 7.2021 2.2383 -1.1413 41 1 5.7263 4.0845 -0.2663 42 1 5.9626 2.7633 0.9068 43 1 1.9592 3.1472 -2.0373 44 1 3.3073 4.2208 -2.4828 45 1 1.9602 6.1915 -1.8133 46 1 0.6118 5.1186 -1.3675 47 1 1.8419 5.3683 -4.1496 48 1 0.4935 4.2956 -3.7033 49 1 -0.6465 5.9175 -6.8076 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173797765.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:03 Heat of formation + Delta-G solvation = -95.915080 kcal Electronic energy + Delta-G solvation = -27025.050576 eV Core-core repulsion = 23499.415617 eV Total energy + Delta-G solvation = -3525.634959 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.79246 -37.18856 -35.76070 -35.00498 -34.62333 -33.23803 -32.19691 -31.49588 -27.96789 -27.67205 -26.33490 -24.28642 -23.33128 -22.91009 -21.01372 -20.52257 -19.54091 -18.37355 -17.32641 -16.53327 -16.46647 -15.72807 -15.61015 -15.13652 -14.85790 -14.55232 -14.47196 -14.10976 -14.02142 -13.61643 -13.55811 -13.00470 -12.62954 -12.37984 -12.30880 -12.23497 -12.00504 -11.88753 -11.76235 -11.68926 -11.54769 -11.36597 -11.21821 -11.09879 -11.07946 -10.94180 -10.90259 -10.69831 -10.58830 -10.40027 -10.36013 -9.94261 -9.89290 -9.44085 -9.19766 -8.83513 -8.40540 -6.05589 -4.08491 0.47858 2.74835 3.30374 3.36536 3.40650 3.98563 4.27784 4.32004 4.42716 4.62269 4.66779 4.79282 4.86602 4.97842 5.08724 5.10633 5.13884 5.18771 5.29118 5.30927 5.35417 5.45028 5.46354 5.59832 5.63439 5.69259 5.77332 5.79523 5.85992 5.87557 5.89651 5.92599 6.02195 6.04781 6.13945 6.20833 6.26507 6.27282 6.32336 6.47521 6.56036 6.64609 6.87890 7.57321 7.67377 7.92504 8.33227 8.97685 9.56187 11.05577 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014786 B = 0.003948 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.259386 B = 7090.681407 C = 7500.954533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.113 4.113 3 C -0.188 4.188 4 C 0.167 3.833 5 H 0.077 0.923 6 C -0.103 4.103 7 H 0.081 0.919 8 C -0.161 4.161 9 C -0.111 4.111 10 C -0.140 4.140 11 C 0.120 3.880 12 N -0.998 5.998 13 S 2.596 3.404 14 O -0.965 6.965 15 O -0.956 6.956 16 C -0.615 4.615 17 C -0.104 4.104 18 C 0.032 3.968 19 C -0.526 4.526 20 H 0.058 0.942 21 C 0.058 3.942 22 N -0.895 5.895 23 Si 0.893 3.107 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.273 1.273 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.129 0.871 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.094 0.906 42 H 0.068 0.932 43 H 0.131 0.869 44 H 0.126 0.874 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.020 0.980 48 H 0.020 0.980 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.581 -14.317 11.153 21.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.151 4.151 3 C -0.226 4.226 4 C 0.061 3.939 5 H 0.095 0.905 6 C -0.123 4.123 7 H 0.099 0.901 8 C -0.218 4.218 9 C -0.148 4.148 10 C -0.179 4.179 11 C -0.006 4.006 12 N -0.835 5.835 13 S 2.695 3.305 14 O -0.955 6.955 15 O -0.946 6.946 16 C -0.746 4.746 17 C -0.144 4.144 18 C -0.006 4.006 19 C -0.564 4.564 20 H 0.076 0.924 21 C -0.143 4.143 22 N -0.534 5.534 23 Si 0.721 3.279 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.197 1.197 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.147 0.853 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.113 0.887 42 H 0.086 0.914 43 H 0.149 0.851 44 H 0.145 0.855 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.038 0.962 48 H 0.038 0.962 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.357 -13.759 11.729 21.351 hybrid contribution -0.531 0.366 -1.086 1.263 sum 10.826 -13.393 10.643 20.245 Atomic orbital electron populations 1.21784 0.95523 1.01342 1.02604 1.21431 0.96219 0.95580 1.01867 1.23062 0.93730 0.99777 1.06041 1.21075 0.93347 0.81124 0.98368 0.90527 1.21618 0.95378 0.99628 0.95649 0.90081 1.22098 1.01616 1.02092 0.95944 1.21492 0.95282 0.96431 1.01644 1.21992 1.00474 0.95724 0.99666 1.21410 0.79103 1.00968 0.99074 1.57872 1.16538 1.19860 1.89232 1.05454 0.73864 0.72670 0.78533 1.93530 1.67856 1.49283 1.84876 1.93496 1.56605 1.81851 1.62665 1.30858 1.11011 1.09681 1.23082 1.21488 0.95695 0.93239 1.03935 1.19040 0.96232 0.97503 0.87812 1.21255 1.25596 1.13639 0.95923 0.92409 1.25010 0.96798 0.96430 0.96063 1.69962 1.43985 1.37874 1.01593 0.86570 0.80955 0.82396 0.77993 1.20571 1.21170 1.19731 0.92342 0.92946 0.92376 0.91798 0.91999 0.85298 0.91237 0.92504 0.91906 0.91876 0.91876 0.92015 0.90915 0.90990 0.88734 0.91391 0.85140 0.85530 0.91747 0.91653 0.96194 0.96158 0.92926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 9.91 37.16 0.37 -1.22 16 2 C -0.11 -1.08 5.19 -26.73 -0.14 -1.22 16 3 C -0.19 -2.19 2.77 -26.73 -0.07 -2.27 16 4 C 0.17 1.73 2.76 -67.37 -0.19 1.55 16 5 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 6 C -0.10 -0.90 2.21 -90.27 -0.20 -1.10 16 7 H 0.08 0.62 6.84 -51.93 -0.36 0.27 16 8 C -0.16 -1.61 7.44 37.16 0.28 -1.33 16 9 C -0.11 -0.87 5.43 -26.70 -0.14 -1.01 16 10 C -0.14 -1.18 5.74 -26.61 -0.15 -1.33 16 11 C 0.12 1.22 6.38 -3.71 -0.02 1.20 16 12 N -1.00 -11.90 2.64 -106.23 -0.28 -12.18 16 13 S 2.60 40.16 4.83 -107.50 -0.52 39.64 16 14 O -0.97 -17.51 16.41 -57.54 -0.94 -18.46 16 15 O -0.96 -16.45 14.03 -57.54 -0.81 -17.26 16 16 C -0.62 -9.83 4.73 37.16 0.18 -9.65 16 17 C -0.10 -2.13 5.16 -26.73 -0.14 -2.27 16 18 C 0.03 0.82 4.97 -27.89 -0.14 0.68 16 19 C -0.53 -14.82 9.11 -34.44 -0.31 -15.14 16 20 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 21 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 22 N -0.90 -26.54 13.29 55.43 0.74 -25.80 16 23 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.55 6.23 -51.93 -0.32 0.23 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.13 1.77 5.44 -51.99 -0.28 1.49 16 33 H 0.07 0.86 3.57 -51.93 -0.19 0.68 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.66 5.71 -51.93 -0.30 0.36 16 36 H 0.06 0.68 4.34 -51.93 -0.23 0.45 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.66 6.34 -51.93 -0.33 0.33 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.09 1.04 6.80 -51.93 -0.35 0.68 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.13 1.91 4.87 -51.92 -0.25 1.66 16 44 H 0.13 1.84 7.75 -51.92 -0.40 1.43 16 45 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 46 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 47 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 367.24 15.07 5.53 5.53 Total: -1.00 -32.72 367.24 -10.55 -43.27 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -8.47 Total: 0.20 kcal Atomic # 6 Polarization: -30.76 SS G_CDS: -0.79 Total: -31.54 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.46 Total: -37.98 kcal Atomic # 8 Polarization: -33.97 SS G_CDS: -1.75 Total: -35.72 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 40.16 SS G_CDS: -0.52 Total: 39.64 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.72 -10.55 -43.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173797765.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.641 kcal (2) G-P(sol) polarization free energy of solvation -32.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds