Wall clock time and date at job start Tue Mar 31 2020 12:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47104 * 2 1 4 4 C 1.53005 * 109.47245 * 174.77192 * 3 2 1 5 5 H 1.08995 * 109.70163 * 294.67895 * 4 3 2 6 6 C 1.53630 * 109.66121 * 55.27200 * 4 3 2 7 7 H 1.08995 * 109.45568 * 294.43315 * 6 4 3 8 8 C 1.53004 * 109.63327 * 54.55695 * 6 4 3 9 9 C 1.53036 * 109.23918 * 174.54816 * 6 4 3 10 10 C 1.53034 * 109.53904 * 298.51068 * 9 6 4 11 11 C 1.53191 * 109.31480 * 61.36841 * 10 9 6 12 12 N 1.46926 * 109.58527 * 174.32144 * 4 3 2 13 13 S 1.65596 * 120.63308 * 6.62930 * 12 4 3 14 14 O 1.42099 * 104.27820 * 164.14297 * 13 12 4 15 15 O 1.42105 * 104.27632 * 36.29141 * 13 12 4 16 16 C 1.81395 * 104.45147 * 280.21820 * 13 12 4 17 17 C 1.53003 * 109.47304 * 180.02562 * 16 13 12 18 18 C 1.52995 * 109.47365 * 180.02562 * 17 16 13 19 19 C 1.50696 * 109.47218 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00299 * 359.97438 * 19 18 17 21 21 C 1.37883 * 120.00102 * 179.97438 * 19 18 17 22 22 N 1.31516 * 119.99536 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00101 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47007 * 90.00119 * 23 21 19 25 25 H 1.48501 * 109.47133 * 209.99545 * 23 21 19 26 26 H 1.48496 * 109.47040 * 330.00107 * 23 21 19 27 27 H 1.09003 * 109.46870 * 60.00853 * 1 2 3 28 28 H 1.08998 * 109.47016 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47551 * 300.00296 * 1 2 3 30 30 H 1.08999 * 109.47453 * 239.99431 * 2 1 3 31 31 H 1.09002 * 109.46405 * 119.99761 * 2 1 3 32 32 H 1.09000 * 109.47571 * 54.77183 * 3 2 1 33 33 H 1.09004 * 109.47384 * 294.77320 * 3 2 1 34 34 H 1.09003 * 109.46941 * 179.83347 * 8 6 4 35 35 H 1.09001 * 109.46966 * 299.83445 * 8 6 4 36 36 H 1.08997 * 109.46834 * 59.83743 * 8 6 4 37 37 H 1.08997 * 109.45764 * 178.48985 * 9 6 4 38 38 H 1.08997 * 109.45976 * 58.53479 * 9 6 4 39 39 H 1.09001 * 109.50287 * 301.41350 * 10 9 6 40 40 H 1.09002 * 109.49849 * 181.31682 * 10 9 6 41 41 H 1.09006 * 109.58759 * 185.57831 * 11 10 9 42 42 H 1.08999 * 109.59043 * 65.14822 * 11 10 9 43 43 H 1.09005 * 109.47103 * 59.99801 * 16 13 12 44 44 H 1.08998 * 109.46853 * 299.99889 * 16 13 12 45 45 H 1.08990 * 109.47049 * 59.99414 * 17 16 13 46 46 H 1.09002 * 109.46619 * 299.99991 * 17 16 13 47 47 H 1.09001 * 109.46726 * 300.00178 * 18 17 16 48 48 H 1.08999 * 109.47393 * 59.99113 * 18 17 16 49 49 H 0.97009 * 119.99667 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5644 1.4445 0.1314 5 1 3.8498 1.0451 1.1046 6 6 4.1805 0.5853 -0.9832 7 1 3.8904 -0.4558 -0.8414 8 6 3.6809 1.0737 -2.3444 9 6 5.7052 0.7031 -0.9263 10 6 6.1151 2.1591 -1.1587 11 6 5.5209 3.0356 -0.0518 12 7 4.0686 2.8178 -0.0045 13 16 3.0203 4.0964 -0.0957 14 8 3.8321 5.2342 0.1604 15 8 1.9585 3.7421 0.7798 16 6 2.4525 4.0943 -1.8185 17 6 1.4666 5.2447 -2.0320 18 6 0.9872 5.2425 -3.4849 19 6 0.0167 6.3760 -3.6954 20 1 -0.2336 7.0321 -2.8748 21 6 -0.5519 6.5755 -4.9356 22 7 -0.2467 5.7769 -5.9349 23 14 -1.7554 7.9801 -5.1963 24 1 -1.0136 9.1962 -5.6159 25 1 -2.7309 7.6066 -6.2518 26 1 -2.4784 8.2541 -3.9285 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8932 -0.5138 0.8901 32 1 1.6023 1.9827 0.8394 33 1 1.7551 1.9286 -0.9331 34 1 4.1219 0.4643 -3.1333 35 1 2.5949 0.9896 -2.3844 36 1 3.9702 2.1151 -2.4852 37 1 6.1471 0.0737 -1.6987 38 1 6.0583 0.3782 0.0524 39 1 5.7411 2.4923 -2.1268 40 1 7.2021 2.2383 -1.1413 41 1 5.7263 4.0845 -0.2663 42 1 5.9626 2.7633 0.9068 43 1 1.9592 3.1472 -2.0373 44 1 3.3073 4.2208 -2.4828 45 1 1.9602 6.1915 -1.8133 46 1 0.6118 5.1186 -1.3675 47 1 1.8419 5.3683 -4.1496 48 1 0.4935 4.2956 -3.7033 49 1 -0.6465 5.9175 -6.8076 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173797765.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:02 Heat of formation + Delta-G solvation = -115.581024 kcal Electronic energy + Delta-G solvation = -27025.903355 eV Core-core repulsion = 23499.415617 eV Total energy + Delta-G solvation = -3526.487738 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.60252 -38.46281 -37.09966 -36.54784 -35.76091 -34.25098 -34.02274 -32.27031 -29.75800 -28.55785 -27.14599 -25.81627 -24.61253 -23.69324 -22.32331 -21.76518 -20.55361 -19.38801 -18.71098 -18.22393 -17.58260 -17.13135 -16.55699 -16.49031 -16.09895 -15.92729 -15.50383 -15.24463 -14.84354 -14.52229 -14.44929 -14.34283 -14.12834 -13.89859 -13.51779 -13.29885 -13.24701 -13.18752 -13.00722 -12.80700 -12.78798 -12.62174 -12.57926 -12.49924 -12.17029 -12.10772 -11.86361 -11.84429 -11.82208 -11.53728 -11.39649 -11.34778 -11.15801 -11.07935 -10.73160 -10.59189 -9.81868 -8.24139 -6.35397 -0.77778 1.38847 1.39624 1.51091 1.64182 2.38480 2.73229 3.09216 3.11420 3.41135 3.69092 3.78605 3.87427 3.96644 4.09626 4.14757 4.21249 4.31410 4.34846 4.36735 4.48169 4.55027 4.62494 4.63669 4.72631 4.86158 4.88221 4.89885 4.98640 5.01673 5.02781 5.08128 5.09213 5.12343 5.20900 5.31478 5.33115 5.36049 5.42011 5.43979 5.48207 5.57481 5.59390 5.65765 5.76909 5.79467 6.17591 6.79590 7.33972 8.87359 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014786 B = 0.003948 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.259386 B = 7090.681407 C = 7500.954533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.108 4.108 3 C -0.192 4.192 4 C 0.164 3.836 5 H 0.095 0.905 6 C -0.097 4.097 7 H 0.101 0.899 8 C -0.166 4.166 9 C -0.108 4.108 10 C -0.138 4.138 11 C 0.111 3.889 12 N -0.990 5.990 13 S 2.615 3.385 14 O -0.993 6.993 15 O -0.974 6.974 16 C -0.616 4.616 17 C -0.102 4.102 18 C 0.036 3.964 19 C -0.553 4.553 20 H 0.059 0.941 21 C 0.005 3.995 22 N -0.929 5.929 23 Si 0.962 3.038 24 H -0.271 1.271 25 H -0.279 1.279 26 H -0.265 1.265 27 H 0.041 0.959 28 H 0.068 0.932 29 H 0.049 0.951 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.107 0.893 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.141 0.859 44 H 0.138 0.862 45 H 0.063 0.937 46 H 0.064 0.936 47 H 0.001 0.999 48 H 0.002 0.998 49 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.623 -15.638 11.897 23.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.146 4.146 3 C -0.231 4.231 4 C 0.059 3.941 5 H 0.113 0.887 6 C -0.117 4.117 7 H 0.119 0.881 8 C -0.223 4.223 9 C -0.145 4.145 10 C -0.177 4.177 11 C -0.013 4.013 12 N -0.829 5.829 13 S 2.713 3.287 14 O -0.983 6.983 15 O -0.965 6.965 16 C -0.745 4.745 17 C -0.141 4.141 18 C -0.003 4.003 19 C -0.591 4.591 20 H 0.077 0.923 21 C -0.193 4.193 22 N -0.569 5.569 23 Si 0.786 3.214 24 H -0.197 1.197 25 H -0.204 1.204 26 H -0.189 1.189 27 H 0.060 0.940 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.125 0.875 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.110 0.890 41 H 0.101 0.899 42 H 0.106 0.894 43 H 0.159 0.841 44 H 0.156 0.844 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.019 0.981 48 H 0.020 0.980 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.394 -15.072 12.469 23.157 hybrid contribution -0.822 0.718 -1.309 1.704 sum 11.572 -14.353 11.160 21.552 Atomic orbital electron populations 1.21820 0.96363 1.02049 1.01391 1.21428 0.95478 0.94335 1.03366 1.23030 0.94859 1.00906 1.04279 1.21289 0.92472 0.80253 1.00078 0.88729 1.21616 0.96162 1.00038 0.93841 0.88121 1.22145 1.01128 1.01722 0.97325 1.21499 0.94215 0.95912 1.02899 1.22005 1.01524 0.95896 0.98305 1.21664 0.77766 1.00972 1.00905 1.57627 1.16907 1.19594 1.88768 1.04676 0.73632 0.72806 0.77601 1.93489 1.68499 1.51294 1.85015 1.93497 1.57817 1.82229 1.62917 1.30843 1.10455 1.08293 1.24938 1.21284 0.96886 0.95229 1.00736 1.18910 0.94972 0.95838 0.90537 1.21719 1.26456 1.14575 0.96367 0.92264 1.25918 0.98604 0.99103 0.95724 1.70076 1.45118 1.39567 1.02106 0.85489 0.78596 0.79054 0.78213 1.19676 1.20417 1.18910 0.94001 0.91266 0.93194 0.90511 0.90109 0.87534 0.92618 0.91602 0.92907 0.93022 0.90701 0.90589 0.91915 0.89030 0.89896 0.89446 0.84060 0.84351 0.91878 0.91684 0.98077 0.97973 0.92610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.15 9.91 71.98 0.71 -2.43 16 2 C -0.11 -1.88 5.19 30.59 0.16 -1.72 16 3 C -0.19 -4.34 2.77 30.59 0.08 -4.25 16 4 C 0.16 3.07 2.76 45.12 0.12 3.20 16 5 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 6 C -0.10 -1.42 2.21 -10.57 -0.02 -1.45 16 7 H 0.10 1.15 6.84 -2.39 -0.02 1.13 16 8 C -0.17 -3.09 7.44 71.98 0.54 -2.56 16 9 C -0.11 -1.30 5.43 30.62 0.17 -1.13 16 10 C -0.14 -1.98 5.74 30.67 0.18 -1.81 16 11 C 0.11 2.06 6.38 86.36 0.55 2.61 16 12 N -0.99 -22.38 2.64 -490.00 -1.29 -23.67 16 13 S 2.62 81.39 4.83 -56.49 -0.27 81.11 16 14 O -0.99 -36.30 16.41 -127.65 -2.09 -38.39 16 15 O -0.97 -33.98 14.03 -127.65 -1.79 -35.77 16 16 C -0.62 -20.19 4.73 71.98 0.34 -19.85 16 17 C -0.10 -4.34 5.16 30.59 0.16 -4.18 16 18 C 0.04 1.88 4.97 29.85 0.15 2.03 16 19 C -0.55 -31.93 9.11 25.60 0.23 -31.69 16 20 H 0.06 3.31 7.74 -2.91 -0.02 3.28 16 21 C 0.00 0.28 5.46 84.66 0.46 0.74 16 22 N -0.93 -56.04 13.29 21.45 0.28 -55.76 16 23 Si 0.96 44.52 29.54 68.60 2.03 46.54 16 24 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 25 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 26 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 27 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.07 1.11 8.14 -2.39 -0.02 1.10 16 29 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.08 1.15 6.23 -2.39 -0.01 1.13 16 31 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.11 2.93 5.44 -3.32 -0.02 2.92 16 33 H 0.06 1.39 3.57 -2.38 -0.01 1.38 16 34 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.05 1.08 5.71 -2.39 -0.01 1.06 16 36 H 0.05 1.07 4.34 -2.39 -0.01 1.06 16 37 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.06 1.04 6.34 -2.39 -0.02 1.02 16 40 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.08 1.75 6.80 -2.38 -0.02 1.73 16 42 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.14 4.29 4.87 -2.39 -0.01 4.28 16 44 H 0.14 4.13 7.75 -2.39 -0.02 4.11 16 45 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 46 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 47 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 48 H 0.00 0.10 8.14 -2.39 -0.02 0.09 16 49 H 0.27 14.98 8.31 -92.70 -0.77 14.21 16 Total: -1.00 -71.19 367.24 1.60 -69.59 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: 0.91 Total: 18.85 kcal Atomic # 6 Polarization: -66.33 SS G_CDS: 3.83 Total: -62.50 kcal Atomic # 7 Polarization: -78.42 SS G_CDS: -1.01 Total: -79.43 kcal Atomic # 8 Polarization: -70.28 SS G_CDS: -3.89 Total: -74.17 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 16 Polarization: 81.39 SS G_CDS: -0.27 Total: 81.11 kcal Total: -71.19 1.60 -69.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173797765.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.993 kcal (2) G-P(sol) polarization free energy of solvation -71.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds