Wall clock time and date at job start Tue Mar 31 2020 11:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47553 * 2 1 4 4 C 1.53000 * 109.47060 * 120.00268 * 2 1 3 5 5 C 1.53001 * 109.47190 * 64.99962 * 4 2 1 6 6 H 1.09003 * 110.88408 * 308.88070 * 5 4 2 7 7 C 1.55152 * 111.00760 * 184.99843 * 5 4 2 8 8 C 1.54321 * 102.94427 * 206.38143 * 7 5 4 9 9 N 1.47023 * 107.27145 * 22.19693 * 8 7 5 10 10 C 1.34767 * 125.64841 * 181.01720 * 9 8 7 11 11 O 1.21596 * 120.00037 * 174.86125 * 10 9 8 12 12 C 1.47540 * 120.00277 * 354.86696 * 10 9 8 13 13 C 1.39670 * 120.19261 * 314.83709 * 12 10 9 14 14 C 1.37824 * 119.91742 * 180.02562 * 13 12 10 15 15 C 1.38577 * 120.32330 * 0.02706 * 14 13 12 16 16 C 1.38029 * 120.40150 * 359.69701 * 15 14 13 17 17 C 1.38827 * 120.06811 * 0.55462 * 16 15 14 18 18 O 1.35518 * 120.15948 * 179.74365 * 17 16 15 19 19 C 1.34821 * 117.00153 * 5.21277 * 18 17 16 20 20 H 1.08005 * 119.99453 * 354.90671 * 19 18 17 21 21 C 1.38692 * 120.00560 * 174.91425 * 19 18 17 22 22 N 1.31520 * 119.99911 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00284 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47436 * 59.99463 * 23 21 19 25 25 H 1.48504 * 109.46787 * 299.99415 * 23 21 19 26 26 H 1.48496 * 109.47042 * 180.02562 * 23 21 19 27 27 C 1.47429 * 108.70165 * 1.28151 * 9 8 7 28 28 H 1.09004 * 109.47220 * 59.99397 * 1 2 3 29 29 H 1.08995 * 109.47522 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47215 * 300.00097 * 1 2 3 31 31 H 1.09005 * 109.47108 * 239.99977 * 2 1 3 32 32 H 1.08997 * 109.47409 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.47350 * 300.00524 * 3 2 1 34 34 H 1.09005 * 109.46933 * 59.99869 * 3 2 1 35 35 H 1.08991 * 109.47111 * 305.00127 * 4 2 1 36 36 H 1.09000 * 109.46937 * 184.99448 * 4 2 1 37 37 H 1.09003 * 110.71677 * 88.02212 * 7 5 4 38 38 H 1.09000 * 110.71818 * 324.75201 * 7 5 4 39 39 H 1.09000 * 109.88635 * 262.77503 * 8 7 5 40 40 H 1.09002 * 109.87833 * 141.60840 * 8 7 5 41 41 H 1.07998 * 120.04064 * 0.05260 * 13 12 10 42 42 H 1.07999 * 119.83794 * 179.97438 * 14 13 12 43 43 H 1.08000 * 119.79923 * 179.97438 * 15 14 13 44 44 H 1.07998 * 119.96354 * 180.30304 * 16 15 14 45 45 H 0.97009 * 120.00231 * 0.02562 * 22 21 19 46 46 H 1.09003 * 110.36386 * 94.48210 * 27 9 8 47 47 H 1.08996 * 110.36942 * 216.80685 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6352 -2.1955 1.1879 6 1 0.5692 -2.2977 0.9846 7 6 2.0253 -2.9343 2.4953 8 6 2.1952 -4.3956 2.0291 9 7 2.4533 -4.3649 0.5820 10 6 2.6385 -5.4425 -0.2058 11 8 2.7525 -5.3041 -1.4084 12 6 2.7029 -6.7903 0.3910 13 6 3.4675 -7.0149 1.5380 14 6 3.5240 -8.2763 2.0904 15 6 2.8260 -9.3249 1.5129 16 6 2.0618 -9.1167 0.3825 17 6 1.9973 -7.8539 -0.1906 18 8 1.2517 -7.6486 -1.3035 19 6 0.5104 -8.6852 -1.7435 20 1 0.5912 -9.6491 -1.2631 21 6 -0.3559 -8.5138 -2.8130 22 7 -0.4546 -7.3399 -3.3977 23 14 -1.3835 -9.9499 -3.4221 24 1 -2.2596 -10.4324 -2.3245 25 1 -0.4867 -11.0498 -3.8595 26 1 -2.2203 -9.5094 -4.5669 27 6 2.4822 -2.9598 0.1367 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6053 -0.2619 2.1369 36 1 3.1263 -0.6445 1.2951 37 1 1.2286 -2.8557 3.2350 38 1 2.9624 -2.5449 2.8933 39 1 1.2834 -4.9576 2.2312 40 1 3.0381 -4.8540 2.5463 41 1 4.0133 -6.2009 1.9918 42 1 4.1159 -8.4486 2.9772 43 1 2.8766 -10.3100 1.9526 44 1 1.5167 -9.9380 -0.0589 45 1 0.0788 -6.5940 -3.0812 46 1 3.5061 -2.5860 0.1268 47 1 2.0337 -2.8659 -0.8523 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174584620.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:14 Heat of formation + Delta-G solvation = -56.320680 kcal Electronic energy + Delta-G solvation = -26945.988849 eV Core-core repulsion = 23286.626881 eV Total energy + Delta-G solvation = -3659.361968 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.05628 -38.94838 -37.49369 -36.46803 -35.78693 -32.33134 -31.97217 -30.37491 -29.22409 -28.97113 -27.32004 -26.19720 -24.95559 -23.72651 -22.11951 -21.57975 -20.81060 -19.77131 -19.20582 -18.43599 -17.27359 -16.31222 -16.27246 -15.24609 -15.14518 -14.80851 -14.53215 -14.27977 -14.08773 -13.85884 -13.73618 -13.59617 -13.48171 -13.16479 -12.90728 -12.54020 -12.46116 -12.34590 -12.27452 -11.90425 -11.67817 -11.41035 -11.36198 -11.18292 -11.07331 -10.86162 -10.83252 -10.59573 -10.53657 -10.46809 -10.38343 -10.30359 -9.61271 -9.12490 -8.82215 -8.37328 -8.20215 -7.40320 -6.80728 -4.09363 1.72505 2.24134 3.22136 3.27616 3.33272 3.44215 3.51731 4.08155 4.35216 4.48026 4.55889 4.64157 4.82733 4.87680 4.94413 5.06563 5.14749 5.22862 5.32007 5.35012 5.39224 5.44988 5.48060 5.58174 5.64392 5.65486 5.70935 5.73553 5.76908 5.81215 5.86757 5.91671 5.98510 6.04891 6.08446 6.11040 6.13415 6.25586 6.33648 6.47152 6.55748 6.72629 6.92372 7.03001 7.18825 7.45353 7.58896 7.96108 8.35693 8.82264 8.87912 9.55013 10.63005 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012149 B = 0.003881 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.238669 B = 7213.067826 C = 8998.858799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.102 4.102 3 C -0.146 4.146 4 C -0.100 4.100 5 C -0.105 4.105 6 H 0.088 0.912 7 C -0.127 4.127 8 C 0.102 3.898 9 N -0.624 5.624 10 C 0.589 3.411 11 O -0.523 6.523 12 C -0.219 4.219 13 C -0.041 4.041 14 C -0.224 4.224 15 C -0.054 4.054 16 C -0.232 4.232 17 C 0.192 3.808 18 O -0.169 6.169 19 C -0.478 4.478 20 H 0.086 0.914 21 C 0.014 3.986 22 N -0.866 5.866 23 Si 1.097 2.903 24 H -0.280 1.280 25 H -0.280 1.280 26 H -0.272 1.272 27 C 0.114 3.886 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.116 0.884 42 H 0.111 0.889 43 H 0.112 0.888 44 H 0.133 0.867 45 H 0.289 0.711 46 H 0.062 0.938 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.030 10.800 13.348 17.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.120 4.120 3 C -0.203 4.203 4 C -0.138 4.138 5 C -0.124 4.124 6 H 0.107 0.893 7 C -0.165 4.165 8 C -0.021 4.021 9 N -0.361 5.361 10 C 0.380 3.620 11 O -0.399 6.399 12 C -0.223 4.223 13 C -0.060 4.060 14 C -0.243 4.243 15 C -0.072 4.072 16 C -0.251 4.251 17 C 0.135 3.865 18 O -0.070 6.070 19 C -0.554 4.554 20 H 0.104 0.896 21 C -0.194 4.194 22 N -0.496 5.496 23 Si 0.920 3.080 24 H -0.206 1.206 25 H -0.206 1.206 26 H -0.197 1.197 27 C -0.009 4.009 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.134 0.866 42 H 0.129 0.871 43 H 0.130 0.870 44 H 0.151 0.849 45 H 0.100 0.900 46 H 0.080 0.920 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.887 10.577 11.256 15.713 hybrid contribution 1.241 0.218 1.360 1.853 sum 4.127 10.795 12.616 17.109 Atomic orbital electron populations 1.21897 0.95207 1.02140 1.01470 1.21161 0.96083 0.96030 0.98741 1.21832 1.00830 0.96102 1.01572 1.21572 1.00848 0.93427 0.97940 1.22525 1.00728 0.94295 0.94843 0.89348 1.22707 1.02128 0.94254 0.97417 1.22067 1.01351 0.97087 0.81575 1.48346 1.73422 1.05617 1.08689 1.17883 0.75464 0.83178 0.85483 1.90793 1.49105 1.85818 1.14146 1.18709 1.10493 0.91908 1.01240 1.20783 0.95846 0.96860 0.92497 1.20492 1.07199 0.93365 1.03265 1.20908 0.94114 0.97982 0.94233 1.21146 1.06513 0.97413 1.00075 1.19048 0.90105 0.91767 0.85604 1.83732 1.49765 1.39624 1.33880 1.22338 1.23328 0.90357 1.19342 0.89608 1.26623 0.96652 1.03424 0.92724 1.70489 1.38049 1.01755 1.39293 0.83112 0.75652 0.72353 0.76884 1.20637 1.20592 1.19673 1.22236 0.99169 0.80830 0.98681 0.92838 0.92197 0.92881 0.90852 0.92801 0.92788 0.92885 0.91547 0.91678 0.90243 0.90688 0.91491 0.91357 0.86586 0.87098 0.87027 0.84931 0.90027 0.92030 0.90570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.97 37.16 0.33 -1.08 16 2 C -0.10 -0.94 2.87 -90.62 -0.26 -1.20 16 3 C -0.15 -1.16 9.19 37.16 0.34 -0.82 16 4 C -0.10 -0.88 4.19 -26.73 -0.11 -0.99 16 5 C -0.10 -1.16 2.90 -88.35 -0.26 -1.41 16 6 H 0.09 1.06 6.31 -51.93 -0.33 0.73 16 7 C -0.13 -1.26 6.42 -24.90 -0.16 -1.42 16 8 C 0.10 1.38 5.92 -3.06 -0.02 1.36 16 9 N -0.62 -10.99 3.32 -171.60 -0.57 -11.56 16 10 C 0.59 13.43 7.16 -12.47 -0.09 13.35 16 11 O -0.52 -14.27 16.60 -7.32 -0.12 -14.40 16 12 C -0.22 -4.88 5.39 -104.81 -0.56 -5.44 16 13 C -0.04 -0.74 8.43 -39.20 -0.33 -1.07 16 14 C -0.22 -3.73 10.02 -39.61 -0.40 -4.13 16 15 C -0.05 -0.96 10.03 -39.53 -0.40 -1.36 16 16 C -0.23 -5.10 9.16 -39.44 -0.36 -5.46 16 17 C 0.19 4.85 6.63 -38.60 -0.26 4.59 16 18 O -0.17 -5.01 8.09 -11.81 -0.10 -5.10 16 19 C -0.48 -13.76 9.49 30.90 0.29 -13.47 16 20 H 0.09 2.27 5.20 -52.48 -0.27 2.00 16 21 C 0.01 0.39 5.49 -17.52 -0.10 0.29 16 22 N -0.87 -26.82 13.70 55.48 0.76 -26.06 16 23 Si 1.10 23.92 29.92 -169.99 -5.09 18.84 16 24 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 25 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 26 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 27 C 0.11 1.68 5.84 -2.41 -0.01 1.66 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.63 6.42 -51.93 -0.33 0.30 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.78 7.55 -51.93 -0.39 0.39 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.55 7.96 -51.93 -0.41 0.14 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.64 8.04 -51.93 -0.42 0.22 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.07 0.83 5.76 -51.93 -0.30 0.53 16 41 H 0.12 1.72 6.19 -52.49 -0.32 1.40 16 42 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 43 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 44 H 0.13 2.90 5.63 -52.49 -0.30 2.60 16 45 H 0.29 9.47 7.97 -40.82 -0.33 9.15 16 46 H 0.06 0.84 7.91 -51.93 -0.41 0.43 16 47 H 0.08 1.29 7.89 -51.93 -0.41 0.88 16 LS Contribution 375.14 15.07 5.65 5.65 Total: -1.00 -34.38 375.14 -9.05 -43.43 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -7.25 Total: 5.81 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: -2.34 Total: -16.61 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.19 Total: -37.62 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.22 Total: -19.50 kcal Atomic # 14 Polarization: 23.92 SS G_CDS: -5.09 Total: 18.84 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.38 -9.05 -43.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174584620.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.894 kcal (2) G-P(sol) polarization free energy of solvation -34.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds