Wall clock time and date at job start Tue Mar 31 2020 11:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47553 * 2 1 4 4 C 1.53000 * 109.47060 * 120.00268 * 2 1 3 5 5 C 1.53001 * 109.47190 * 64.99962 * 4 2 1 6 6 H 1.09003 * 110.88408 * 308.88070 * 5 4 2 7 7 C 1.55152 * 111.00760 * 184.99843 * 5 4 2 8 8 C 1.54321 * 102.94427 * 206.38143 * 7 5 4 9 9 N 1.47023 * 107.27145 * 22.19693 * 8 7 5 10 10 C 1.34767 * 125.64841 * 181.01720 * 9 8 7 11 11 O 1.21596 * 120.00037 * 174.86125 * 10 9 8 12 12 C 1.47540 * 120.00277 * 354.86696 * 10 9 8 13 13 C 1.39670 * 120.19261 * 314.83709 * 12 10 9 14 14 C 1.37824 * 119.91742 * 180.02562 * 13 12 10 15 15 C 1.38577 * 120.32330 * 0.02706 * 14 13 12 16 16 C 1.38029 * 120.40150 * 359.69701 * 15 14 13 17 17 C 1.38827 * 120.06811 * 0.55462 * 16 15 14 18 18 O 1.35518 * 120.15948 * 179.74365 * 17 16 15 19 19 C 1.34821 * 117.00153 * 5.21277 * 18 17 16 20 20 H 1.08005 * 119.99453 * 354.90671 * 19 18 17 21 21 C 1.38692 * 120.00560 * 174.91425 * 19 18 17 22 22 N 1.31520 * 119.99911 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00284 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47436 * 59.99463 * 23 21 19 25 25 H 1.48504 * 109.46787 * 299.99415 * 23 21 19 26 26 H 1.48496 * 109.47042 * 180.02562 * 23 21 19 27 27 C 1.47429 * 108.70165 * 1.28151 * 9 8 7 28 28 H 1.09004 * 109.47220 * 59.99397 * 1 2 3 29 29 H 1.08995 * 109.47522 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47215 * 300.00097 * 1 2 3 31 31 H 1.09005 * 109.47108 * 239.99977 * 2 1 3 32 32 H 1.08997 * 109.47409 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.47350 * 300.00524 * 3 2 1 34 34 H 1.09005 * 109.46933 * 59.99869 * 3 2 1 35 35 H 1.08991 * 109.47111 * 305.00127 * 4 2 1 36 36 H 1.09000 * 109.46937 * 184.99448 * 4 2 1 37 37 H 1.09003 * 110.71677 * 88.02212 * 7 5 4 38 38 H 1.09000 * 110.71818 * 324.75201 * 7 5 4 39 39 H 1.09000 * 109.88635 * 262.77503 * 8 7 5 40 40 H 1.09002 * 109.87833 * 141.60840 * 8 7 5 41 41 H 1.07998 * 120.04064 * 0.05260 * 13 12 10 42 42 H 1.07999 * 119.83794 * 179.97438 * 14 13 12 43 43 H 1.08000 * 119.79923 * 179.97438 * 15 14 13 44 44 H 1.07998 * 119.96354 * 180.30304 * 16 15 14 45 45 H 0.97009 * 120.00231 * 0.02562 * 22 21 19 46 46 H 1.09003 * 110.36386 * 94.48210 * 27 9 8 47 47 H 1.08996 * 110.36942 * 216.80685 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6352 -2.1955 1.1879 6 1 0.5692 -2.2977 0.9846 7 6 2.0253 -2.9343 2.4953 8 6 2.1952 -4.3956 2.0291 9 7 2.4533 -4.3649 0.5820 10 6 2.6385 -5.4425 -0.2058 11 8 2.7525 -5.3041 -1.4084 12 6 2.7029 -6.7903 0.3910 13 6 3.4675 -7.0149 1.5380 14 6 3.5240 -8.2763 2.0904 15 6 2.8260 -9.3249 1.5129 16 6 2.0618 -9.1167 0.3825 17 6 1.9973 -7.8539 -0.1906 18 8 1.2517 -7.6486 -1.3035 19 6 0.5104 -8.6852 -1.7435 20 1 0.5912 -9.6491 -1.2631 21 6 -0.3559 -8.5138 -2.8130 22 7 -0.4546 -7.3399 -3.3977 23 14 -1.3835 -9.9499 -3.4221 24 1 -2.2596 -10.4324 -2.3245 25 1 -0.4867 -11.0498 -3.8595 26 1 -2.2203 -9.5094 -4.5669 27 6 2.4822 -2.9598 0.1367 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6053 -0.2619 2.1369 36 1 3.1263 -0.6445 1.2951 37 1 1.2286 -2.8557 3.2350 38 1 2.9624 -2.5449 2.8933 39 1 1.2834 -4.9576 2.2312 40 1 3.0381 -4.8540 2.5463 41 1 4.0133 -6.2009 1.9918 42 1 4.1159 -8.4486 2.9772 43 1 2.8766 -10.3100 1.9526 44 1 1.5167 -9.9380 -0.0589 45 1 0.0788 -6.5940 -3.0812 46 1 3.5061 -2.5860 0.1268 47 1 2.0337 -2.8659 -0.8523 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174584620.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:13 Heat of formation + Delta-G solvation = -77.689566 kcal Electronic energy + Delta-G solvation = -26946.915474 eV Core-core repulsion = 23286.626881 eV Total energy + Delta-G solvation = -3660.288592 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.62193 -40.48471 -38.94737 -38.20819 -36.85967 -34.38562 -33.29611 -31.82764 -30.67439 -30.27705 -28.04463 -27.40966 -26.92689 -25.02310 -23.52575 -23.27618 -21.74744 -20.91972 -20.47627 -20.29418 -18.86518 -17.99996 -17.54077 -16.91300 -16.73919 -16.05866 -15.90285 -15.68541 -15.49576 -15.36344 -15.12997 -15.00991 -14.84297 -14.50709 -14.16702 -13.85914 -13.67266 -13.29411 -13.09704 -13.04355 -13.01642 -12.85097 -12.54402 -12.48982 -12.45355 -12.35480 -12.09635 -11.96762 -11.85252 -11.54336 -11.41536 -11.32427 -11.21049 -10.89763 -10.83060 -9.98142 -9.66826 -9.18472 -9.01206 -6.31549 0.09803 0.60430 1.43744 1.58296 1.68236 1.75060 2.01771 2.31927 2.78354 3.07550 3.20872 3.35905 3.61652 3.73375 3.80492 3.96337 4.06902 4.10497 4.18016 4.24119 4.26454 4.38985 4.45703 4.49707 4.56287 4.60363 4.72719 4.78696 4.80499 4.87142 4.88068 4.94415 4.97824 5.01616 5.04561 5.10763 5.13206 5.16320 5.26913 5.33030 5.41596 5.43154 5.50486 5.51618 5.57741 5.60434 5.95664 6.16769 6.42295 6.80229 7.14022 7.56901 8.41536 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012149 B = 0.003881 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.238669 B = 7213.067826 C = 8998.858799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.106 4.106 3 C -0.142 4.142 4 C -0.090 4.090 5 C -0.096 4.096 6 H 0.072 0.928 7 C -0.111 4.111 8 C 0.091 3.909 9 N -0.619 5.619 10 C 0.574 3.426 11 O -0.591 6.591 12 C -0.232 4.232 13 C -0.035 4.035 14 C -0.188 4.188 15 C -0.043 4.043 16 C -0.249 4.249 17 C 0.149 3.851 18 O -0.232 6.232 19 C -0.495 4.495 20 H 0.099 0.901 21 C -0.046 4.046 22 N -0.911 5.911 23 Si 1.149 2.851 24 H -0.253 1.253 25 H -0.257 1.257 26 H -0.275 1.275 27 C 0.106 3.894 28 H 0.048 0.952 29 H 0.039 0.961 30 H 0.070 0.930 31 H 0.047 0.953 32 H 0.058 0.942 33 H 0.049 0.951 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.053 0.947 40 H 0.093 0.907 41 H 0.156 0.844 42 H 0.169 0.831 43 H 0.158 0.842 44 H 0.124 0.876 45 H 0.255 0.745 46 H 0.078 0.922 47 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.910 10.439 18.794 22.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.124 4.124 3 C -0.199 4.199 4 C -0.128 4.128 5 C -0.115 4.115 6 H 0.091 0.909 7 C -0.149 4.149 8 C -0.031 4.031 9 N -0.353 5.353 10 C 0.365 3.635 11 O -0.471 6.471 12 C -0.236 4.236 13 C -0.053 4.053 14 C -0.206 4.206 15 C -0.061 4.061 16 C -0.269 4.269 17 C 0.096 3.904 18 O -0.138 6.138 19 C -0.570 4.570 20 H 0.117 0.883 21 C -0.242 4.242 22 N -0.544 5.544 23 Si 0.963 3.037 24 H -0.177 1.177 25 H -0.182 1.182 26 H -0.200 1.200 27 C -0.016 4.016 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.110 0.890 36 H 0.096 0.904 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.072 0.928 40 H 0.111 0.889 41 H 0.173 0.827 42 H 0.187 0.813 43 H 0.176 0.824 44 H 0.142 0.858 45 H 0.064 0.936 46 H 0.097 0.903 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 4.808 10.232 16.833 20.277 hybrid contribution 0.946 0.372 0.062 1.019 sum 5.755 10.603 16.895 20.761 Atomic orbital electron populations 1.21893 0.95562 1.01049 1.02167 1.21178 0.95847 0.97105 0.98305 1.21789 1.01134 0.94809 1.02151 1.21541 1.01707 0.91225 0.98325 1.22481 0.99061 0.95738 0.94207 0.90926 1.22747 1.04545 0.90927 0.96666 1.22445 1.01691 1.00111 0.78805 1.48430 1.70878 1.05492 1.10502 1.18253 0.75272 0.84814 0.85123 1.90750 1.52467 1.86902 1.17021 1.19145 1.10764 0.91171 1.02566 1.21274 0.94393 0.99121 0.90553 1.21222 1.04401 0.91643 1.03331 1.21458 0.91860 1.00735 0.92064 1.21317 1.07884 0.95848 1.01808 1.19834 0.90625 0.94175 0.85730 1.83746 1.52609 1.40410 1.37010 1.22757 1.23528 0.91045 1.19665 0.88329 1.28637 0.97690 1.05099 0.92819 1.70658 1.40038 1.02261 1.41446 0.82591 0.74664 0.69439 0.77019 1.17731 1.18172 1.19973 1.22476 1.00677 0.80145 0.98339 0.93256 0.94161 0.91079 0.93415 0.92259 0.93142 0.91407 0.89038 0.90427 0.87733 0.87696 0.92813 0.88871 0.82677 0.81345 0.82400 0.85835 0.93643 0.90343 0.94524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 8.97 71.98 0.65 -2.21 16 2 C -0.11 -1.93 2.87 -10.80 -0.03 -1.96 16 3 C -0.14 -2.03 9.19 71.98 0.66 -1.37 16 4 C -0.09 -1.37 4.19 30.59 0.13 -1.24 16 5 C -0.10 -2.01 2.90 -9.32 -0.03 -2.04 16 6 H 0.07 1.78 6.31 -2.39 -0.02 1.76 16 7 C -0.11 -1.78 6.42 31.78 0.20 -1.57 16 8 C 0.09 2.23 5.92 86.73 0.51 2.75 16 9 N -0.62 -22.31 3.32 -815.08 -2.71 -25.02 16 10 C 0.57 27.80 7.16 86.70 0.62 28.43 16 11 O -0.59 -35.57 16.60 8.03 0.13 -35.44 16 12 C -0.23 -10.51 5.39 -19.99 -0.11 -10.62 16 13 C -0.04 -1.13 8.43 22.52 0.19 -0.94 16 14 C -0.19 -5.08 10.02 22.25 0.22 -4.85 16 15 C -0.04 -1.36 10.03 22.30 0.22 -1.13 16 16 C -0.25 -10.90 9.16 22.36 0.20 -10.70 16 17 C 0.15 7.89 6.63 22.90 0.15 8.04 16 18 O -0.23 -15.04 8.09 -8.06 -0.07 -15.11 16 19 C -0.49 -30.59 9.49 67.93 0.64 -29.95 16 20 H 0.10 5.52 5.20 -2.91 -0.02 5.50 16 21 C -0.05 -2.81 5.49 84.85 0.47 -2.34 16 22 N -0.91 -61.86 13.70 21.62 0.30 -61.56 16 23 Si 1.15 50.22 29.92 68.60 2.05 52.27 16 24 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 25 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 26 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 27 C 0.11 3.26 5.84 86.93 0.51 3.77 16 28 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 29 H 0.04 0.91 6.42 -2.39 -0.02 0.90 16 30 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.05 1.10 7.55 -2.38 -0.02 1.08 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 34 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 35 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.08 1.03 7.96 -2.39 -0.02 1.01 16 37 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.10 1.15 8.04 -2.39 -0.02 1.13 16 39 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.09 1.82 5.76 -2.39 -0.01 1.81 16 41 H 0.16 3.73 6.19 -2.91 -0.02 3.71 16 42 H 0.17 2.88 8.06 -2.91 -0.02 2.85 16 43 H 0.16 3.57 8.06 -2.91 -0.02 3.55 16 44 H 0.12 5.51 5.63 -2.91 -0.02 5.50 16 45 H 0.26 18.81 7.97 -92.70 -0.74 18.07 16 46 H 0.08 2.14 7.91 -2.39 -0.02 2.12 16 47 H 0.04 1.40 7.89 -2.39 -0.02 1.38 16 Total: -1.00 -90.18 375.14 5.92 -84.26 By element: Atomic # 1 Polarization: 27.55 SS G_CDS: 0.99 Total: 28.54 kcal Atomic # 6 Polarization: -33.16 SS G_CDS: 5.22 Total: -27.94 kcal Atomic # 7 Polarization: -84.17 SS G_CDS: -2.41 Total: -86.59 kcal Atomic # 8 Polarization: -50.62 SS G_CDS: 0.07 Total: -50.55 kcal Atomic # 14 Polarization: 50.22 SS G_CDS: 2.05 Total: 52.27 kcal Total: -90.18 5.92 -84.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174584620.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.571 kcal (2) G-P(sol) polarization free energy of solvation -90.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds