Wall clock time and date at job start Tue Mar 31 2020 11:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47325 * 2 1 4 4 C 1.52997 * 109.47074 * 239.99574 * 2 1 3 5 5 C 1.53003 * 109.46788 * 120.00081 * 2 1 3 6 6 N 1.46490 * 109.47559 * 48.37727 * 5 2 1 7 7 C 1.46501 * 120.00198 * 272.93289 * 6 5 2 8 8 C 1.50699 * 109.47098 * 274.49627 * 7 6 5 9 9 H 1.07996 * 120.00125 * 0.02562 * 8 7 6 10 10 C 1.37873 * 120.00038 * 179.97438 * 8 7 6 11 11 N 1.31516 * 120.00101 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 119.99936 * 180.02562 * 10 8 7 13 13 H 1.48488 * 109.47048 * 60.00197 * 12 10 8 14 14 H 1.48499 * 109.46858 * 180.02562 * 12 10 8 15 15 H 1.48494 * 109.46985 * 299.99962 * 12 10 8 16 16 S 1.65602 * 120.00332 * 92.92990 * 6 5 2 17 17 O 1.42098 * 104.28119 * 122.94730 * 16 6 5 18 18 O 1.42102 * 104.27642 * 355.08578 * 16 6 5 19 19 C 1.81400 * 104.44981 * 239.01968 * 16 6 5 20 20 C 1.53002 * 109.47097 * 171.11674 * 19 16 6 21 21 C 1.54958 * 110.92465 * 71.54026 * 20 19 16 22 22 C 1.54261 * 104.16309 * 156.29509 * 21 20 19 23 23 C 1.53871 * 106.63995 * 336.44326 * 22 21 20 24 24 C 1.54266 * 106.59824 * 359.97438 * 23 22 21 25 25 H 1.09006 * 109.46992 * 302.01982 * 1 2 3 26 26 H 1.08996 * 109.46874 * 62.01323 * 1 2 3 27 27 H 1.08993 * 109.47491 * 182.01810 * 1 2 3 28 28 H 1.09002 * 109.47073 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47069 * 299.99722 * 3 2 1 30 30 H 1.08999 * 109.47438 * 60.00429 * 3 2 1 31 31 H 1.08993 * 109.47332 * 293.31326 * 4 2 1 32 32 H 1.09004 * 109.47054 * 53.31451 * 4 2 1 33 33 H 1.09001 * 109.47035 * 173.30890 * 4 2 1 34 34 H 1.09001 * 109.47041 * 288.37440 * 5 2 1 35 35 H 1.09006 * 109.47004 * 168.37558 * 5 2 1 36 36 H 1.09004 * 109.46978 * 34.49677 * 7 6 5 37 37 H 1.08999 * 109.47255 * 154.49056 * 7 6 5 38 38 H 0.97001 * 119.99951 * 179.97438 * 11 10 8 39 39 H 1.09005 * 109.47604 * 51.12144 * 19 16 6 40 40 H 1.08997 * 109.47118 * 291.11841 * 19 16 6 41 41 H 1.09001 * 110.67217 * 308.23528 * 20 19 16 42 42 H 1.09003 * 110.47780 * 37.64081 * 21 20 19 43 43 H 1.09004 * 110.53215 * 274.97874 * 21 20 19 44 44 H 1.09003 * 110.03281 * 217.13986 * 22 21 20 45 45 H 1.08995 * 110.03337 * 95.75855 * 22 21 20 46 46 H 1.09008 * 110.03142 * 119.26106 * 23 22 21 47 47 H 1.08999 * 110.03826 * 240.64187 * 23 22 21 48 48 H 1.09002 * 110.49072 * 142.28833 * 24 23 22 49 49 H 1.09006 * 110.48167 * 264.79444 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0399 -0.7213 1.2493 6 7 1.3378 -1.9985 1.3966 7 6 0.0597 -2.0537 2.1106 8 6 0.3158 -2.2015 3.5883 9 1 1.3292 -2.2490 3.9586 10 6 -0.7436 -2.2749 4.4676 11 7 -1.9777 -2.2165 4.0167 12 14 -0.4262 -2.4573 6.2994 13 1 0.3617 -1.2955 6.7833 14 1 -1.7217 -2.5135 7.0230 15 1 0.3336 -3.7088 6.5478 16 16 1.9887 -3.3800 0.7561 17 8 2.1039 -4.2603 1.8656 18 8 3.1398 -2.9320 0.0536 19 6 0.7286 -3.9787 -0.4033 20 6 1.3011 -5.1340 -1.2269 21 6 1.4625 -6.4067 -0.3577 22 6 1.4387 -7.5650 -1.3762 23 6 0.6960 -7.0437 -2.6189 24 6 0.2933 -5.5864 -2.3127 25 1 -0.3633 0.5449 0.8714 26 1 -0.3633 0.4822 -0.9075 27 1 -0.3634 -1.0269 0.0362 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.7777 -1.7776 -1.1913 32 1 1.5822 -0.2813 -2.1352 33 1 3.1234 -0.6188 -1.3111 34 1 1.8556 -0.1019 2.1271 35 1 3.1101 -0.9042 1.1519 36 1 -0.4981 -1.1351 1.9285 37 1 -0.5186 -2.9065 1.7549 38 1 -2.7230 -2.2685 4.6353 39 1 0.4338 -3.1684 -1.0701 40 1 -0.1418 -4.3258 0.1535 41 1 2.2528 -4.8512 -1.6769 42 1 0.6325 -6.4977 0.3430 43 1 2.4129 -6.3873 0.1758 44 1 0.9094 -8.4204 -0.9565 45 1 2.4567 -7.8497 -1.6417 46 1 1.3540 -7.0747 -3.4875 47 1 -0.1932 -7.6467 -2.8029 48 1 0.3908 -4.9680 -3.2050 49 1 -0.7267 -5.5448 -1.9305 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178333336.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:24 Heat of formation + Delta-G solvation = -98.745480 kcal Electronic energy + Delta-G solvation = -27270.764519 eV Core-core repulsion = 23745.006825 eV Total energy + Delta-G solvation = -3525.757694 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -38.31887 -38.06165 -36.36572 -35.19794 -34.05823 -32.15756 -31.61642 -28.73592 -27.75339 -27.04567 -26.71078 -25.63278 -24.64622 -22.19008 -20.37128 -20.22676 -18.82377 -17.91547 -16.94399 -16.57160 -16.19903 -15.65311 -15.35975 -14.87073 -14.62514 -14.23008 -14.13583 -13.72864 -13.64440 -13.32932 -13.02929 -12.58741 -12.37810 -12.24923 -12.08348 -11.80091 -11.61741 -11.50728 -11.35354 -11.30395 -11.21086 -11.17259 -11.11165 -11.05833 -10.91284 -10.77109 -10.72479 -10.66308 -10.47246 -10.45974 -10.29282 -10.10413 -9.96688 -9.82626 -9.57353 -8.42314 -7.92600 -6.05591 -4.08018 0.91318 3.35388 3.38366 3.40547 3.46581 4.29135 4.41746 4.46091 4.50381 4.67452 4.83200 5.11069 5.17791 5.19269 5.20645 5.29010 5.31191 5.36938 5.46171 5.56498 5.60992 5.65864 5.74641 5.82991 5.86269 5.87382 5.90156 5.93271 5.98763 6.02421 6.11414 6.18194 6.19262 6.24979 6.28615 6.33063 6.35805 6.49824 6.54795 6.59323 6.69919 6.85847 7.18726 7.39953 7.62802 7.94430 8.23111 8.97318 9.57192 11.02472 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010521 B = 0.005955 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2660.752656 B = 4700.553021 C = 6354.355981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.093 4.093 3 C -0.136 4.136 4 C -0.136 4.136 5 C 0.141 3.859 6 N -0.984 5.984 7 C 0.246 3.754 8 C -0.522 4.522 9 H 0.064 0.936 10 C 0.060 3.940 11 N -0.900 5.900 12 Si 0.895 3.105 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.275 1.275 16 S 2.602 3.398 17 O -0.945 6.945 18 O -0.976 6.976 19 C -0.631 4.631 20 C -0.081 4.081 21 C -0.141 4.141 22 C -0.122 4.122 23 C -0.126 4.126 24 C -0.111 4.111 25 H 0.061 0.939 26 H 0.042 0.958 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.042 0.958 32 H 0.047 0.953 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.050 0.950 37 H 0.025 0.975 38 H 0.263 0.737 39 H 0.130 0.870 40 H 0.135 0.865 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.066 0.934 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.064 0.936 48 H 0.067 0.933 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.213 -1.703 -13.784 14.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.095 4.095 3 C -0.194 4.194 4 C -0.193 4.193 5 C 0.015 3.985 6 N -0.822 5.822 7 C 0.124 3.876 8 C -0.561 4.561 9 H 0.082 0.918 10 C -0.141 4.141 11 N -0.540 5.540 12 Si 0.722 3.278 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.200 1.200 16 S 2.695 3.305 17 O -0.935 6.935 18 O -0.967 6.967 19 C -0.759 4.759 20 C -0.100 4.100 21 C -0.179 4.179 22 C -0.160 4.160 23 C -0.164 4.164 24 C -0.150 4.150 25 H 0.080 0.920 26 H 0.061 0.939 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.068 0.932 37 H 0.043 0.957 38 H 0.073 0.927 39 H 0.148 0.852 40 H 0.153 0.847 41 H 0.106 0.894 42 H 0.099 0.901 43 H 0.091 0.909 44 H 0.085 0.915 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.083 0.917 48 H 0.086 0.914 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.844 -2.088 -13.487 14.482 hybrid contribution -0.768 -0.022 0.778 1.094 sum 4.076 -2.110 -12.709 13.512 Atomic orbital electron populations 1.22000 0.94144 1.02613 1.00876 1.21073 0.96560 0.95524 0.96299 1.21783 1.00714 0.95287 1.01572 1.21963 1.01520 0.99294 0.96503 1.21186 0.95460 0.84923 0.96941 1.57314 1.35736 1.20897 1.68283 1.19293 0.78422 0.98525 0.91368 1.21543 0.93381 1.49581 0.91601 0.91802 1.24923 0.94945 0.95155 0.99108 1.69905 0.98050 1.50911 1.35148 0.86601 0.77288 0.78984 0.84879 1.20214 1.21348 1.20002 1.05143 0.75387 0.74452 0.75495 1.93610 1.85224 1.66495 1.48176 1.93512 1.46729 1.80493 1.75935 1.30764 1.20200 1.08600 1.16296 1.21834 0.99459 0.92720 0.96028 1.22742 1.03425 0.93832 0.97861 1.22099 1.00560 0.98007 0.95329 1.22151 1.00097 0.96151 0.97952 1.22374 0.99083 0.95691 0.97815 0.92015 0.93922 0.91733 0.92788 0.92958 0.92456 0.93903 0.93384 0.91886 0.89809 0.90849 0.93201 0.95672 0.92746 0.85176 0.84704 0.89390 0.90078 0.90922 0.91543 0.91731 0.91841 0.91740 0.91438 0.90954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 6.97 37.16 0.26 -1.87 16 2 C -0.09 -1.38 0.86 -154.51 -0.13 -1.51 16 3 C -0.14 -1.70 8.44 37.16 0.31 -1.39 16 4 C -0.14 -1.93 7.37 37.16 0.27 -1.65 16 5 C 0.14 2.51 4.68 -4.05 -0.02 2.50 16 6 N -0.98 -19.75 2.05 -115.66 -0.24 -19.99 16 7 C 0.25 5.77 3.97 -5.19 -0.02 5.75 16 8 C -0.52 -14.25 9.38 -34.44 -0.32 -14.57 16 9 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 10 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 11 N -0.90 -25.46 13.29 55.43 0.74 -24.72 16 12 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 14 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 16 S 2.60 50.05 4.13 -107.50 -0.44 49.60 16 17 O -0.95 -22.06 17.68 -57.54 -1.02 -23.08 16 18 O -0.98 -18.87 14.16 -57.54 -0.81 -19.69 16 19 C -0.63 -9.56 4.81 37.16 0.18 -9.38 16 20 C -0.08 -1.08 2.86 -88.59 -0.25 -1.33 16 21 C -0.14 -1.94 5.75 -25.04 -0.14 -2.08 16 22 C -0.12 -1.33 6.80 -25.62 -0.17 -1.50 16 23 C -0.13 -1.24 6.80 -25.61 -0.17 -1.42 16 24 C -0.11 -1.23 6.27 -25.07 -0.16 -1.39 16 25 H 0.06 1.01 7.50 -51.93 -0.39 0.62 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 1.05 5.93 -51.93 -0.31 0.74 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.04 0.63 3.69 -51.93 -0.19 0.44 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.08 1.53 8.05 -51.93 -0.42 1.11 16 35 H 0.07 1.28 7.04 -51.93 -0.37 0.91 16 36 H 0.05 1.17 5.50 -51.93 -0.29 0.89 16 37 H 0.03 0.61 6.93 -51.93 -0.36 0.25 16 38 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.13 1.72 6.79 -51.92 -0.35 1.37 16 40 H 0.13 2.08 7.33 -51.93 -0.38 1.70 16 41 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.08 1.17 7.95 -51.93 -0.41 0.75 16 43 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.06 0.56 8.14 -51.92 -0.42 0.13 16 47 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.07 0.80 8.05 -51.93 -0.42 0.39 16 LS Contribution 379.32 15.07 5.72 5.72 Total: -1.00 -31.16 379.32 -10.48 -41.64 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -8.92 Total: 2.10 kcal Atomic # 6 Polarization: -27.81 SS G_CDS: -0.47 Total: -28.28 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: 0.50 Total: -44.71 kcal Atomic # 8 Polarization: -40.94 SS G_CDS: -1.83 Total: -42.77 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: 50.05 SS G_CDS: -0.44 Total: 49.60 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.16 -10.48 -41.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178333336.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.108 kcal (2) G-P(sol) polarization free energy of solvation -31.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds