Wall clock time and date at job start Tue Mar 31 2020 11:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47325 * 2 1 4 4 C 1.52997 * 109.47074 * 239.99574 * 2 1 3 5 5 C 1.53003 * 109.46788 * 120.00081 * 2 1 3 6 6 N 1.46490 * 109.47559 * 48.37727 * 5 2 1 7 7 C 1.46501 * 120.00198 * 272.93289 * 6 5 2 8 8 C 1.50699 * 109.47098 * 274.49627 * 7 6 5 9 9 H 1.07996 * 120.00125 * 0.02562 * 8 7 6 10 10 C 1.37873 * 120.00038 * 179.97438 * 8 7 6 11 11 N 1.31516 * 120.00101 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 119.99936 * 180.02562 * 10 8 7 13 13 H 1.48488 * 109.47048 * 60.00197 * 12 10 8 14 14 H 1.48499 * 109.46858 * 180.02562 * 12 10 8 15 15 H 1.48494 * 109.46985 * 299.99962 * 12 10 8 16 16 S 1.65602 * 120.00332 * 92.92990 * 6 5 2 17 17 O 1.42098 * 104.28119 * 122.94730 * 16 6 5 18 18 O 1.42102 * 104.27642 * 355.08578 * 16 6 5 19 19 C 1.81400 * 104.44981 * 239.01968 * 16 6 5 20 20 C 1.53002 * 109.47097 * 171.11674 * 19 16 6 21 21 C 1.54958 * 110.92465 * 71.54026 * 20 19 16 22 22 C 1.54261 * 104.16309 * 156.29509 * 21 20 19 23 23 C 1.53871 * 106.63995 * 336.44326 * 22 21 20 24 24 C 1.54266 * 106.59824 * 359.97438 * 23 22 21 25 25 H 1.09006 * 109.46992 * 302.01982 * 1 2 3 26 26 H 1.08996 * 109.46874 * 62.01323 * 1 2 3 27 27 H 1.08993 * 109.47491 * 182.01810 * 1 2 3 28 28 H 1.09002 * 109.47073 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47069 * 299.99722 * 3 2 1 30 30 H 1.08999 * 109.47438 * 60.00429 * 3 2 1 31 31 H 1.08993 * 109.47332 * 293.31326 * 4 2 1 32 32 H 1.09004 * 109.47054 * 53.31451 * 4 2 1 33 33 H 1.09001 * 109.47035 * 173.30890 * 4 2 1 34 34 H 1.09001 * 109.47041 * 288.37440 * 5 2 1 35 35 H 1.09006 * 109.47004 * 168.37558 * 5 2 1 36 36 H 1.09004 * 109.46978 * 34.49677 * 7 6 5 37 37 H 1.08999 * 109.47255 * 154.49056 * 7 6 5 38 38 H 0.97001 * 119.99951 * 179.97438 * 11 10 8 39 39 H 1.09005 * 109.47604 * 51.12144 * 19 16 6 40 40 H 1.08997 * 109.47118 * 291.11841 * 19 16 6 41 41 H 1.09001 * 110.67217 * 308.23528 * 20 19 16 42 42 H 1.09003 * 110.47780 * 37.64081 * 21 20 19 43 43 H 1.09004 * 110.53215 * 274.97874 * 21 20 19 44 44 H 1.09003 * 110.03281 * 217.13986 * 22 21 20 45 45 H 1.08995 * 110.03337 * 95.75855 * 22 21 20 46 46 H 1.09008 * 110.03142 * 119.26106 * 23 22 21 47 47 H 1.08999 * 110.03826 * 240.64187 * 23 22 21 48 48 H 1.09002 * 110.49072 * 142.28833 * 24 23 22 49 49 H 1.09006 * 110.48167 * 264.79444 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0399 -0.7213 1.2493 6 7 1.3378 -1.9985 1.3966 7 6 0.0597 -2.0537 2.1106 8 6 0.3158 -2.2015 3.5883 9 1 1.3292 -2.2490 3.9586 10 6 -0.7436 -2.2749 4.4676 11 7 -1.9777 -2.2165 4.0167 12 14 -0.4262 -2.4573 6.2994 13 1 0.3617 -1.2955 6.7833 14 1 -1.7217 -2.5135 7.0230 15 1 0.3336 -3.7088 6.5478 16 16 1.9887 -3.3800 0.7561 17 8 2.1039 -4.2603 1.8656 18 8 3.1398 -2.9320 0.0536 19 6 0.7286 -3.9787 -0.4033 20 6 1.3011 -5.1340 -1.2269 21 6 1.4625 -6.4067 -0.3577 22 6 1.4387 -7.5650 -1.3762 23 6 0.6960 -7.0437 -2.6189 24 6 0.2933 -5.5864 -2.3127 25 1 -0.3633 0.5449 0.8714 26 1 -0.3633 0.4822 -0.9075 27 1 -0.3634 -1.0269 0.0362 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.7777 -1.7776 -1.1913 32 1 1.5822 -0.2813 -2.1352 33 1 3.1234 -0.6188 -1.3111 34 1 1.8556 -0.1019 2.1271 35 1 3.1101 -0.9042 1.1519 36 1 -0.4981 -1.1351 1.9285 37 1 -0.5186 -2.9065 1.7549 38 1 -2.7230 -2.2685 4.6353 39 1 0.4338 -3.1684 -1.0701 40 1 -0.1418 -4.3258 0.1535 41 1 2.2528 -4.8512 -1.6769 42 1 0.6325 -6.4977 0.3430 43 1 2.4129 -6.3873 0.1758 44 1 0.9094 -8.4204 -0.9565 45 1 2.4567 -7.8497 -1.6417 46 1 1.3540 -7.0747 -3.4875 47 1 -0.1932 -7.6467 -2.8029 48 1 0.3908 -4.9680 -3.2050 49 1 -0.7267 -5.5448 -1.9305 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178333336.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:23 Heat of formation + Delta-G solvation = -116.650750 kcal Electronic energy + Delta-G solvation = -27271.540950 eV Core-core repulsion = 23745.006825 eV Total energy + Delta-G solvation = -3526.534125 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.41879 -39.28744 -37.98492 -36.83326 -35.73191 -34.06517 -32.70839 -29.66260 -29.48094 -28.12797 -28.00525 -26.95236 -26.05282 -24.03878 -21.32750 -21.19942 -20.13539 -19.41453 -18.68119 -18.25316 -17.65163 -17.22002 -16.51958 -16.48270 -15.87109 -15.61982 -15.49942 -15.02042 -14.85505 -14.41655 -14.30224 -14.26098 -13.91868 -13.56854 -13.43063 -13.12826 -13.01309 -12.95624 -12.91228 -12.78661 -12.61921 -12.47416 -12.39905 -12.27712 -12.21878 -12.16468 -12.03639 -11.96265 -11.73128 -11.66203 -11.61486 -11.46015 -11.35320 -11.25367 -11.13267 -10.52923 -9.58935 -8.17254 -6.26098 -0.59422 1.38272 1.40972 1.48413 1.86862 2.42679 2.85751 3.12401 3.28314 3.39673 3.55729 3.69676 3.89283 3.98144 4.03513 4.12336 4.21091 4.32472 4.36875 4.50747 4.58871 4.60532 4.65209 4.69945 4.77930 4.81054 4.88322 4.89253 4.97399 5.00361 5.01857 5.08859 5.13966 5.16928 5.18477 5.25449 5.27994 5.33514 5.36778 5.40764 5.48159 5.52995 5.58082 5.66000 5.75675 6.00014 6.19240 6.82258 7.41524 8.88729 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010521 B = 0.005955 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2660.752656 B = 4700.553021 C = 6354.355981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.088 4.088 3 C -0.132 4.132 4 C -0.137 4.137 5 C 0.133 3.867 6 N -0.988 5.988 7 C 0.261 3.739 8 C -0.541 4.541 9 H 0.045 0.955 10 C 0.017 3.983 11 N -0.922 5.922 12 Si 0.945 3.055 13 H -0.269 1.269 14 H -0.275 1.275 15 H -0.282 1.282 16 S 2.593 3.407 17 O -0.999 6.999 18 O -0.981 6.981 19 C -0.605 4.605 20 C -0.087 4.087 21 C -0.154 4.154 22 C -0.121 4.121 23 C -0.123 4.123 24 C -0.108 4.108 25 H 0.043 0.957 26 H 0.068 0.932 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.033 0.967 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.050 0.950 37 H 0.018 0.982 38 H 0.266 0.734 39 H 0.157 0.843 40 H 0.132 0.868 41 H 0.095 0.905 42 H 0.066 0.934 43 H 0.055 0.945 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.079 0.921 47 H 0.077 0.923 48 H 0.087 0.913 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.815 -1.491 -16.138 16.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.090 4.090 3 C -0.190 4.190 4 C -0.194 4.194 5 C 0.007 3.993 6 N -0.826 5.826 7 C 0.137 3.863 8 C -0.581 4.581 9 H 0.063 0.937 10 C -0.182 4.182 11 N -0.562 5.562 12 Si 0.771 3.229 13 H -0.194 1.194 14 H -0.200 1.200 15 H -0.208 1.208 16 S 2.692 3.308 17 O -0.989 6.989 18 O -0.971 6.971 19 C -0.737 4.737 20 C -0.107 4.107 21 C -0.191 4.191 22 C -0.159 4.159 23 C -0.160 4.160 24 C -0.147 4.147 25 H 0.062 0.938 26 H 0.087 0.913 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.068 0.932 37 H 0.035 0.965 38 H 0.075 0.925 39 H 0.175 0.825 40 H 0.151 0.849 41 H 0.113 0.887 42 H 0.084 0.916 43 H 0.073 0.927 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.098 0.902 47 H 0.096 0.904 48 H 0.105 0.895 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.491 -1.839 -15.809 16.537 hybrid contribution -0.610 -0.114 1.476 1.601 sum 3.881 -1.953 -14.333 14.977 Atomic orbital electron populations 1.21959 0.94355 1.01766 1.01374 1.21027 0.96303 0.96672 0.94989 1.21764 1.01197 0.93605 1.02449 1.21977 1.01579 0.98847 0.96977 1.21372 0.95384 0.84233 0.98291 1.57182 1.34571 1.21941 1.68885 1.18937 0.79737 0.97925 0.89669 1.21847 0.92562 1.49626 0.94027 0.93716 1.25577 0.94909 0.95032 1.02721 1.69966 0.98478 1.51449 1.36301 0.85810 0.77596 0.78676 0.80845 1.19372 1.20028 1.20760 1.05143 0.76327 0.73690 0.75627 1.93545 1.86506 1.67532 1.51308 1.93496 1.47633 1.80401 1.75571 1.30514 1.17709 1.10192 1.15267 1.22007 1.00669 0.91544 0.96500 1.22827 1.01923 0.95827 0.98564 1.22126 1.01667 0.96999 0.95061 1.22170 1.00866 0.95260 0.97724 1.22407 0.98069 0.96824 0.97372 0.93763 0.91269 0.93105 0.92084 0.90844 0.92827 0.94766 0.90722 0.92131 0.91235 0.90987 0.93243 0.96451 0.92477 0.82536 0.84935 0.88657 0.91559 0.92656 0.90838 0.90729 0.90180 0.90381 0.89476 0.91017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.02 6.97 71.98 0.50 -3.52 16 2 C -0.09 -2.51 0.86 -52.18 -0.04 -2.56 16 3 C -0.13 -3.06 8.44 71.98 0.61 -2.46 16 4 C -0.14 -3.56 7.37 71.98 0.53 -3.03 16 5 C 0.13 4.81 4.68 86.38 0.40 5.21 16 6 N -0.99 -40.67 2.05 -519.85 -1.07 -41.74 16 7 C 0.26 12.59 3.97 85.63 0.34 12.93 16 8 C -0.54 -30.52 9.38 25.60 0.24 -30.28 16 9 H 0.04 2.63 7.81 -2.91 -0.02 2.61 16 10 C 0.02 0.95 5.46 84.65 0.46 1.41 16 11 N -0.92 -52.63 13.29 21.45 0.28 -52.34 16 12 Si 0.94 45.08 29.54 68.60 2.03 47.11 16 13 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 14 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 15 H -0.28 -13.68 7.11 99.48 0.71 -12.98 16 16 S 2.59 101.99 4.13 -56.49 -0.23 101.76 16 17 O -1.00 -49.00 17.68 -127.65 -2.26 -51.26 16 18 O -0.98 -38.09 14.16 -127.65 -1.81 -39.90 16 19 C -0.60 -17.87 4.81 71.98 0.35 -17.52 16 20 C -0.09 -2.21 2.86 -9.48 -0.03 -2.24 16 21 C -0.15 -4.21 5.75 31.69 0.18 -4.03 16 22 C -0.12 -2.42 6.80 31.32 0.21 -2.21 16 23 C -0.12 -2.03 6.80 31.32 0.21 -1.82 16 24 C -0.11 -2.07 6.27 31.67 0.20 -1.87 16 25 H 0.04 1.43 7.50 -2.38 -0.02 1.41 16 26 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.05 1.61 5.93 -2.39 -0.01 1.59 16 28 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.03 0.93 3.69 -2.39 -0.01 0.92 16 32 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 33 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.07 2.64 8.05 -2.39 -0.02 2.62 16 35 H 0.07 2.57 7.04 -2.38 -0.02 2.56 16 36 H 0.05 2.39 5.50 -2.38 -0.01 2.38 16 37 H 0.02 0.87 6.93 -2.39 -0.02 0.85 16 38 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 39 H 0.16 3.81 6.79 -2.39 -0.02 3.79 16 40 H 0.13 4.08 7.33 -2.39 -0.02 4.06 16 41 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.07 1.97 7.95 -2.39 -0.02 1.95 16 43 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 44 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 47 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 48 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 49 H 0.07 1.40 8.05 -2.38 -0.02 1.38 16 Total: -1.00 -68.32 379.32 2.01 -66.31 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: 0.90 Total: 22.06 kcal Atomic # 6 Polarization: -56.16 SS G_CDS: 4.17 Total: -51.99 kcal Atomic # 7 Polarization: -93.30 SS G_CDS: -0.78 Total: -94.08 kcal Atomic # 8 Polarization: -87.09 SS G_CDS: -4.06 Total: -91.16 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Atomic # 16 Polarization: 101.99 SS G_CDS: -0.23 Total: 101.76 kcal Total: -68.32 2.01 -66.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178333336.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.342 kcal (2) G-P(sol) polarization free energy of solvation -68.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds