Wall clock time and date at job start Tue Mar 31 2020 12:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47113 * 2 1 4 4 C 1.52994 * 109.47220 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.48517 * 55.02277 * 4 3 2 6 6 C 1.53098 * 109.48251 * 175.05881 * 4 3 2 7 7 C 1.53175 * 109.16251 * 177.58994 * 6 4 3 8 8 H 1.09001 * 109.54506 * 183.15259 * 7 6 4 9 9 C 1.50696 * 109.54425 * 62.88829 * 7 6 4 10 10 O 1.21282 * 119.99976 * 0.43804 * 9 7 6 11 11 N 1.34783 * 120.00281 * 180.44314 * 9 7 6 12 12 C 1.39232 * 120.00087 * 175.70751 * 11 9 7 13 13 C 1.39486 * 119.83042 * 215.02079 * 12 11 9 14 14 C 1.36378 * 120.16878 * 179.71552 * 13 12 11 15 15 C 1.40870 * 119.82488 * 0.55556 * 14 13 12 16 16 C 1.41153 * 120.16486 * 179.74149 * 15 14 13 17 17 H 1.08004 * 120.00102 * 214.75854 * 16 15 14 18 18 C 1.39907 * 119.99860 * 34.75605 * 16 15 14 19 19 N 1.30873 * 119.99780 * 355.57366 * 18 16 15 20 20 Si 1.86800 * 120.00005 * 175.57720 * 18 16 15 21 21 H 1.48499 * 109.47052 * 60.00062 * 20 18 16 22 22 H 1.48497 * 109.46892 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47035 * 300.00085 * 20 18 16 24 24 C 1.40869 * 119.67553 * 359.72236 * 15 14 13 25 25 C 1.36379 * 119.82754 * 359.97438 * 24 15 14 26 26 C 1.53172 * 109.04101 * 303.01888 * 7 6 4 27 27 C 1.53089 * 109.16425 * 56.97932 * 26 7 6 28 28 O 1.42903 * 109.47963 * 294.99880 * 4 3 2 29 29 H 1.09004 * 109.46925 * 299.99618 * 1 2 3 30 30 H 1.08997 * 109.47286 * 59.99794 * 1 2 3 31 31 H 1.09003 * 109.47068 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46925 * 240.00382 * 2 1 3 33 33 H 1.08997 * 109.47286 * 120.00206 * 2 1 3 34 34 H 1.09000 * 109.47165 * 59.99933 * 3 2 1 35 35 H 1.08997 * 109.47212 * 300.00251 * 3 2 1 36 36 H 1.08999 * 109.52200 * 57.68548 * 6 4 3 37 37 H 1.08999 * 109.52026 * 297.49395 * 6 4 3 38 38 H 0.97003 * 119.99903 * 355.70670 * 11 9 7 39 39 H 1.07997 * 119.91667 * 0.02562 * 13 12 11 40 40 H 1.07991 * 120.08808 * 180.27431 * 14 13 12 41 41 H 0.96996 * 119.99507 * 179.97438 * 19 18 16 42 42 H 1.07997 * 120.08893 * 179.97438 * 24 15 14 43 43 H 1.07996 * 119.91751 * 180.02562 * 25 24 15 44 44 H 1.08999 * 109.52778 * 176.88847 * 26 7 6 45 45 H 1.09008 * 109.52393 * 297.08120 * 26 7 6 46 46 H 1.09002 * 109.47915 * 62.37295 * 27 26 7 47 47 H 1.09001 * 109.48704 * 182.40269 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9332 0.8536 -0.8428 6 6 4.0805 2.8805 -0.1250 7 6 5.6111 2.8776 -0.0643 8 1 5.9792 3.9031 -0.0960 9 6 6.1606 2.1065 -1.2366 10 8 5.4043 1.6142 -2.0468 11 7 7.4927 1.9637 -1.3846 12 6 7.9982 1.1771 -2.4162 13 6 9.1601 0.4320 -2.2151 14 6 9.6580 -0.3454 -3.2189 15 6 9.0023 -0.3855 -4.4651 16 6 9.5145 -1.1833 -5.5108 17 1 9.4301 -0.8508 -6.5349 18 6 10.1315 -2.4050 -5.2206 19 7 10.3116 -2.7678 -3.9761 20 14 10.6985 -3.5181 -6.6094 21 1 11.6969 -2.8008 -7.4425 22 1 11.3159 -4.7433 -6.0412 23 1 9.5329 -3.8953 -7.4487 24 6 7.8326 0.3744 -4.6624 25 6 7.3432 1.1422 -3.6471 26 6 6.0582 2.2129 1.2412 27 6 5.4713 0.8008 1.3129 28 8 4.0470 0.8730 1.2201 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8899 36 1 3.6846 3.4797 0.6949 37 1 3.7545 3.3018 -1.0759 38 1 8.0992 2.4091 -0.7724 39 1 9.6638 0.4668 -1.2605 40 1 10.5552 -0.9252 -3.0604 41 1 10.7391 -3.6150 -3.7750 42 1 7.3248 0.3489 -5.6152 43 1 6.4463 1.7250 -3.7967 44 1 7.1464 2.1569 1.2675 45 1 5.7021 2.7987 2.0888 46 1 5.8595 0.2036 0.4878 47 1 5.7511 0.3384 2.2595 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182637058.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:40 Heat of formation + Delta-G solvation = -84.627348 kcal Electronic energy + Delta-G solvation = -26865.030354 eV Core-core repulsion = 23204.440916 eV Total energy + Delta-G solvation = -3660.589437 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.64299 -38.65254 -37.13752 -35.06784 -34.47908 -33.70418 -32.82302 -31.18948 -29.60134 -28.90206 -27.35743 -25.57837 -24.25584 -22.92104 -22.01886 -21.24665 -20.96531 -20.40007 -19.03809 -17.34732 -16.73874 -16.43222 -16.29874 -16.06175 -15.21076 -15.03981 -14.66492 -14.42285 -14.16410 -13.92436 -13.75802 -13.21029 -12.99528 -12.80205 -12.74829 -12.36366 -12.28506 -12.12726 -11.96020 -11.70784 -11.57253 -11.37129 -11.35984 -11.14675 -11.03226 -10.93736 -10.74503 -10.66570 -10.62108 -10.24437 -9.97806 -9.53216 -9.47080 -9.35903 -9.03079 -8.77191 -7.56915 -6.88319 -6.63284 -4.36009 2.52498 3.01096 3.06923 3.08525 3.11064 3.30624 3.67643 3.85580 3.96921 4.50783 4.67865 4.71445 4.72927 4.84576 5.04990 5.07564 5.15925 5.28704 5.35248 5.49282 5.53350 5.61168 5.63092 5.66874 5.72474 5.77946 5.87726 5.91023 5.91546 5.98657 6.10854 6.16621 6.19411 6.31732 6.38966 6.44670 6.74269 6.89850 7.05173 7.19091 7.27954 7.34432 7.61758 7.72510 7.85071 8.04310 8.24033 8.29794 8.60313 8.72660 8.91117 8.98288 10.27716 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016368 B = 0.003054 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.196889 B = 9166.922244 C = 9913.641752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.106 4.106 4 C 0.077 3.923 5 H 0.089 0.911 6 C -0.125 4.125 7 C -0.112 4.112 8 H 0.097 0.903 9 C 0.501 3.499 10 O -0.527 6.527 11 N -0.650 5.650 12 C 0.003 3.997 13 C -0.121 4.121 14 C -0.142 4.142 15 C 0.100 3.900 16 C -0.461 4.461 17 H 0.075 0.925 18 C 0.070 3.930 19 N -0.812 5.812 20 Si 0.916 3.084 21 H -0.266 1.266 22 H -0.279 1.279 23 H -0.266 1.266 24 C -0.206 4.206 25 C -0.085 4.085 26 C -0.145 4.145 27 C 0.059 3.941 28 O -0.381 6.381 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.394 0.606 39 H 0.090 0.910 40 H 0.132 0.868 41 H 0.278 0.722 42 H 0.095 0.905 43 H 0.107 0.893 44 H 0.077 0.923 45 H 0.080 0.920 46 H 0.053 0.947 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.147 8.607 11.025 16.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.144 4.144 4 C 0.020 3.980 5 H 0.106 0.894 6 C -0.163 4.163 7 C -0.133 4.133 8 H 0.115 0.885 9 C 0.288 3.712 10 O -0.404 6.404 11 N -0.293 5.293 12 C -0.090 4.090 13 C -0.141 4.141 14 C -0.162 4.162 15 C 0.098 3.902 16 C -0.492 4.492 17 H 0.093 0.907 18 C -0.145 4.145 19 N -0.439 5.439 20 Si 0.741 3.259 21 H -0.191 1.191 22 H -0.204 1.204 23 H -0.191 1.191 24 C -0.226 4.226 25 C -0.105 4.105 26 C -0.183 4.183 27 C -0.018 4.018 28 O -0.300 6.300 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.228 0.772 39 H 0.108 0.892 40 H 0.150 0.850 41 H 0.089 0.911 42 H 0.113 0.887 43 H 0.125 0.875 44 H 0.095 0.905 45 H 0.098 0.902 46 H 0.072 0.928 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.727 7.985 10.739 16.544 hybrid contribution 0.871 -0.227 -0.381 0.977 sum -8.856 7.758 10.358 15.681 Atomic orbital electron populations 1.21777 0.96223 1.01402 1.01420 1.21481 0.95211 0.96767 1.02670 1.21581 0.93073 0.97602 1.02130 1.22443 0.94227 0.93310 0.88001 0.89376 1.21958 0.92958 0.98512 1.02904 1.21411 0.97594 1.00435 0.93895 0.88519 1.20501 0.82579 0.81362 0.86755 1.90637 1.57385 1.48469 1.43911 1.43037 1.06300 1.48767 1.31153 1.17272 1.00127 1.03242 0.88316 1.20311 0.96785 0.98539 0.98480 1.21192 1.01528 0.99589 0.93846 1.17717 0.89428 0.89860 0.93205 1.19471 1.32704 1.02504 0.94545 0.90662 1.25877 0.93456 0.98688 0.96504 1.69751 1.33694 1.21491 1.18964 0.86247 0.79526 0.79000 0.81163 1.19054 1.20421 1.19084 1.20808 0.98314 1.05094 0.98385 1.20386 0.98936 0.99659 0.91505 1.22172 1.01412 0.98039 0.96629 1.22530 0.81580 0.95337 1.02354 1.87857 1.20359 1.82601 1.39170 0.92997 0.92940 0.92929 0.91960 0.91380 0.91721 0.90791 0.90933 0.90241 0.77229 0.89174 0.85049 0.91084 0.88651 0.87523 0.90462 0.90153 0.92822 0.88851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 37.16 0.37 -1.08 16 2 C -0.12 -1.45 5.83 -26.73 -0.16 -1.60 16 3 C -0.11 -1.24 4.92 -26.74 -0.13 -1.37 16 4 C 0.08 1.06 2.35 -26.68 -0.06 1.00 16 5 H 0.09 1.52 5.82 -51.93 -0.30 1.21 16 6 C -0.13 -1.51 4.56 -26.59 -0.12 -1.63 16 7 C -0.11 -1.34 3.04 -91.59 -0.28 -1.61 16 8 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 9 C 0.50 8.26 5.65 -10.98 -0.06 8.20 16 10 O -0.53 -10.66 11.27 5.56 0.06 -10.60 16 11 N -0.65 -10.94 5.15 -9.74 -0.05 -10.99 16 12 C 0.00 0.06 6.31 -83.57 -0.53 -0.47 16 13 C -0.12 -2.71 9.90 -39.79 -0.39 -3.11 16 14 C -0.14 -3.61 8.61 -39.26 -0.34 -3.95 16 15 C 0.10 2.68 5.55 -106.80 -0.59 2.09 16 16 C -0.46 -12.29 9.02 -37.85 -0.34 -12.63 16 17 H 0.08 1.92 7.85 -52.48 -0.41 1.51 16 18 C 0.07 1.76 5.42 -17.34 -0.09 1.67 16 19 N -0.81 -21.06 10.59 55.55 0.59 -20.47 16 20 Si 0.92 18.99 29.56 -169.99 -5.03 13.97 16 21 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 22 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 23 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 24 C -0.21 -5.20 9.74 -39.26 -0.38 -5.58 16 25 C -0.08 -2.01 8.61 -39.79 -0.34 -2.35 16 26 C -0.14 -1.51 5.57 -26.60 -0.15 -1.66 16 27 C 0.06 0.75 6.62 37.20 0.25 1.00 16 28 O -0.38 -5.36 9.94 -35.23 -0.35 -5.71 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.84 7.82 -51.93 -0.41 0.44 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.99 8.02 -51.93 -0.42 0.57 16 38 H 0.39 5.21 8.34 -40.82 -0.34 4.87 16 39 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 40 H 0.13 3.46 6.13 -52.49 -0.32 3.14 16 41 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 42 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 43 H 0.11 2.49 6.22 -52.49 -0.33 2.16 16 44 H 0.08 0.71 7.60 -51.93 -0.39 0.32 16 45 H 0.08 0.72 8.14 -51.92 -0.42 0.29 16 46 H 0.05 0.83 7.38 -51.93 -0.38 0.45 16 47 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 370.47 15.07 5.58 5.58 Total: -1.00 -29.54 370.47 -10.06 -39.61 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -7.51 Total: 11.69 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: -3.36 Total: -23.08 kcal Atomic # 7 Polarization: -32.00 SS G_CDS: 0.54 Total: -31.46 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -0.29 Total: -16.31 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.97 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.54 -10.06 -39.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182637058.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.022 kcal (2) G-P(sol) polarization free energy of solvation -29.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds