Wall clock time and date at job start Tue Mar 31 2020 12:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47113 * 2 1 4 4 C 1.52994 * 109.47220 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.48517 * 55.02277 * 4 3 2 6 6 C 1.53098 * 109.48251 * 175.05881 * 4 3 2 7 7 C 1.53175 * 109.16251 * 177.58994 * 6 4 3 8 8 H 1.09001 * 109.54506 * 183.15259 * 7 6 4 9 9 C 1.50696 * 109.54425 * 62.88829 * 7 6 4 10 10 O 1.21282 * 119.99976 * 0.43804 * 9 7 6 11 11 N 1.34783 * 120.00281 * 180.44314 * 9 7 6 12 12 C 1.39232 * 120.00087 * 175.70751 * 11 9 7 13 13 C 1.39486 * 119.83042 * 215.02079 * 12 11 9 14 14 C 1.36378 * 120.16878 * 179.71552 * 13 12 11 15 15 C 1.40870 * 119.82488 * 0.55556 * 14 13 12 16 16 C 1.41153 * 120.16486 * 179.74149 * 15 14 13 17 17 H 1.08004 * 120.00102 * 214.75854 * 16 15 14 18 18 C 1.39907 * 119.99860 * 34.75605 * 16 15 14 19 19 N 1.30873 * 119.99780 * 355.57366 * 18 16 15 20 20 Si 1.86800 * 120.00005 * 175.57720 * 18 16 15 21 21 H 1.48499 * 109.47052 * 60.00062 * 20 18 16 22 22 H 1.48497 * 109.46892 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47035 * 300.00085 * 20 18 16 24 24 C 1.40869 * 119.67553 * 359.72236 * 15 14 13 25 25 C 1.36379 * 119.82754 * 359.97438 * 24 15 14 26 26 C 1.53172 * 109.04101 * 303.01888 * 7 6 4 27 27 C 1.53089 * 109.16425 * 56.97932 * 26 7 6 28 28 O 1.42903 * 109.47963 * 294.99880 * 4 3 2 29 29 H 1.09004 * 109.46925 * 299.99618 * 1 2 3 30 30 H 1.08997 * 109.47286 * 59.99794 * 1 2 3 31 31 H 1.09003 * 109.47068 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46925 * 240.00382 * 2 1 3 33 33 H 1.08997 * 109.47286 * 120.00206 * 2 1 3 34 34 H 1.09000 * 109.47165 * 59.99933 * 3 2 1 35 35 H 1.08997 * 109.47212 * 300.00251 * 3 2 1 36 36 H 1.08999 * 109.52200 * 57.68548 * 6 4 3 37 37 H 1.08999 * 109.52026 * 297.49395 * 6 4 3 38 38 H 0.97003 * 119.99903 * 355.70670 * 11 9 7 39 39 H 1.07997 * 119.91667 * 0.02562 * 13 12 11 40 40 H 1.07991 * 120.08808 * 180.27431 * 14 13 12 41 41 H 0.96996 * 119.99507 * 179.97438 * 19 18 16 42 42 H 1.07997 * 120.08893 * 179.97438 * 24 15 14 43 43 H 1.07996 * 119.91751 * 180.02562 * 25 24 15 44 44 H 1.08999 * 109.52778 * 176.88847 * 26 7 6 45 45 H 1.09008 * 109.52393 * 297.08120 * 26 7 6 46 46 H 1.09002 * 109.47915 * 62.37295 * 27 26 7 47 47 H 1.09001 * 109.48704 * 182.40269 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9332 0.8536 -0.8428 6 6 4.0805 2.8805 -0.1250 7 6 5.6111 2.8776 -0.0643 8 1 5.9792 3.9031 -0.0960 9 6 6.1606 2.1065 -1.2366 10 8 5.4043 1.6142 -2.0468 11 7 7.4927 1.9637 -1.3846 12 6 7.9982 1.1771 -2.4162 13 6 9.1601 0.4320 -2.2151 14 6 9.6580 -0.3454 -3.2189 15 6 9.0023 -0.3855 -4.4651 16 6 9.5145 -1.1833 -5.5108 17 1 9.4301 -0.8508 -6.5349 18 6 10.1315 -2.4050 -5.2206 19 7 10.3116 -2.7678 -3.9761 20 14 10.6985 -3.5181 -6.6094 21 1 11.6969 -2.8008 -7.4425 22 1 11.3159 -4.7433 -6.0412 23 1 9.5329 -3.8953 -7.4487 24 6 7.8326 0.3744 -4.6624 25 6 7.3432 1.1422 -3.6471 26 6 6.0582 2.2129 1.2412 27 6 5.4713 0.8008 1.3129 28 8 4.0470 0.8730 1.2201 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8899 36 1 3.6846 3.4797 0.6949 37 1 3.7545 3.3018 -1.0759 38 1 8.0992 2.4091 -0.7724 39 1 9.6638 0.4668 -1.2605 40 1 10.5552 -0.9252 -3.0604 41 1 10.7391 -3.6150 -3.7750 42 1 7.3248 0.3489 -5.6152 43 1 6.4463 1.7250 -3.7967 44 1 7.1464 2.1569 1.2675 45 1 5.7021 2.7987 2.0888 46 1 5.8595 0.2036 0.4878 47 1 5.7511 0.3384 2.2595 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182637058.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:39 Heat of formation + Delta-G solvation = -100.806155 kcal Electronic energy + Delta-G solvation = -26865.731919 eV Core-core repulsion = 23204.440916 eV Total energy + Delta-G solvation = -3661.291003 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.89119 -40.05182 -38.78011 -36.21980 -35.96247 -34.94190 -34.40487 -32.15234 -31.48317 -30.73318 -28.31225 -27.15470 -25.55064 -23.97406 -23.42447 -22.94746 -22.02758 -21.93470 -20.38079 -19.26692 -18.22004 -17.65937 -17.44675 -17.16256 -17.02215 -16.23213 -15.77840 -15.73465 -15.44986 -15.36816 -14.85985 -14.80023 -14.53286 -14.03160 -13.93059 -13.71704 -13.58833 -13.48708 -13.28805 -13.18246 -12.89777 -12.79818 -12.75734 -12.49476 -12.42881 -12.24872 -11.87014 -11.81004 -11.61997 -11.55060 -11.42195 -11.25909 -11.19853 -10.78559 -10.53847 -10.15038 -9.48182 -8.73636 -8.51844 -6.34736 0.78770 1.11976 1.37951 1.45235 1.49883 1.78641 2.22360 2.34396 2.79278 2.85717 3.52543 3.65943 3.72131 3.79714 3.90292 4.06764 4.14162 4.24230 4.33691 4.37569 4.43420 4.51887 4.52503 4.68616 4.72357 4.79421 4.84370 4.86097 4.91716 4.95938 5.01428 5.05650 5.08363 5.12732 5.13777 5.21141 5.28635 5.34309 5.37492 5.43118 5.46683 5.67928 5.89864 6.01503 6.12722 6.31176 6.37922 6.65674 6.72964 6.95155 6.98686 7.40487 8.40577 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016368 B = 0.003054 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.196889 B = 9166.922244 C = 9913.641752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.124 4.124 3 C -0.103 4.103 4 C 0.075 3.925 5 H 0.044 0.956 6 C -0.123 4.123 7 C -0.103 4.103 8 H 0.135 0.865 9 C 0.498 3.502 10 O -0.567 6.567 11 N -0.644 5.644 12 C 0.024 3.976 13 C -0.120 4.120 14 C -0.159 4.159 15 C 0.067 3.933 16 C -0.500 4.500 17 H 0.072 0.928 18 C 0.028 3.972 19 N -0.841 5.841 20 Si 0.988 3.012 21 H -0.257 1.257 22 H -0.267 1.267 23 H -0.266 1.266 24 C -0.222 4.222 25 C -0.097 4.097 26 C -0.137 4.137 27 C 0.052 3.948 28 O -0.389 6.389 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.039 0.961 33 H 0.057 0.943 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.103 0.897 37 H 0.072 0.928 38 H 0.416 0.584 39 H 0.125 0.875 40 H 0.119 0.881 41 H 0.285 0.715 42 H 0.093 0.907 43 H 0.107 0.893 44 H 0.095 0.905 45 H 0.111 0.889 46 H 0.014 0.986 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.485 10.267 13.306 19.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.162 4.162 3 C -0.140 4.140 4 C 0.018 3.982 5 H 0.062 0.938 6 C -0.161 4.161 7 C -0.124 4.124 8 H 0.152 0.848 9 C 0.287 3.713 10 O -0.446 6.446 11 N -0.289 5.289 12 C -0.070 4.070 13 C -0.140 4.140 14 C -0.180 4.180 15 C 0.065 3.935 16 C -0.531 4.531 17 H 0.090 0.910 18 C -0.184 4.184 19 N -0.469 5.469 20 Si 0.809 3.191 21 H -0.182 1.182 22 H -0.192 1.192 23 H -0.191 1.191 24 C -0.242 4.242 25 C -0.117 4.117 26 C -0.174 4.174 27 C -0.025 4.025 28 O -0.309 6.309 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.121 0.879 37 H 0.090 0.910 38 H 0.254 0.746 39 H 0.143 0.857 40 H 0.136 0.864 41 H 0.095 0.905 42 H 0.111 0.889 43 H 0.125 0.875 44 H 0.113 0.887 45 H 0.129 0.871 46 H 0.033 0.967 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.062 9.683 13.059 19.119 hybrid contribution 0.868 -0.676 -0.973 1.469 sum -9.193 9.007 12.086 17.656 Atomic orbital electron populations 1.21740 0.94295 1.01985 1.02315 1.21464 0.96920 0.96787 1.01036 1.21583 0.91736 0.97517 1.03165 1.22379 0.95469 0.93910 0.86469 0.93812 1.21974 0.93066 0.97328 1.03746 1.21501 0.97346 1.01518 0.92064 0.84777 1.21482 0.81801 0.80544 0.87426 1.90642 1.58293 1.49905 1.45796 1.42978 1.07200 1.48367 1.30354 1.17318 0.98929 1.02062 0.88690 1.20568 0.96953 0.97354 0.99092 1.21182 1.01580 1.00676 0.94519 1.18020 0.90348 0.90915 0.94231 1.19701 1.34869 1.03986 0.94504 0.91019 1.26729 0.93012 0.99510 0.99137 1.69818 1.34234 1.22184 1.20677 0.85168 0.79025 0.77118 0.77838 1.18167 1.19177 1.19083 1.20928 0.98454 1.05824 0.99026 1.20501 0.99176 0.99831 0.92215 1.22198 1.02453 0.96260 0.96522 1.22672 0.81089 0.96923 1.01817 1.87847 1.21160 1.82959 1.38896 0.91660 0.92414 0.92586 0.94231 0.92417 0.89952 0.90241 0.87875 0.90950 0.74627 0.85745 0.86360 0.90480 0.88860 0.87472 0.88655 0.87084 0.96717 0.86842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.91 71.98 0.71 -1.92 16 2 C -0.12 -2.92 5.83 30.59 0.18 -2.74 16 3 C -0.10 -2.28 4.92 30.59 0.15 -2.13 16 4 C 0.08 2.01 2.35 30.63 0.07 2.08 16 5 H 0.04 1.58 5.82 -2.39 -0.01 1.56 16 6 C -0.12 -2.63 4.56 30.69 0.14 -2.49 16 7 C -0.10 -2.11 3.04 -11.43 -0.03 -2.14 16 8 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 9 C 0.50 15.74 5.65 87.65 0.50 16.23 16 10 O -0.57 -23.27 11.27 -3.03 -0.03 -23.30 16 11 N -0.64 -20.47 5.15 -303.11 -1.56 -22.03 16 12 C 0.02 1.02 6.31 38.57 0.24 1.26 16 13 C -0.12 -5.33 9.90 22.14 0.22 -5.11 16 14 C -0.16 -8.37 8.61 22.48 0.19 -8.18 16 15 C 0.07 3.75 5.55 -21.28 -0.12 3.63 16 16 C -0.50 -27.86 9.02 23.39 0.21 -27.64 16 17 H 0.07 3.86 7.85 -2.91 -0.02 3.84 16 18 C 0.03 1.45 5.42 85.24 0.46 1.91 16 19 N -0.84 -44.85 10.59 21.82 0.23 -44.62 16 20 Si 0.99 39.61 29.56 68.60 2.03 41.63 16 21 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 22 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 23 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 24 C -0.22 -11.75 9.74 22.48 0.22 -11.54 16 25 C -0.10 -4.71 8.61 22.14 0.19 -4.52 16 26 C -0.14 -2.30 5.57 30.68 0.17 -2.12 16 27 C 0.05 1.23 6.62 72.01 0.48 1.71 16 28 O -0.39 -10.46 9.94 -148.98 -1.48 -11.94 16 29 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.04 1.07 8.14 -2.38 -0.02 1.06 16 33 H 0.06 1.45 7.82 -2.39 -0.02 1.43 16 34 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.07 1.66 8.02 -2.39 -0.02 1.64 16 38 H 0.42 9.58 8.34 -92.71 -0.77 8.81 16 39 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 40 H 0.12 6.47 6.13 -2.92 -0.02 6.45 16 41 H 0.28 13.82 8.30 -92.71 -0.77 13.05 16 42 H 0.09 4.78 8.06 -2.91 -0.02 4.75 16 43 H 0.11 5.14 6.22 -2.91 -0.02 5.12 16 44 H 0.09 1.30 7.60 -2.39 -0.02 1.28 16 45 H 0.11 1.32 8.14 -2.38 -0.02 1.31 16 46 H 0.01 0.45 7.38 -2.39 -0.02 0.44 16 47 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -68.80 370.47 3.36 -65.44 By element: Atomic # 1 Polarization: 38.33 SS G_CDS: 0.19 Total: 38.52 kcal Atomic # 6 Polarization: -47.69 SS G_CDS: 3.98 Total: -43.70 kcal Atomic # 7 Polarization: -65.32 SS G_CDS: -1.33 Total: -66.65 kcal Atomic # 8 Polarization: -33.73 SS G_CDS: -1.52 Total: -35.24 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 2.03 Total: 41.63 kcal Total: -68.80 3.36 -65.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182637058.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.361 kcal (2) G-P(sol) polarization free energy of solvation -68.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds