Wall clock time and date at job start Tue Mar 31 2020 12:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46998 * 2 1 4 4 C 1.53001 * 109.46662 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.48148 * 304.97212 * 4 3 2 6 6 C 1.53091 * 109.48953 * 184.95073 * 4 3 2 7 7 C 1.53182 * 109.16641 * 182.40545 * 6 4 3 8 8 H 1.08998 * 109.54515 * 176.84211 * 7 6 4 9 9 C 1.50700 * 109.60977 * 297.06654 * 7 6 4 10 10 O 1.21279 * 120.00404 * 359.77213 * 9 7 6 11 11 N 1.34785 * 119.99473 * 179.77873 * 9 7 6 12 12 C 1.39234 * 119.99626 * 174.90404 * 11 9 7 13 13 C 1.39483 * 119.83600 * 325.33562 * 12 11 9 14 14 C 1.36373 * 120.17201 * 179.76509 * 13 12 11 15 15 C 1.40872 * 119.82494 * 0.50859 * 14 13 12 16 16 C 1.41152 * 120.16172 * 179.72203 * 15 14 13 17 17 H 1.08007 * 119.99979 * 205.36508 * 16 15 14 18 18 C 1.39900 * 120.00352 * 25.36181 * 16 15 14 19 19 N 1.30872 * 119.99928 * 16.83525 * 18 16 15 20 20 Si 1.86801 * 120.00216 * 196.83370 * 18 16 15 21 21 H 1.48499 * 109.46956 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47111 * 120.00152 * 20 18 16 23 23 H 1.48500 * 109.47111 * 240.00072 * 20 18 16 24 24 C 1.40867 * 119.67178 * 359.74593 * 15 14 13 25 25 C 1.36366 * 119.83108 * 359.97438 * 24 15 14 26 26 C 1.53180 * 109.03491 * 56.97362 * 7 6 4 27 27 C 1.53090 * 109.16604 * 303.02298 * 26 7 6 28 28 O 1.42899 * 109.41579 * 57.60630 * 27 26 7 29 29 H 1.09005 * 109.46913 * 300.00551 * 1 2 3 30 30 H 1.08994 * 109.46781 * 60.00035 * 1 2 3 31 31 H 1.08996 * 109.47370 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46868 * 239.99427 * 2 1 3 33 33 H 1.09005 * 109.46822 * 119.99462 * 2 1 3 34 34 H 1.08994 * 109.47260 * 60.00064 * 3 2 1 35 35 H 1.08997 * 109.47121 * 299.99150 * 3 2 1 36 36 H 1.08992 * 109.52526 * 62.49050 * 6 4 3 37 37 H 1.09005 * 109.51539 * 302.30387 * 6 4 3 38 38 H 0.96997 * 119.99963 * 354.89910 * 11 9 7 39 39 H 1.07998 * 119.91152 * 0.02562 * 13 12 11 40 40 H 1.07999 * 120.08819 * 180.25591 * 14 13 12 41 41 H 0.97003 * 119.99958 * 180.02562 * 19 18 16 42 42 H 1.08007 * 120.08312 * 179.97438 * 24 15 14 43 43 H 1.07999 * 119.92001 * 180.02562 * 25 24 15 44 44 H 1.08993 * 109.52372 * 62.92983 * 26 7 6 45 45 H 1.09003 * 109.51984 * 183.05197 * 26 7 6 46 46 H 1.08993 * 109.48333 * 177.59665 * 27 26 7 47 47 H 1.09007 * 109.47627 * 297.61575 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9332 0.8535 0.8430 6 6 4.0808 2.8802 0.1252 7 6 5.6114 2.8772 0.0646 8 1 5.9797 3.9026 0.0964 9 6 6.1625 2.1070 1.2369 10 8 5.4071 1.6116 2.0461 11 7 7.4949 1.9690 1.3861 12 6 8.0076 1.3500 2.5231 13 6 7.3661 1.5129 3.7509 14 6 7.8596 0.9060 4.8679 15 6 9.0265 0.1215 4.7815 16 6 9.5468 -0.5051 5.9343 17 1 10.5979 -0.7472 5.9896 18 6 8.7010 -0.8127 7.0054 19 7 7.4042 -0.8323 6.8304 20 14 9.4226 -1.1955 8.6853 21 1 10.9036 -1.1078 8.6196 22 1 8.9118 -0.2166 9.6782 23 1 9.0262 -2.5672 9.0935 24 6 9.6718 -0.0340 3.5390 25 6 9.1632 0.5745 2.4297 26 6 6.0584 2.2124 -1.2410 27 6 5.4713 0.8004 -1.3127 28 8 4.0472 0.8728 -1.2200 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6767 1.9563 0.8899 35 1 1.6768 1.9563 -0.8900 36 1 3.7547 3.3016 1.0760 37 1 3.6851 3.4796 -0.6948 38 1 8.0965 2.3007 0.7014 39 1 6.4738 2.1179 3.8162 40 1 7.3594 1.0297 5.8171 41 1 6.8177 -1.0452 7.5732 42 1 10.5671 -0.6336 3.4652 43 1 9.6565 0.4559 1.4763 44 1 5.7027 2.7982 -2.0884 45 1 7.1467 2.1572 -1.2676 46 1 5.7509 0.3380 -2.2593 47 1 5.8595 0.2030 -0.4877 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182637076.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:45 Heat of formation + Delta-G solvation = -85.890508 kcal Electronic energy + Delta-G solvation = -26870.622436 eV Core-core repulsion = 23209.978224 eV Total energy + Delta-G solvation = -3660.644212 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.60524 -38.62217 -37.12168 -35.05071 -34.49191 -33.67963 -32.86563 -31.17835 -29.53092 -28.99837 -27.34827 -25.56810 -24.25838 -22.91960 -21.95741 -21.31786 -20.94521 -20.38452 -18.96944 -17.34283 -16.77391 -16.42394 -16.28746 -16.06947 -15.21754 -15.00328 -14.61006 -14.37010 -14.17333 -13.94825 -13.73885 -13.20367 -12.99190 -12.80886 -12.76269 -12.36018 -12.29585 -12.10817 -11.87955 -11.77790 -11.59215 -11.48449 -11.34115 -11.15119 -10.94497 -10.92451 -10.66174 -10.60481 -10.53579 -10.23808 -9.95926 -9.77796 -9.51189 -9.35389 -9.00505 -8.63430 -7.54864 -7.02467 -6.74856 -4.30949 2.54602 2.97056 3.06437 3.08526 3.12479 3.34896 3.70135 3.85901 3.92605 4.52344 4.62760 4.72733 4.74828 4.84882 5.07077 5.09405 5.16956 5.30116 5.36532 5.50362 5.53149 5.62215 5.67634 5.68757 5.74042 5.79289 5.89718 5.91335 5.93553 6.00516 6.12396 6.12779 6.21669 6.33321 6.36310 6.42088 6.78988 6.97437 7.02791 7.13946 7.27328 7.34602 7.57176 7.65954 7.95089 8.03608 8.18853 8.30133 8.60964 8.76671 8.87040 8.99102 10.17931 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015717 B = 0.003178 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.066417 B = 8809.753968 C = 9992.790592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.107 4.107 4 C 0.077 3.923 5 H 0.089 0.911 6 C -0.126 4.126 7 C -0.112 4.112 8 H 0.097 0.903 9 C 0.500 3.500 10 O -0.524 6.524 11 N -0.651 5.651 12 C -0.007 4.007 13 C -0.085 4.085 14 C -0.155 4.155 15 C 0.106 3.894 16 C -0.459 4.459 17 H 0.078 0.922 18 C 0.074 3.926 19 N -0.788 5.788 20 Si 0.908 3.092 21 H -0.260 1.260 22 H -0.272 1.272 23 H -0.274 1.274 24 C -0.216 4.216 25 C -0.104 4.104 26 C -0.145 4.145 27 C 0.059 3.941 28 O -0.381 6.381 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.392 0.608 39 H 0.099 0.901 40 H 0.120 0.880 41 H 0.281 0.719 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.080 0.920 45 H 0.076 0.924 46 H 0.093 0.907 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.431 6.282 -13.635 16.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.144 4.144 4 C 0.020 3.980 5 H 0.107 0.893 6 C -0.164 4.164 7 C -0.133 4.133 8 H 0.115 0.885 9 C 0.286 3.714 10 O -0.400 6.400 11 N -0.294 5.294 12 C -0.099 4.099 13 C -0.105 4.105 14 C -0.175 4.175 15 C 0.103 3.897 16 C -0.488 4.488 17 H 0.096 0.904 18 C -0.144 4.144 19 N -0.413 5.413 20 Si 0.732 3.268 21 H -0.184 1.184 22 H -0.197 1.197 23 H -0.200 1.200 24 C -0.236 4.236 25 C -0.124 4.124 26 C -0.183 4.183 27 C -0.018 4.018 28 O -0.300 6.300 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.226 0.774 39 H 0.118 0.882 40 H 0.138 0.862 41 H 0.092 0.908 42 H 0.113 0.887 43 H 0.107 0.893 44 H 0.099 0.901 45 H 0.094 0.906 46 H 0.111 0.889 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.342 5.825 -13.068 16.081 hybrid contribution 0.853 0.100 0.591 1.043 sum -6.488 5.925 -12.477 15.261 Atomic orbital electron populations 1.21776 0.96226 1.01391 1.01435 1.21481 0.95222 0.96773 1.02641 1.21584 0.93052 0.97608 1.02155 1.22448 0.94244 0.93354 0.87918 0.89324 1.21959 0.92977 0.98478 1.02944 1.21420 0.97588 1.00462 0.93869 0.88478 1.20479 0.82629 0.81327 0.86944 1.90675 1.57284 1.47608 1.44448 1.43034 1.06292 1.58326 1.21719 1.17160 0.99925 1.07052 0.85742 1.20389 0.98558 1.00104 0.91420 1.20983 0.99389 0.99613 0.97499 1.17669 0.91077 0.89215 0.91711 1.19579 0.96189 1.34146 0.98889 0.90353 1.25942 0.94499 0.93173 1.00830 1.69865 1.04004 1.34466 1.32994 0.86267 0.80526 0.78590 0.81380 1.18406 1.19691 1.19978 1.20551 1.03591 1.06777 0.92646 1.20045 0.96695 0.98355 0.97346 1.22176 1.01273 0.98071 0.96793 1.22521 0.81718 0.95322 1.02217 1.87851 1.20268 1.82606 1.39262 0.92908 0.93014 0.92938 0.91423 0.91927 0.90739 0.91732 0.90191 0.90958 0.77427 0.88247 0.86247 0.90824 0.88663 0.89300 0.90147 0.90575 0.88901 0.92909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.91 37.16 0.37 -1.12 16 2 C -0.12 -1.47 5.83 -26.73 -0.16 -1.63 16 3 C -0.11 -1.27 4.92 -26.73 -0.13 -1.40 16 4 C 0.08 1.08 2.36 -26.68 -0.06 1.02 16 5 H 0.09 1.56 5.82 -51.93 -0.30 1.25 16 6 C -0.13 -1.56 4.56 -26.59 -0.12 -1.68 16 7 C -0.11 -1.37 3.05 -91.58 -0.28 -1.65 16 8 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 9 C 0.50 8.49 5.54 -10.98 -0.06 8.43 16 10 O -0.52 -11.09 11.60 5.56 0.06 -11.03 16 11 N -0.65 -11.14 5.22 -9.74 -0.05 -11.19 16 12 C -0.01 -0.15 6.27 -83.57 -0.52 -0.67 16 13 C -0.08 -2.09 8.57 -39.79 -0.34 -2.43 16 14 C -0.15 -4.13 8.63 -39.26 -0.34 -4.47 16 15 C 0.11 2.83 5.57 -106.80 -0.59 2.23 16 16 C -0.46 -12.14 9.04 -37.85 -0.34 -12.48 16 17 H 0.08 1.98 7.90 -52.48 -0.41 1.57 16 18 C 0.07 1.86 5.15 -17.34 -0.09 1.77 16 19 N -0.79 -20.78 10.95 55.55 0.61 -20.17 16 20 Si 0.91 18.68 29.59 -169.99 -5.03 13.65 16 21 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 22 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 23 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 24 C -0.22 -5.21 9.74 -39.26 -0.38 -5.59 16 25 C -0.10 -2.27 9.89 -39.79 -0.39 -2.66 16 26 C -0.15 -1.50 5.56 -26.59 -0.15 -1.65 16 27 C 0.06 0.74 6.62 37.20 0.25 0.98 16 28 O -0.38 -5.33 9.94 -35.23 -0.35 -5.68 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.84 7.82 -51.93 -0.41 0.43 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.08 1.04 8.02 -51.93 -0.42 0.63 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.39 5.22 8.07 -40.82 -0.33 4.89 16 39 H 0.10 2.45 6.48 -52.49 -0.34 2.11 16 40 H 0.12 3.31 6.18 -52.49 -0.32 2.99 16 41 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 42 H 0.10 2.14 8.06 -52.48 -0.42 1.72 16 43 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 44 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.08 0.67 7.40 -51.93 -0.38 0.29 16 46 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.05 0.79 7.38 -51.93 -0.38 0.41 16 LS Contribution 370.74 15.07 5.59 5.59 Total: -1.00 -30.03 370.74 -10.03 -40.06 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: -7.51 Total: 11.76 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: -3.35 Total: -22.99 kcal Atomic # 7 Polarization: -31.91 SS G_CDS: 0.56 Total: -31.36 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.29 Total: -16.71 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.65 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.03 -10.03 -40.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182637076.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.831 kcal (2) G-P(sol) polarization free energy of solvation -30.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds