Wall clock time and date at job start Tue Mar 31 2020 12:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46998 * 2 1 4 4 C 1.53001 * 109.46662 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.48148 * 304.97212 * 4 3 2 6 6 C 1.53091 * 109.48953 * 184.95073 * 4 3 2 7 7 C 1.53182 * 109.16641 * 182.40545 * 6 4 3 8 8 H 1.08998 * 109.54515 * 176.84211 * 7 6 4 9 9 C 1.50700 * 109.60977 * 297.06654 * 7 6 4 10 10 O 1.21279 * 120.00404 * 359.77213 * 9 7 6 11 11 N 1.34785 * 119.99473 * 179.77873 * 9 7 6 12 12 C 1.39234 * 119.99626 * 174.90404 * 11 9 7 13 13 C 1.39483 * 119.83600 * 325.33562 * 12 11 9 14 14 C 1.36373 * 120.17201 * 179.76509 * 13 12 11 15 15 C 1.40872 * 119.82494 * 0.50859 * 14 13 12 16 16 C 1.41152 * 120.16172 * 179.72203 * 15 14 13 17 17 H 1.08007 * 119.99979 * 205.36508 * 16 15 14 18 18 C 1.39900 * 120.00352 * 25.36181 * 16 15 14 19 19 N 1.30872 * 119.99928 * 16.83525 * 18 16 15 20 20 Si 1.86801 * 120.00216 * 196.83370 * 18 16 15 21 21 H 1.48499 * 109.46956 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47111 * 120.00152 * 20 18 16 23 23 H 1.48500 * 109.47111 * 240.00072 * 20 18 16 24 24 C 1.40867 * 119.67178 * 359.74593 * 15 14 13 25 25 C 1.36366 * 119.83108 * 359.97438 * 24 15 14 26 26 C 1.53180 * 109.03491 * 56.97362 * 7 6 4 27 27 C 1.53090 * 109.16604 * 303.02298 * 26 7 6 28 28 O 1.42899 * 109.41579 * 57.60630 * 27 26 7 29 29 H 1.09005 * 109.46913 * 300.00551 * 1 2 3 30 30 H 1.08994 * 109.46781 * 60.00035 * 1 2 3 31 31 H 1.08996 * 109.47370 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46868 * 239.99427 * 2 1 3 33 33 H 1.09005 * 109.46822 * 119.99462 * 2 1 3 34 34 H 1.08994 * 109.47260 * 60.00064 * 3 2 1 35 35 H 1.08997 * 109.47121 * 299.99150 * 3 2 1 36 36 H 1.08992 * 109.52526 * 62.49050 * 6 4 3 37 37 H 1.09005 * 109.51539 * 302.30387 * 6 4 3 38 38 H 0.96997 * 119.99963 * 354.89910 * 11 9 7 39 39 H 1.07998 * 119.91152 * 0.02562 * 13 12 11 40 40 H 1.07999 * 120.08819 * 180.25591 * 14 13 12 41 41 H 0.97003 * 119.99958 * 180.02562 * 19 18 16 42 42 H 1.08007 * 120.08312 * 179.97438 * 24 15 14 43 43 H 1.07999 * 119.92001 * 180.02562 * 25 24 15 44 44 H 1.08993 * 109.52372 * 62.92983 * 26 7 6 45 45 H 1.09003 * 109.51984 * 183.05197 * 26 7 6 46 46 H 1.08993 * 109.48333 * 177.59665 * 27 26 7 47 47 H 1.09007 * 109.47627 * 297.61575 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9332 0.8535 0.8430 6 6 4.0808 2.8802 0.1252 7 6 5.6114 2.8772 0.0646 8 1 5.9797 3.9026 0.0964 9 6 6.1625 2.1070 1.2369 10 8 5.4071 1.6116 2.0461 11 7 7.4949 1.9690 1.3861 12 6 8.0076 1.3500 2.5231 13 6 7.3661 1.5129 3.7509 14 6 7.8596 0.9060 4.8679 15 6 9.0265 0.1215 4.7815 16 6 9.5468 -0.5051 5.9343 17 1 10.5979 -0.7472 5.9896 18 6 8.7010 -0.8127 7.0054 19 7 7.4042 -0.8323 6.8304 20 14 9.4226 -1.1955 8.6853 21 1 10.9036 -1.1078 8.6196 22 1 8.9118 -0.2166 9.6782 23 1 9.0262 -2.5672 9.0935 24 6 9.6718 -0.0340 3.5390 25 6 9.1632 0.5745 2.4297 26 6 6.0584 2.2124 -1.2410 27 6 5.4713 0.8004 -1.3127 28 8 4.0472 0.8728 -1.2200 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6767 1.9563 0.8899 35 1 1.6768 1.9563 -0.8900 36 1 3.7547 3.3016 1.0760 37 1 3.6851 3.4796 -0.6948 38 1 8.0965 2.3007 0.7014 39 1 6.4738 2.1179 3.8162 40 1 7.3594 1.0297 5.8171 41 1 6.8177 -1.0452 7.5732 42 1 10.5671 -0.6336 3.4652 43 1 9.6565 0.4559 1.4763 44 1 5.7027 2.7982 -2.0884 45 1 7.1467 2.1572 -1.2676 46 1 5.7509 0.3380 -2.2593 47 1 5.8595 0.2030 -0.4877 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182637076.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:44 Heat of formation + Delta-G solvation = -102.860155 kcal Electronic energy + Delta-G solvation = -26871.358295 eV Core-core repulsion = 23209.978224 eV Total energy + Delta-G solvation = -3661.380071 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.87244 -40.03795 -38.77517 -36.25361 -35.97353 -34.94033 -34.43445 -32.15126 -31.44797 -30.80965 -28.31309 -27.16010 -25.55780 -23.96066 -23.33287 -23.12486 -21.97562 -21.94061 -20.35647 -19.26608 -18.27674 -17.63210 -17.44173 -17.23789 -16.97613 -16.18373 -15.80340 -15.69489 -15.46687 -15.40737 -14.86671 -14.78608 -14.55241 -14.01902 -13.92840 -13.80599 -13.59569 -13.53609 -13.26791 -13.21550 -12.86116 -12.82191 -12.68106 -12.45318 -12.32228 -12.25627 -11.88647 -11.75746 -11.69992 -11.60561 -11.55687 -11.24527 -11.23417 -10.77861 -10.46774 -10.14443 -9.47400 -8.87863 -8.62486 -6.28749 0.79688 1.11797 1.36601 1.41957 1.53035 1.81897 2.19388 2.35320 2.75026 2.85693 3.52899 3.71474 3.72920 3.79421 3.90129 4.06639 4.13575 4.24075 4.34025 4.40559 4.42082 4.45853 4.51748 4.68610 4.71460 4.78875 4.84281 4.85541 4.94482 4.95280 5.00823 5.05170 5.07480 5.10918 5.15933 5.22007 5.27825 5.29655 5.36542 5.43698 5.46243 5.65666 5.85331 6.06970 6.10079 6.31079 6.32696 6.65909 6.74628 6.91173 6.99481 7.44440 8.32319 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015717 B = 0.003178 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.066417 B = 8809.753968 C = 9992.790592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.124 4.124 3 C -0.104 4.104 4 C 0.077 3.923 5 H 0.043 0.957 6 C -0.124 4.124 7 C -0.104 4.104 8 H 0.132 0.868 9 C 0.496 3.504 10 O -0.570 6.570 11 N -0.643 5.643 12 C 0.011 3.989 13 C -0.099 4.099 14 C -0.180 4.180 15 C 0.073 3.927 16 C -0.494 4.494 17 H 0.081 0.919 18 C 0.029 3.971 19 N -0.830 5.830 20 Si 0.985 3.015 21 H -0.253 1.253 22 H -0.266 1.266 23 H -0.267 1.267 24 C -0.224 4.224 25 C -0.101 4.101 26 C -0.137 4.137 27 C 0.051 3.949 28 O -0.388 6.388 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.037 0.963 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.103 0.897 38 H 0.416 0.584 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.286 0.714 42 H 0.109 0.891 43 H 0.134 0.866 44 H 0.111 0.889 45 H 0.098 0.902 46 H 0.117 0.883 47 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.837 7.658 -16.377 18.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.161 4.161 3 C -0.141 4.141 4 C 0.020 3.980 5 H 0.061 0.939 6 C -0.162 4.162 7 C -0.125 4.125 8 H 0.149 0.851 9 C 0.285 3.715 10 O -0.449 6.449 11 N -0.289 5.289 12 C -0.083 4.083 13 C -0.119 4.119 14 C -0.200 4.200 15 C 0.070 3.930 16 C -0.523 4.523 17 H 0.100 0.900 18 C -0.185 4.185 19 N -0.456 5.456 20 Si 0.806 3.194 21 H -0.176 1.176 22 H -0.191 1.191 23 H -0.192 1.192 24 C -0.244 4.244 25 C -0.121 4.121 26 C -0.174 4.174 27 C -0.026 4.026 28 O -0.308 6.308 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.056 0.944 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.122 0.878 38 H 0.254 0.746 39 H 0.108 0.892 40 H 0.113 0.887 41 H 0.097 0.903 42 H 0.128 0.872 43 H 0.152 0.848 44 H 0.129 0.871 45 H 0.117 0.883 46 H 0.135 0.865 47 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -6.729 7.223 -15.863 18.684 hybrid contribution 0.604 -0.313 1.266 1.437 sum -6.125 6.911 -14.597 17.273 Atomic orbital electron populations 1.21741 0.94316 1.02022 1.02276 1.21460 0.96913 0.96692 1.01074 1.21586 0.91814 0.97611 1.03068 1.22334 0.95416 0.93790 0.86501 0.93949 1.21975 0.93273 0.97462 1.03516 1.21508 0.97214 1.01395 0.92352 0.85074 1.21489 0.81964 0.80405 0.87613 1.90684 1.58389 1.49297 1.46574 1.42956 1.07070 1.58025 1.20811 1.17233 0.99133 1.05626 0.86295 1.20428 0.98645 1.00403 0.92460 1.20876 1.00355 1.01401 0.97337 1.18005 0.91703 0.90030 0.93263 1.19846 0.96600 1.35706 1.00188 0.90042 1.26866 0.94589 0.92427 1.04611 1.69950 1.05504 1.35795 1.34394 0.85114 0.79833 0.78553 0.75920 1.17613 1.19109 1.19179 1.20838 1.03969 1.07052 0.92532 1.20418 0.96298 0.96868 0.98489 1.22208 1.02581 0.96372 0.96258 1.22704 0.81010 0.96824 1.02022 1.87840 1.21325 1.82883 1.38719 0.92610 0.91562 0.92488 0.92136 0.94366 0.90577 0.89825 0.91446 0.87816 0.74631 0.89176 0.88669 0.90336 0.87250 0.84848 0.87108 0.88346 0.86461 0.96500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 9.91 71.98 0.71 -2.03 16 2 C -0.12 -3.00 5.83 30.60 0.18 -2.82 16 3 C -0.10 -2.41 4.92 30.60 0.15 -2.26 16 4 C 0.08 2.14 2.36 30.62 0.07 2.21 16 5 H 0.04 1.58 5.82 -2.38 -0.01 1.57 16 6 C -0.12 -2.83 4.56 30.69 0.14 -2.69 16 7 C -0.10 -2.22 3.05 -11.42 -0.03 -2.26 16 8 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 9 C 0.50 16.41 5.54 87.66 0.49 16.90 16 10 O -0.57 -25.03 11.60 -3.03 -0.04 -25.07 16 11 N -0.64 -20.82 5.22 -303.10 -1.58 -22.40 16 12 C 0.01 0.46 6.27 38.57 0.24 0.70 16 13 C -0.10 -5.09 8.57 22.13 0.19 -4.91 16 14 C -0.18 -10.15 8.63 22.48 0.19 -9.96 16 15 C 0.07 4.03 5.57 -21.28 -0.12 3.91 16 16 C -0.49 -27.17 9.04 23.39 0.21 -26.96 16 17 H 0.08 4.24 7.90 -2.91 -0.02 4.22 16 18 C 0.03 1.53 5.15 85.24 0.44 1.97 16 19 N -0.83 -46.15 10.95 21.82 0.24 -45.91 16 20 Si 0.99 39.32 29.59 68.60 2.03 41.35 16 21 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16 22 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 23 H -0.27 -10.23 7.11 99.48 0.71 -9.53 16 24 C -0.22 -10.85 9.74 22.48 0.22 -10.63 16 25 C -0.10 -4.23 9.89 22.13 0.22 -4.02 16 26 C -0.14 -2.23 5.56 30.68 0.17 -2.06 16 27 C 0.05 1.16 6.62 72.01 0.48 1.64 16 28 O -0.39 -10.36 9.94 -148.98 -1.48 -11.84 16 29 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.06 1.52 7.82 -2.39 -0.02 1.50 16 33 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.07 1.71 8.02 -2.39 -0.02 1.69 16 37 H 0.10 1.75 8.14 -2.38 -0.02 1.74 16 38 H 0.42 9.52 8.07 -92.71 -0.75 8.77 16 39 H 0.09 4.70 6.48 -2.91 -0.02 4.68 16 40 H 0.10 5.72 6.18 -2.91 -0.02 5.70 16 41 H 0.29 14.44 8.30 -92.71 -0.77 13.67 16 42 H 0.11 4.87 8.06 -2.91 -0.02 4.85 16 43 H 0.13 4.39 8.06 -2.91 -0.02 4.36 16 44 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.10 1.21 7.40 -2.39 -0.02 1.19 16 46 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.02 0.50 7.38 -2.38 -0.02 0.48 16 Total: -1.00 -71.37 370.74 3.33 -68.04 By element: Atomic # 1 Polarization: 38.87 SS G_CDS: 0.22 Total: 39.09 kcal Atomic # 6 Polarization: -47.21 SS G_CDS: 3.95 Total: -43.26 kcal Atomic # 7 Polarization: -66.96 SS G_CDS: -1.34 Total: -68.31 kcal Atomic # 8 Polarization: -35.40 SS G_CDS: -1.52 Total: -36.91 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 2.03 Total: 41.35 kcal Total: -71.37 3.33 -68.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182637076.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.820 kcal (2) G-P(sol) polarization free energy of solvation -71.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds