Wall clock time and date at job start Tue Mar 31 2020 12:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46978 * 2 1 4 4 C 1.52994 * 109.46725 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.48456 * 304.97861 * 4 3 2 6 6 C 1.53100 * 109.49334 * 185.03782 * 4 3 2 7 7 C 1.53175 * 109.16329 * 182.49164 * 6 4 3 8 8 H 1.09006 * 109.54202 * 296.93811 * 7 6 4 9 9 C 1.50701 * 109.54749 * 176.75732 * 7 6 4 10 10 O 1.21280 * 120.00068 * 339.69477 * 9 7 6 11 11 N 1.34775 * 119.99821 * 159.41674 * 9 7 6 12 12 C 1.37142 * 120.00240 * 356.95698 * 11 9 7 13 13 H 1.07998 * 119.99940 * 324.76548 * 12 11 9 14 14 C 1.38889 * 120.00032 * 144.76006 * 12 11 9 15 15 N 1.31412 * 120.00293 * 159.78390 * 14 12 11 16 16 Si 1.86804 * 119.99973 * 339.78693 * 14 12 11 17 17 H 1.48495 * 109.47493 * 89.79599 * 16 14 12 18 18 H 1.48501 * 109.47218 * 209.79895 * 16 14 12 19 19 H 1.48502 * 109.47067 * 329.79720 * 16 14 12 20 20 C 1.39786 * 119.99728 * 176.95940 * 11 9 7 21 21 C 1.38962 * 120.08002 * 299.42258 * 20 11 9 22 22 C 1.38078 * 119.92381 * 179.79261 * 21 20 11 23 23 C 1.38307 * 120.08048 * 0.46334 * 22 21 20 24 24 C 1.38313 * 120.15238 * 359.78841 * 23 22 21 25 25 C 1.38078 * 120.07737 * 359.97438 * 24 23 22 26 26 C 1.53183 * 109.11130 * 56.84485 * 7 6 4 27 27 C 1.53090 * 109.15965 * 303.07043 * 26 7 6 28 28 O 1.42901 * 109.41775 * 57.60665 * 27 26 7 29 29 H 1.08995 * 109.47298 * 300.00092 * 1 2 3 30 30 H 1.09001 * 109.47239 * 60.00071 * 1 2 3 31 31 H 1.09001 * 109.47518 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46846 * 239.99887 * 2 1 3 33 33 H 1.09000 * 109.46854 * 120.00306 * 2 1 3 34 34 H 1.08995 * 109.47181 * 59.99837 * 3 2 1 35 35 H 1.09000 * 109.46855 * 299.99276 * 3 2 1 36 36 H 1.09005 * 109.60154 * 62.53824 * 6 4 3 37 37 H 1.09006 * 109.44968 * 302.34982 * 6 4 3 38 38 H 0.97003 * 120.00327 * 180.02562 * 15 14 12 39 39 H 1.08005 * 120.03306 * 359.97438 * 21 20 11 40 40 H 1.07998 * 119.96441 * 180.25147 * 22 21 20 41 41 H 1.07999 * 119.92485 * 179.76869 * 23 22 21 42 42 H 1.07996 * 119.96024 * 179.97438 * 24 23 22 43 43 H 1.07999 * 120.04117 * 179.97438 * 25 24 23 44 44 H 1.08999 * 109.51904 * 62.97017 * 26 7 6 45 45 H 1.08996 * 109.52308 * 183.10278 * 26 7 6 46 46 H 1.09006 * 109.47870 * 177.59341 * 27 26 7 47 47 H 1.09003 * 109.48123 * 297.61100 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 1 3.9338 0.8533 0.8411 6 6 4.0809 2.8801 0.1261 7 6 5.6113 2.8772 0.0621 8 1 6.0107 2.3199 0.9095 9 6 6.1205 4.2949 0.1060 10 8 5.3840 5.2131 -0.1862 11 7 7.3927 4.5429 0.4754 12 6 8.2052 3.5114 0.8712 13 1 7.7923 2.6798 1.4229 14 6 9.5592 3.5362 0.5626 15 7 10.4029 2.7971 1.2473 16 14 10.1810 4.6204 -0.8257 17 1 10.5281 5.9609 -0.2896 18 1 11.3869 4.0030 -1.4339 19 1 9.1221 4.7591 -1.8577 20 6 7.8840 5.8514 0.4551 21 6 7.9183 6.5641 -0.7373 22 6 8.4002 7.8579 -0.7529 23 6 8.8574 8.4415 0.4148 24 6 8.8296 7.7333 1.6025 25 6 8.3444 6.4408 1.6263 26 6 6.0574 2.2128 -1.2441 27 6 5.4701 0.8009 -1.3157 28 8 4.0461 0.8733 -1.2219 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6767 1.9563 -0.8901 36 1 3.7570 3.3008 1.0781 37 1 3.6833 3.4801 -0.6925 38 1 11.3485 2.8147 1.0319 39 1 7.5656 6.1074 -1.6503 40 1 8.4234 8.4138 -1.6785 41 1 9.2373 9.4523 0.3990 42 1 9.1877 8.1918 2.5123 43 1 8.3234 5.8882 2.5540 44 1 5.7009 2.7990 -2.0911 45 1 7.1456 2.1576 -1.2716 46 1 5.7491 0.3388 -2.2628 47 1 5.8590 0.2032 -0.4913 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183550055.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:06 Heat of formation + Delta-G solvation = -63.949837 kcal Electronic energy + Delta-G solvation = -27600.748609 eV Core-core repulsion = 23941.055816 eV Total energy + Delta-G solvation = -3659.692793 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.17123 -39.05083 -37.54182 -34.98878 -34.92654 -33.14514 -32.16702 -31.03676 -30.35216 -29.21249 -27.10813 -25.25877 -24.59437 -22.60615 -22.14104 -21.94333 -20.95306 -20.09194 -18.91544 -17.85170 -16.54331 -16.27359 -15.92903 -15.49218 -15.42386 -14.73136 -14.67992 -14.36427 -14.21228 -13.83248 -13.73297 -13.23673 -13.20559 -12.94152 -12.78987 -12.60321 -12.49928 -12.24404 -12.17400 -12.02232 -11.38190 -11.16537 -11.11924 -11.04385 -10.84752 -10.81962 -10.68829 -10.63948 -10.54381 -10.22368 -10.07326 -9.86799 -9.39926 -9.30206 -8.72213 -8.48117 -8.27557 -7.64013 -6.61281 -4.24682 1.90173 1.99639 3.11826 3.24002 3.28158 3.53569 4.00557 4.09863 4.14310 4.39148 4.79664 4.87546 5.02618 5.08176 5.24989 5.31175 5.37997 5.38923 5.45251 5.49003 5.51897 5.64788 5.66642 5.71733 5.80375 5.82251 5.88605 5.92686 6.02094 6.06985 6.12233 6.15217 6.17142 6.25651 6.28519 6.35084 6.37382 6.47543 6.60024 6.63530 6.74113 6.91228 7.05288 7.13963 7.25372 7.51222 7.58868 7.89802 8.14822 8.77605 9.15697 9.47891 10.46834 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018380 B = 0.003994 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.057287 B = 7009.505019 C = 7784.636324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.110 4.110 4 C 0.092 3.908 5 H 0.056 0.944 6 C -0.131 4.131 7 C -0.086 4.086 8 H 0.095 0.905 9 C 0.492 3.508 10 O -0.576 6.576 11 N -0.424 5.424 12 C -0.352 4.352 13 H 0.111 0.889 14 C 0.081 3.919 15 N -0.852 5.852 16 Si 0.860 3.140 17 H -0.260 1.260 18 H -0.290 1.290 19 H -0.258 1.258 20 C 0.162 3.838 21 C -0.130 4.130 22 C -0.116 4.116 23 C -0.145 4.145 24 C -0.115 4.115 25 C -0.115 4.115 26 C -0.139 4.139 27 C 0.066 3.934 28 O -0.382 6.382 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.277 0.723 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.118 0.882 43 H 0.127 0.873 44 H 0.066 0.934 45 H 0.091 0.909 46 H 0.091 0.909 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.593 -1.349 -1.816 8.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.148 4.148 4 C 0.034 3.966 5 H 0.074 0.926 6 C -0.169 4.169 7 C -0.108 4.108 8 H 0.113 0.887 9 C 0.283 3.717 10 O -0.459 6.459 11 N -0.140 5.140 12 C -0.477 4.477 13 H 0.128 0.872 14 C -0.128 4.128 15 N -0.486 5.486 16 Si 0.685 3.315 17 H -0.185 1.185 18 H -0.217 1.217 19 H -0.182 1.182 20 C 0.070 3.930 21 C -0.150 4.150 22 C -0.135 4.135 23 C -0.163 4.163 24 C -0.133 4.133 25 C -0.135 4.135 26 C -0.177 4.177 27 C -0.010 4.010 28 O -0.301 6.301 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.136 0.864 40 H 0.134 0.866 41 H 0.132 0.868 42 H 0.136 0.864 43 H 0.145 0.855 44 H 0.084 0.916 45 H 0.109 0.891 46 H 0.109 0.891 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.895 -1.084 -2.047 9.192 hybrid contribution 1.030 0.547 -0.382 1.227 sum -7.866 -0.537 -2.429 8.249 Atomic orbital electron populations 1.21782 0.96246 1.01277 1.01625 1.21487 0.95254 0.96845 1.02391 1.21621 0.93076 0.97345 1.02729 1.22118 0.94147 0.93211 0.87086 0.92620 1.22068 0.94756 0.96647 1.03415 1.21025 0.95043 0.94550 1.00136 0.88727 1.20572 0.82533 0.90635 0.78000 1.90576 1.57081 1.46574 1.51651 1.41538 1.10879 1.03480 1.58060 1.19065 0.90188 1.01236 1.37246 0.87195 1.25233 0.95698 0.95772 0.96120 1.69737 1.03644 1.38933 1.36299 0.87112 0.78981 0.81496 0.83873 1.18459 1.21724 1.18227 1.17814 0.96432 0.85946 0.92803 1.21195 1.01101 0.95381 0.97364 1.20845 0.99862 0.94738 0.98037 1.20935 1.02650 0.99654 0.93089 1.20917 1.00201 0.94458 0.97767 1.21173 1.00029 0.94506 0.97761 1.22019 1.02836 0.96191 0.96626 1.22547 0.80567 0.96048 1.01853 1.87855 1.21291 1.82336 1.38651 0.92962 0.92827 0.93028 0.91243 0.92329 0.90776 0.91152 0.91209 0.90329 0.91235 0.86422 0.86600 0.86767 0.86419 0.85522 0.91551 0.89075 0.89055 0.92980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.91 37.16 0.37 -1.01 16 2 C -0.12 -1.30 5.83 -26.73 -0.16 -1.46 16 3 C -0.11 -1.32 4.92 -26.73 -0.13 -1.45 16 4 C 0.09 1.31 2.64 -26.68 -0.07 1.23 16 5 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 6 C -0.13 -2.17 4.24 -26.59 -0.11 -2.28 16 7 C -0.09 -1.63 1.91 -91.59 -0.17 -1.80 16 8 H 0.09 1.79 6.53 -51.93 -0.34 1.45 16 9 C 0.49 11.15 6.62 -10.99 -0.07 11.08 16 10 O -0.58 -14.23 15.45 5.56 0.09 -14.14 16 11 N -0.42 -10.05 2.37 -58.98 -0.14 -10.19 16 12 C -0.35 -8.71 8.24 -14.94 -0.12 -8.83 16 13 H 0.11 2.79 6.64 -52.49 -0.35 2.44 16 14 C 0.08 2.07 5.31 -17.49 -0.09 1.98 16 15 N -0.85 -22.68 13.96 55.49 0.77 -21.91 16 16 Si 0.86 20.43 23.92 -169.99 -4.07 16.36 16 17 H -0.26 -6.23 6.98 56.52 0.39 -5.84 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.26 -6.10 5.94 56.52 0.34 -5.76 16 20 C 0.16 3.77 2.44 -83.69 -0.20 3.56 16 21 C -0.13 -2.86 5.82 -39.37 -0.23 -3.09 16 22 C -0.12 -2.19 9.99 -39.61 -0.40 -2.58 16 23 C -0.14 -2.53 10.04 -39.53 -0.40 -2.93 16 24 C -0.11 -2.11 10.04 -39.61 -0.40 -2.51 16 25 C -0.11 -2.47 9.43 -39.37 -0.37 -2.84 16 26 C -0.14 -2.42 5.34 -26.59 -0.14 -2.56 16 27 C 0.07 0.98 6.84 37.20 0.25 1.23 16 28 O -0.38 -5.82 9.94 -35.23 -0.35 -6.17 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.80 7.82 -51.93 -0.41 0.39 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.08 1.42 7.79 -51.93 -0.40 1.01 16 38 H 0.28 7.00 8.31 -40.82 -0.34 6.66 16 39 H 0.12 2.64 7.44 -52.48 -0.39 2.25 16 40 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 41 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 42 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 43 H 0.13 2.70 8.06 -52.49 -0.42 2.27 16 44 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.09 1.72 7.55 -51.93 -0.39 1.32 16 46 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 47 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 369.12 15.07 5.56 5.56 Total: -1.00 -28.74 369.12 -8.41 -37.15 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -7.83 Total: 7.59 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -2.45 Total: -14.26 kcal Atomic # 7 Polarization: -32.73 SS G_CDS: 0.63 Total: -32.10 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.26 Total: -20.31 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.07 Total: 16.36 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.74 -8.41 -37.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183550055.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.799 kcal (2) G-P(sol) polarization free energy of solvation -28.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds