Wall clock time and date at job start Tue Mar 31 2020 12:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46978 * 2 1 4 4 C 1.52994 * 109.46725 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.48456 * 304.97861 * 4 3 2 6 6 C 1.53100 * 109.49334 * 185.03782 * 4 3 2 7 7 C 1.53175 * 109.16329 * 182.49164 * 6 4 3 8 8 H 1.09006 * 109.54202 * 296.93811 * 7 6 4 9 9 C 1.50701 * 109.54749 * 176.75732 * 7 6 4 10 10 O 1.21280 * 120.00068 * 339.69477 * 9 7 6 11 11 N 1.34775 * 119.99821 * 159.41674 * 9 7 6 12 12 C 1.37142 * 120.00240 * 356.95698 * 11 9 7 13 13 H 1.07998 * 119.99940 * 324.76548 * 12 11 9 14 14 C 1.38889 * 120.00032 * 144.76006 * 12 11 9 15 15 N 1.31412 * 120.00293 * 159.78390 * 14 12 11 16 16 Si 1.86804 * 119.99973 * 339.78693 * 14 12 11 17 17 H 1.48495 * 109.47493 * 89.79599 * 16 14 12 18 18 H 1.48501 * 109.47218 * 209.79895 * 16 14 12 19 19 H 1.48502 * 109.47067 * 329.79720 * 16 14 12 20 20 C 1.39786 * 119.99728 * 176.95940 * 11 9 7 21 21 C 1.38962 * 120.08002 * 299.42258 * 20 11 9 22 22 C 1.38078 * 119.92381 * 179.79261 * 21 20 11 23 23 C 1.38307 * 120.08048 * 0.46334 * 22 21 20 24 24 C 1.38313 * 120.15238 * 359.78841 * 23 22 21 25 25 C 1.38078 * 120.07737 * 359.97438 * 24 23 22 26 26 C 1.53183 * 109.11130 * 56.84485 * 7 6 4 27 27 C 1.53090 * 109.15965 * 303.07043 * 26 7 6 28 28 O 1.42901 * 109.41775 * 57.60665 * 27 26 7 29 29 H 1.08995 * 109.47298 * 300.00092 * 1 2 3 30 30 H 1.09001 * 109.47239 * 60.00071 * 1 2 3 31 31 H 1.09001 * 109.47518 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46846 * 239.99887 * 2 1 3 33 33 H 1.09000 * 109.46854 * 120.00306 * 2 1 3 34 34 H 1.08995 * 109.47181 * 59.99837 * 3 2 1 35 35 H 1.09000 * 109.46855 * 299.99276 * 3 2 1 36 36 H 1.09005 * 109.60154 * 62.53824 * 6 4 3 37 37 H 1.09006 * 109.44968 * 302.34982 * 6 4 3 38 38 H 0.97003 * 120.00327 * 180.02562 * 15 14 12 39 39 H 1.08005 * 120.03306 * 359.97438 * 21 20 11 40 40 H 1.07998 * 119.96441 * 180.25147 * 22 21 20 41 41 H 1.07999 * 119.92485 * 179.76869 * 23 22 21 42 42 H 1.07996 * 119.96024 * 179.97438 * 24 23 22 43 43 H 1.07999 * 120.04117 * 179.97438 * 25 24 23 44 44 H 1.08999 * 109.51904 * 62.97017 * 26 7 6 45 45 H 1.08996 * 109.52308 * 183.10278 * 26 7 6 46 46 H 1.09006 * 109.47870 * 177.59341 * 27 26 7 47 47 H 1.09003 * 109.48123 * 297.61100 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 1 3.9338 0.8533 0.8411 6 6 4.0809 2.8801 0.1261 7 6 5.6113 2.8772 0.0621 8 1 6.0107 2.3199 0.9095 9 6 6.1205 4.2949 0.1060 10 8 5.3840 5.2131 -0.1862 11 7 7.3927 4.5429 0.4754 12 6 8.2052 3.5114 0.8712 13 1 7.7923 2.6798 1.4229 14 6 9.5592 3.5362 0.5626 15 7 10.4029 2.7971 1.2473 16 14 10.1810 4.6204 -0.8257 17 1 10.5281 5.9609 -0.2896 18 1 11.3869 4.0030 -1.4339 19 1 9.1221 4.7591 -1.8577 20 6 7.8840 5.8514 0.4551 21 6 7.9183 6.5641 -0.7373 22 6 8.4002 7.8579 -0.7529 23 6 8.8574 8.4415 0.4148 24 6 8.8296 7.7333 1.6025 25 6 8.3444 6.4408 1.6263 26 6 6.0574 2.2128 -1.2441 27 6 5.4701 0.8009 -1.3157 28 8 4.0461 0.8733 -1.2219 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6767 1.9563 -0.8901 36 1 3.7570 3.3008 1.0781 37 1 3.6833 3.4801 -0.6925 38 1 11.3485 2.8147 1.0319 39 1 7.5656 6.1074 -1.6503 40 1 8.4234 8.4138 -1.6785 41 1 9.2373 9.4523 0.3990 42 1 9.1877 8.1918 2.5123 43 1 8.3234 5.8882 2.5540 44 1 5.7009 2.7990 -2.0911 45 1 7.1456 2.1576 -1.2716 46 1 5.7491 0.3388 -2.2628 47 1 5.8590 0.2032 -0.4913 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183550055.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:05 Heat of formation + Delta-G solvation = -78.835690 kcal Electronic energy + Delta-G solvation = -27601.394108 eV Core-core repulsion = 23941.055816 eV Total energy + Delta-G solvation = -3660.338292 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.82203 -40.42365 -39.11078 -36.79688 -35.89973 -34.58985 -34.10668 -32.15194 -31.89784 -30.80459 -28.25626 -27.07167 -26.03142 -23.91935 -23.61707 -23.36781 -21.95408 -21.50021 -20.71129 -19.51100 -18.21725 -17.65403 -17.43579 -17.10291 -16.85176 -16.38967 -15.98436 -15.73256 -15.39444 -15.29476 -15.17891 -14.84190 -14.66551 -14.47768 -14.31449 -14.12618 -13.91670 -13.61253 -13.60157 -13.04161 -12.93769 -12.70647 -12.55272 -12.43500 -12.26969 -12.21838 -12.15141 -11.91649 -11.83012 -11.54955 -11.45473 -11.23747 -11.19612 -10.78261 -10.33900 -10.26826 -9.85034 -9.34826 -8.59886 -6.22692 0.33449 0.43118 1.20854 1.30007 1.36447 1.74600 2.17447 2.44573 2.75411 2.85750 3.00839 3.67268 3.78091 3.84792 3.95464 4.00721 4.06157 4.15831 4.20406 4.23147 4.32692 4.33972 4.44236 4.52051 4.53383 4.63283 4.66198 4.72922 4.75814 4.79555 4.84626 4.88209 4.99765 5.06903 5.08466 5.12121 5.16565 5.26278 5.32200 5.35610 5.42842 5.48270 5.53579 5.53714 5.59575 5.95807 5.97683 6.30030 6.30882 6.84849 7.27167 7.64283 8.51385 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018380 B = 0.003994 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.057287 B = 7009.505019 C = 7784.636324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.107 4.107 4 C 0.095 3.905 5 H 0.065 0.935 6 C -0.122 4.122 7 C -0.085 4.085 8 H 0.091 0.909 9 C 0.484 3.516 10 O -0.602 6.602 11 N -0.433 5.433 12 C -0.341 4.341 13 H 0.097 0.903 14 C 0.054 3.946 15 N -0.885 5.885 16 Si 0.902 3.098 17 H -0.259 1.259 18 H -0.291 1.291 19 H -0.265 1.265 20 C 0.127 3.873 21 C -0.153 4.153 22 C -0.118 4.118 23 C -0.133 4.133 24 C -0.110 4.110 25 C -0.138 4.138 26 C -0.133 4.133 27 C 0.072 3.928 28 O -0.386 6.386 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.280 0.720 39 H 0.100 0.900 40 H 0.150 0.850 41 H 0.162 0.838 42 H 0.155 0.845 43 H 0.116 0.884 44 H 0.056 0.944 45 H 0.073 0.927 46 H 0.114 0.886 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.882 -0.277 -1.901 9.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C -0.145 4.145 4 C 0.037 3.963 5 H 0.083 0.917 6 C -0.161 4.161 7 C -0.106 4.106 8 H 0.109 0.891 9 C 0.276 3.724 10 O -0.486 6.486 11 N -0.148 5.148 12 C -0.467 4.467 13 H 0.114 0.886 14 C -0.152 4.152 15 N -0.520 5.520 16 Si 0.729 3.271 17 H -0.184 1.184 18 H -0.218 1.218 19 H -0.190 1.190 20 C 0.036 3.964 21 C -0.173 4.173 22 C -0.136 4.136 23 C -0.151 4.151 24 C -0.129 4.129 25 C -0.158 4.158 26 C -0.172 4.172 27 C -0.005 4.005 28 O -0.305 6.305 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.118 0.882 40 H 0.168 0.832 41 H 0.180 0.820 42 H 0.173 0.827 43 H 0.134 0.866 44 H 0.075 0.925 45 H 0.091 0.909 46 H 0.132 0.868 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.183 -0.004 -2.132 9.428 hybrid contribution 1.090 0.361 -0.325 1.193 sum -8.094 0.356 -2.457 8.466 Atomic orbital electron populations 1.21761 0.94916 1.02083 1.01943 1.21450 0.96403 0.95585 1.02195 1.21633 0.91214 0.98556 1.03058 1.22204 0.95654 0.91328 0.87118 0.91689 1.22021 0.92906 0.98383 1.02755 1.21075 0.96588 0.92219 1.00685 0.89063 1.21221 0.82073 0.91938 0.77169 1.90536 1.57502 1.47738 1.52847 1.41625 1.11011 1.03885 1.58308 1.18932 0.90196 1.01328 1.36245 0.88589 1.25560 0.95888 0.96610 0.97159 1.69778 1.03990 1.40677 1.37587 0.86439 0.78071 0.80495 0.82139 1.18374 1.21826 1.18969 1.18143 0.98160 0.86100 0.94024 1.21254 1.02684 0.97050 0.96342 1.21326 0.98408 0.93541 1.00318 1.21505 1.00403 1.01383 0.91784 1.21399 0.98492 0.93055 0.99920 1.21320 1.01372 0.96213 0.96900 1.21976 1.01791 0.97983 0.95402 1.22579 0.80319 0.94044 1.03517 1.87867 1.21327 1.82134 1.39205 0.92303 0.92882 0.92008 0.92179 0.91781 0.89582 0.91730 0.91104 0.92013 0.90987 0.88177 0.83229 0.81996 0.82715 0.86585 0.92548 0.90861 0.86774 0.92116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 9.91 71.98 0.71 -1.71 16 2 C -0.12 -2.33 5.83 30.60 0.18 -2.15 16 3 C -0.11 -2.43 4.92 30.59 0.15 -2.28 16 4 C 0.09 2.61 2.64 30.63 0.08 2.69 16 5 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 6 C -0.12 -4.12 4.24 30.69 0.13 -3.99 16 7 C -0.08 -3.29 1.91 -11.42 -0.02 -3.31 16 8 H 0.09 3.58 6.53 -2.38 -0.02 3.57 16 9 C 0.48 22.78 6.62 87.66 0.58 23.36 16 10 O -0.60 -30.76 15.45 -3.03 -0.05 -30.81 16 11 N -0.43 -21.16 2.37 -458.90 -1.09 -22.25 16 12 C -0.34 -17.43 8.24 84.02 0.69 -16.74 16 13 H 0.10 5.08 6.64 -2.91 -0.02 5.06 16 14 C 0.05 2.82 5.31 84.91 0.45 3.27 16 15 N -0.88 -47.92 13.96 21.65 0.30 -47.62 16 16 Si 0.90 42.74 23.92 68.60 1.64 44.38 16 17 H -0.26 -12.08 6.98 99.48 0.69 -11.38 16 18 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 19 H -0.26 -12.68 5.94 99.48 0.59 -12.09 16 20 C 0.13 5.97 2.44 38.22 0.09 6.06 16 21 C -0.15 -6.71 5.82 22.41 0.13 -6.58 16 22 C -0.12 -4.12 9.99 22.25 0.22 -3.90 16 23 C -0.13 -4.10 10.04 22.30 0.22 -3.87 16 24 C -0.11 -3.74 10.04 22.25 0.22 -3.52 16 25 C -0.14 -5.90 9.43 22.41 0.21 -5.68 16 26 C -0.13 -4.77 5.34 30.69 0.16 -4.61 16 27 C 0.07 2.07 6.84 72.01 0.49 2.56 16 28 O -0.39 -11.39 9.94 -148.98 -1.48 -12.88 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 1.30 7.82 -2.38 -0.02 1.28 16 33 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 37 H 0.06 2.28 7.79 -2.38 -0.02 2.26 16 38 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 39 H 0.10 4.61 7.44 -2.91 -0.02 4.59 16 40 H 0.15 4.13 8.06 -2.91 -0.02 4.10 16 41 H 0.16 3.49 8.06 -2.91 -0.02 3.47 16 42 H 0.16 4.02 8.06 -2.91 -0.02 3.99 16 43 H 0.12 5.05 8.06 -2.91 -0.02 5.03 16 44 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.07 2.87 7.55 -2.39 -0.02 2.85 16 46 H 0.11 2.77 8.14 -2.38 -0.02 2.75 16 47 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -63.58 369.12 4.85 -58.73 By element: Atomic # 1 Polarization: 30.04 SS G_CDS: 0.80 Total: 30.84 kcal Atomic # 6 Polarization: -25.12 SS G_CDS: 4.72 Total: -20.40 kcal Atomic # 7 Polarization: -69.08 SS G_CDS: -0.79 Total: -69.87 kcal Atomic # 8 Polarization: -42.16 SS G_CDS: -1.53 Total: -43.69 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 1.64 Total: 44.38 kcal Total: -63.58 4.85 -58.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183550055.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.104 kcal (2) G-P(sol) polarization free energy of solvation -63.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds