Wall clock time and date at job start Tue Mar 31 2020 12:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47222 * 2 1 4 4 C 1.52995 * 109.47304 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.48170 * 55.01844 * 4 3 2 6 6 C 1.53084 * 109.48276 * 175.05923 * 4 3 2 7 7 C 1.53175 * 109.16680 * 177.59249 * 6 4 3 8 8 H 1.08998 * 109.62186 * 183.10701 * 7 6 4 9 9 C 1.50697 * 109.54571 * 62.88196 * 7 6 4 10 10 O 1.21277 * 120.00070 * 242.43108 * 9 7 6 11 11 N 1.34779 * 120.00051 * 62.43040 * 9 7 6 12 12 C 1.37137 * 119.99875 * 208.29254 * 11 9 7 13 13 H 1.07999 * 119.99817 * 224.08965 * 12 11 9 14 14 C 1.38887 * 120.00559 * 44.08560 * 12 11 9 15 15 N 1.31421 * 119.99651 * 37.62995 * 14 12 11 16 16 Si 1.86795 * 120.00310 * 217.62906 * 14 12 11 17 17 H 1.48502 * 109.47160 * 90.00003 * 16 14 12 18 18 H 1.48499 * 109.47346 * 210.00055 * 16 14 12 19 19 H 1.48497 * 109.47410 * 330.00007 * 16 14 12 20 20 C 1.39789 * 119.99796 * 28.28903 * 11 9 7 21 21 C 1.38955 * 120.08105 * 78.20870 * 20 11 9 22 22 C 1.38078 * 119.92354 * 179.79037 * 21 20 11 23 23 C 1.38304 * 120.07815 * 0.46495 * 22 21 20 24 24 C 1.38312 * 120.15815 * 359.78708 * 23 22 21 25 25 C 1.38090 * 120.07423 * 359.97438 * 24 23 22 26 26 C 1.53185 * 109.03195 * 303.01493 * 7 6 4 27 27 C 1.53098 * 109.16005 * 56.98200 * 26 7 6 28 28 O 1.42897 * 109.41517 * 302.38568 * 27 26 7 29 29 H 1.09000 * 109.46922 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46821 * 299.99689 * 1 2 3 31 31 H 1.08998 * 109.47413 * 59.99808 * 1 2 3 32 32 H 1.08997 * 109.47265 * 240.00027 * 2 1 3 33 33 H 1.09003 * 109.46958 * 120.00057 * 2 1 3 34 34 H 1.08997 * 109.46979 * 59.99852 * 3 2 1 35 35 H 1.08996 * 109.46606 * 300.00200 * 3 2 1 36 36 H 1.09005 * 109.52489 * 57.68124 * 6 4 3 37 37 H 1.09008 * 109.52142 * 297.49398 * 6 4 3 38 38 H 0.97011 * 119.99990 * 184.61165 * 15 14 12 39 39 H 1.08007 * 120.03483 * 0.02562 * 21 20 11 40 40 H 1.08001 * 119.96443 * 180.23091 * 22 21 20 41 41 H 1.07997 * 119.92381 * 179.76750 * 23 22 21 42 42 H 1.07995 * 119.96462 * 179.97438 * 24 23 22 43 43 H 1.07997 * 120.03502 * 180.02562 * 25 24 23 44 44 H 1.09002 * 109.52192 * 176.88491 * 26 7 6 45 45 H 1.08997 * 109.52153 * 297.01031 * 26 7 6 46 46 H 1.09002 * 109.48024 * 62.37695 * 27 26 7 47 47 H 1.08997 * 109.47566 * 182.39242 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9332 0.8536 -0.8428 6 6 4.0805 2.8804 -0.1249 7 6 5.6111 2.8777 -0.0643 8 1 5.9805 3.9026 -0.0968 9 6 6.1606 2.1064 -1.2366 10 8 6.8129 1.1013 -1.0491 11 7 5.9273 2.5337 -2.4934 12 6 5.8831 1.6330 -3.5266 13 1 6.3835 1.8544 -4.4577 14 6 5.1948 0.4362 -3.3757 15 7 4.0665 0.4074 -2.7024 16 14 5.8727 -1.1326 -4.1298 17 1 6.7622 -1.8080 -3.1511 18 1 4.7495 -2.0371 -4.4842 19 1 6.6453 -0.8000 -5.3536 20 6 5.7304 3.8948 -2.7436 21 6 6.8183 4.7576 -2.7975 22 6 6.6203 6.1007 -3.0492 23 6 5.3403 6.5893 -3.2381 24 6 4.2546 5.7344 -3.1799 25 6 4.4456 4.3891 -2.9335 26 6 6.0581 2.2130 1.2414 27 6 5.4712 0.8008 1.3129 28 8 4.0471 0.8730 1.2202 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.6845 3.4797 0.6949 37 1 3.7544 3.3018 -1.0759 38 1 3.6202 -0.4384 -2.5397 39 1 7.8178 4.3773 -2.6465 40 1 7.4657 6.7713 -3.0950 41 1 5.1881 7.6409 -3.4310 42 1 3.2564 6.1193 -3.3274 43 1 3.5974 3.7221 -2.8887 44 1 7.1463 2.1569 1.2676 45 1 5.7031 2.7994 2.0888 46 1 5.8595 0.2035 0.4879 47 1 5.7510 0.3384 2.2594 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183550072.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:10 Heat of formation + Delta-G solvation = -54.675540 kcal Electronic energy + Delta-G solvation = -29068.212358 eV Core-core repulsion = 25408.921728 eV Total energy + Delta-G solvation = -3659.290629 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.10170 -38.50869 -37.18155 -34.75861 -34.14481 -32.94933 -32.06213 -30.60026 -30.31172 -28.77162 -26.81779 -25.28702 -23.88871 -22.43325 -22.04837 -21.71051 -20.69332 -20.20839 -18.76618 -17.44991 -16.23933 -15.75171 -15.54821 -15.40627 -15.09580 -14.49111 -14.23099 -14.12785 -13.98716 -13.87463 -13.49429 -13.21822 -12.90321 -12.81120 -12.27649 -12.20088 -12.08379 -11.90218 -11.66696 -11.58943 -11.46048 -11.12868 -10.92744 -10.86683 -10.78890 -10.68625 -10.56094 -10.36604 -10.19667 -10.07052 -9.85018 -9.52137 -8.86886 -8.66563 -8.42522 -8.33780 -8.06569 -7.48514 -6.48128 -4.05319 1.86915 1.91697 3.19610 3.32599 3.38950 3.75504 4.15657 4.30203 4.61071 4.71041 4.90149 5.24845 5.35976 5.38048 5.45805 5.49383 5.54335 5.57194 5.62571 5.69150 5.82418 5.92101 5.99473 6.05076 6.08523 6.10371 6.25314 6.26942 6.29714 6.32068 6.39342 6.45903 6.47224 6.55202 6.62275 6.67455 6.73440 6.80207 6.85691 6.90186 6.93680 6.99572 7.25117 7.26346 7.42363 7.59802 8.08503 8.15464 8.74613 8.94537 9.34785 9.88167 10.49507 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010005 B = 0.006782 C = 0.005715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2797.832635 B = 4127.884506 C = 4897.916420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C -0.094 4.094 4 C 0.053 3.947 5 H 0.137 0.863 6 C -0.131 4.131 7 C -0.110 4.110 8 H 0.077 0.923 9 C 0.516 3.484 10 O -0.545 6.545 11 N -0.435 5.435 12 C -0.335 4.335 13 H 0.080 0.920 14 C 0.079 3.921 15 N -0.824 5.824 16 Si 0.901 3.099 17 H -0.271 1.271 18 H -0.288 1.288 19 H -0.271 1.271 20 C 0.165 3.835 21 C -0.139 4.139 22 C -0.116 4.116 23 C -0.144 4.144 24 C -0.118 4.118 25 C -0.116 4.116 26 C -0.128 4.128 27 C 0.055 3.945 28 O -0.395 6.395 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.048 0.952 35 H 0.070 0.930 36 H 0.053 0.947 37 H 0.084 0.916 38 H 0.270 0.730 39 H 0.116 0.884 40 H 0.114 0.886 41 H 0.112 0.888 42 H 0.115 0.885 43 H 0.130 0.870 44 H 0.069 0.931 45 H 0.061 0.939 46 H 0.079 0.921 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.827 6.872 3.631 8.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.131 4.131 4 C -0.003 4.003 5 H 0.154 0.846 6 C -0.168 4.168 7 C -0.132 4.132 8 H 0.096 0.904 9 C 0.307 3.693 10 O -0.424 6.424 11 N -0.155 5.155 12 C -0.459 4.459 13 H 0.098 0.902 14 C -0.130 4.130 15 N -0.458 5.458 16 Si 0.726 3.274 17 H -0.197 1.197 18 H -0.214 1.214 19 H -0.195 1.195 20 C 0.073 3.927 21 C -0.158 4.158 22 C -0.135 4.135 23 C -0.163 4.163 24 C -0.137 4.137 25 C -0.136 4.136 26 C -0.167 4.167 27 C -0.021 4.021 28 O -0.315 6.315 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.102 0.898 38 H 0.080 0.920 39 H 0.134 0.866 40 H 0.132 0.868 41 H 0.130 0.870 42 H 0.133 0.867 43 H 0.147 0.853 44 H 0.088 0.912 45 H 0.080 0.920 46 H 0.097 0.903 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.794 6.140 3.865 7.774 hybrid contribution 0.366 -0.387 -0.478 0.716 sum -2.428 5.753 3.387 7.104 Atomic orbital electron populations 1.21774 0.96964 1.00768 1.01087 1.21424 0.94343 0.97443 1.02402 1.21403 0.94107 0.96806 1.00815 1.23119 0.93709 0.93961 0.89550 0.84634 1.22147 0.93173 0.99028 1.02485 1.21340 0.97315 0.99798 0.94744 0.90446 1.20032 0.79976 0.85934 0.83373 1.90443 1.38753 1.28643 1.84564 1.40897 1.65935 1.02043 1.06586 1.18893 1.33155 0.98036 0.95796 0.90249 1.25178 0.91743 1.00161 0.95946 1.69867 1.10519 1.27115 1.38269 0.86388 0.79203 0.82210 0.79550 1.19688 1.21377 1.19530 1.18306 0.91877 0.86261 0.96219 1.21385 0.98633 0.93528 1.02295 1.20879 0.96796 0.94930 1.00884 1.20958 0.92898 0.99073 1.03351 1.21015 0.98392 0.93604 1.00704 1.21623 0.97594 0.94892 0.99444 1.21893 1.00989 0.97862 0.95919 1.22657 0.81374 0.95992 1.02117 1.87718 1.20657 1.82856 1.40281 0.93442 0.93437 0.93050 0.91509 0.92125 0.93292 0.91170 0.92826 0.89795 0.91983 0.86572 0.86774 0.86981 0.86737 0.85265 0.91214 0.92021 0.90336 0.90780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.91 37.16 0.37 -1.69 16 2 C -0.12 -2.01 5.83 -26.73 -0.16 -2.16 16 3 C -0.09 -1.68 4.92 -26.73 -0.13 -1.81 16 4 C 0.05 1.09 2.42 -26.69 -0.06 1.02 16 5 H 0.14 3.17 3.67 -51.93 -0.19 2.98 16 6 C -0.13 -2.54 4.82 -26.60 -0.13 -2.67 16 7 C -0.11 -2.21 2.39 -91.59 -0.22 -2.43 16 8 H 0.08 1.46 7.75 -51.93 -0.40 1.06 16 9 C 0.52 12.21 4.57 -10.99 -0.05 12.16 16 10 O -0.54 -14.46 13.46 5.56 0.07 -14.39 16 11 N -0.43 -10.27 2.46 -58.98 -0.15 -10.42 16 12 C -0.33 -8.67 8.87 -14.94 -0.13 -8.80 16 13 H 0.08 2.09 8.04 -52.49 -0.42 1.67 16 14 C 0.08 2.02 4.35 -17.49 -0.08 1.94 16 15 N -0.82 -20.50 10.21 55.49 0.57 -19.93 16 16 Si 0.90 20.90 29.68 -169.99 -5.05 15.85 16 17 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 20 C 0.16 3.38 3.73 -83.70 -0.31 3.07 16 21 C -0.14 -2.52 9.96 -39.37 -0.39 -2.91 16 22 C -0.12 -1.75 10.04 -39.62 -0.40 -2.15 16 23 C -0.14 -2.07 10.04 -39.53 -0.40 -2.46 16 24 C -0.12 -1.84 10.04 -39.61 -0.40 -2.23 16 25 C -0.12 -2.18 8.13 -39.37 -0.32 -2.50 16 26 C -0.13 -2.39 5.28 -26.58 -0.14 -2.53 16 27 C 0.06 1.11 6.55 37.21 0.24 1.35 16 28 O -0.40 -8.22 9.94 -35.23 -0.35 -8.57 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 1.23 8.10 -51.93 -0.42 0.81 16 33 H 0.06 1.06 7.82 -51.93 -0.41 0.65 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.08 1.67 4.53 -51.92 -0.24 1.44 16 38 H 0.27 6.53 8.28 -40.82 -0.34 6.19 16 39 H 0.12 2.10 8.06 -52.48 -0.42 1.68 16 40 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 41 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 42 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 43 H 0.13 2.60 7.06 -52.49 -0.37 2.23 16 44 H 0.07 1.27 8.05 -51.93 -0.42 0.85 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.08 1.84 5.73 -51.93 -0.30 1.54 16 47 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 365.34 15.07 5.51 5.51 Total: -1.00 -27.56 365.34 -9.47 -37.03 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -7.37 Total: 9.73 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: -2.70 Total: -14.81 kcal Atomic # 7 Polarization: -30.77 SS G_CDS: 0.42 Total: -30.35 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.28 Total: -22.96 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.05 Total: 15.85 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -27.56 -9.47 -37.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183550072.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.647 kcal (2) G-P(sol) polarization free energy of solvation -27.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds