Wall clock time and date at job start Tue Mar 31 2020 12:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47222 * 2 1 4 4 C 1.52995 * 109.47304 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.48170 * 55.01844 * 4 3 2 6 6 C 1.53084 * 109.48276 * 175.05923 * 4 3 2 7 7 C 1.53175 * 109.16680 * 177.59249 * 6 4 3 8 8 H 1.08998 * 109.62186 * 183.10701 * 7 6 4 9 9 C 1.50697 * 109.54571 * 62.88196 * 7 6 4 10 10 O 1.21277 * 120.00070 * 242.43108 * 9 7 6 11 11 N 1.34779 * 120.00051 * 62.43040 * 9 7 6 12 12 C 1.37137 * 119.99875 * 208.29254 * 11 9 7 13 13 H 1.07999 * 119.99817 * 224.08965 * 12 11 9 14 14 C 1.38887 * 120.00559 * 44.08560 * 12 11 9 15 15 N 1.31421 * 119.99651 * 37.62995 * 14 12 11 16 16 Si 1.86795 * 120.00310 * 217.62906 * 14 12 11 17 17 H 1.48502 * 109.47160 * 90.00003 * 16 14 12 18 18 H 1.48499 * 109.47346 * 210.00055 * 16 14 12 19 19 H 1.48497 * 109.47410 * 330.00007 * 16 14 12 20 20 C 1.39789 * 119.99796 * 28.28903 * 11 9 7 21 21 C 1.38955 * 120.08105 * 78.20870 * 20 11 9 22 22 C 1.38078 * 119.92354 * 179.79037 * 21 20 11 23 23 C 1.38304 * 120.07815 * 0.46495 * 22 21 20 24 24 C 1.38312 * 120.15815 * 359.78708 * 23 22 21 25 25 C 1.38090 * 120.07423 * 359.97438 * 24 23 22 26 26 C 1.53185 * 109.03195 * 303.01493 * 7 6 4 27 27 C 1.53098 * 109.16005 * 56.98200 * 26 7 6 28 28 O 1.42897 * 109.41517 * 302.38568 * 27 26 7 29 29 H 1.09000 * 109.46922 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46821 * 299.99689 * 1 2 3 31 31 H 1.08998 * 109.47413 * 59.99808 * 1 2 3 32 32 H 1.08997 * 109.47265 * 240.00027 * 2 1 3 33 33 H 1.09003 * 109.46958 * 120.00057 * 2 1 3 34 34 H 1.08997 * 109.46979 * 59.99852 * 3 2 1 35 35 H 1.08996 * 109.46606 * 300.00200 * 3 2 1 36 36 H 1.09005 * 109.52489 * 57.68124 * 6 4 3 37 37 H 1.09008 * 109.52142 * 297.49398 * 6 4 3 38 38 H 0.97011 * 119.99990 * 184.61165 * 15 14 12 39 39 H 1.08007 * 120.03483 * 0.02562 * 21 20 11 40 40 H 1.08001 * 119.96443 * 180.23091 * 22 21 20 41 41 H 1.07997 * 119.92381 * 179.76750 * 23 22 21 42 42 H 1.07995 * 119.96462 * 179.97438 * 24 23 22 43 43 H 1.07997 * 120.03502 * 180.02562 * 25 24 23 44 44 H 1.09002 * 109.52192 * 176.88491 * 26 7 6 45 45 H 1.08997 * 109.52153 * 297.01031 * 26 7 6 46 46 H 1.09002 * 109.48024 * 62.37695 * 27 26 7 47 47 H 1.08997 * 109.47566 * 182.39242 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9332 0.8536 -0.8428 6 6 4.0805 2.8804 -0.1249 7 6 5.6111 2.8777 -0.0643 8 1 5.9805 3.9026 -0.0968 9 6 6.1606 2.1064 -1.2366 10 8 6.8129 1.1013 -1.0491 11 7 5.9273 2.5337 -2.4934 12 6 5.8831 1.6330 -3.5266 13 1 6.3835 1.8544 -4.4577 14 6 5.1948 0.4362 -3.3757 15 7 4.0665 0.4074 -2.7024 16 14 5.8727 -1.1326 -4.1298 17 1 6.7622 -1.8080 -3.1511 18 1 4.7495 -2.0371 -4.4842 19 1 6.6453 -0.8000 -5.3536 20 6 5.7304 3.8948 -2.7436 21 6 6.8183 4.7576 -2.7975 22 6 6.6203 6.1007 -3.0492 23 6 5.3403 6.5893 -3.2381 24 6 4.2546 5.7344 -3.1799 25 6 4.4456 4.3891 -2.9335 26 6 6.0581 2.2130 1.2414 27 6 5.4712 0.8008 1.3129 28 8 4.0471 0.8730 1.2202 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.6845 3.4797 0.6949 37 1 3.7544 3.3018 -1.0759 38 1 3.6202 -0.4384 -2.5397 39 1 7.8178 4.3773 -2.6465 40 1 7.4657 6.7713 -3.0950 41 1 5.1881 7.6409 -3.4310 42 1 3.2564 6.1193 -3.3274 43 1 3.5974 3.7221 -2.8887 44 1 7.1463 2.1569 1.2676 45 1 5.7031 2.7994 2.0888 46 1 5.8595 0.2035 0.4879 47 1 5.7510 0.3384 2.2594 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183550072.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:09 Heat of formation + Delta-G solvation = -67.578330 kcal Electronic energy + Delta-G solvation = -29068.771865 eV Core-core repulsion = 25408.921728 eV Total energy + Delta-G solvation = -3659.850136 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.74065 -39.95838 -38.80710 -36.39624 -35.64521 -34.62004 -33.85003 -32.02462 -31.64697 -30.24464 -28.31198 -27.02656 -25.48727 -23.96217 -23.40427 -23.12360 -22.18861 -21.73298 -20.46546 -19.08185 -17.85160 -17.35031 -17.14825 -16.96734 -16.64751 -16.16653 -15.96783 -15.65106 -15.41608 -15.29778 -15.04945 -14.66086 -14.37377 -14.19954 -13.86020 -13.62069 -13.57898 -13.46926 -13.28051 -13.16419 -12.90569 -12.82703 -12.69605 -12.34207 -12.31589 -12.17067 -12.04079 -11.93367 -11.69745 -11.47804 -11.40123 -11.16420 -10.55930 -10.45784 -9.97448 -9.74285 -9.68960 -9.17399 -8.39721 -6.00799 0.53705 0.60755 1.27865 1.41917 1.45540 1.94689 2.29976 2.85943 3.02392 3.05201 3.08552 3.78187 3.81832 3.99393 4.08556 4.18825 4.22766 4.24633 4.28537 4.39162 4.39761 4.48009 4.59113 4.70818 4.73270 4.80724 4.81142 4.84839 4.88854 4.94226 4.95556 5.02476 5.11320 5.14064 5.19357 5.24284 5.26879 5.32964 5.38758 5.46884 5.52547 5.62085 5.71265 5.79549 5.86433 6.09626 6.24848 6.54263 6.86915 7.09851 7.53969 8.06251 8.53920 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010005 B = 0.006782 C = 0.005715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2797.832635 B = 4127.884506 C = 4897.916420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.116 4.116 3 C -0.088 4.088 4 C 0.046 3.954 5 H 0.108 0.892 6 C -0.124 4.124 7 C -0.105 4.105 8 H 0.091 0.909 9 C 0.508 3.492 10 O -0.589 6.589 11 N -0.439 5.439 12 C -0.359 4.359 13 H 0.062 0.938 14 C 0.052 3.948 15 N -0.823 5.823 16 Si 0.936 3.064 17 H -0.294 1.294 18 H -0.275 1.275 19 H -0.265 1.265 20 C 0.130 3.870 21 C -0.153 4.153 22 C -0.107 4.107 23 C -0.128 4.128 24 C -0.112 4.112 25 C -0.128 4.128 26 C -0.123 4.123 27 C 0.054 3.946 28 O -0.399 6.399 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.042 0.958 33 H 0.051 0.949 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.268 0.732 39 H 0.106 0.894 40 H 0.149 0.851 41 H 0.156 0.844 42 H 0.145 0.855 43 H 0.106 0.894 44 H 0.069 0.931 45 H 0.091 0.909 46 H 0.038 0.962 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.035 9.916 4.350 11.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.153 4.153 3 C -0.125 4.125 4 C -0.011 4.011 5 H 0.125 0.875 6 C -0.162 4.162 7 C -0.127 4.127 8 H 0.109 0.891 9 C 0.300 3.700 10 O -0.471 6.471 11 N -0.158 5.158 12 C -0.483 4.483 13 H 0.080 0.920 14 C -0.157 4.157 15 N -0.457 5.457 16 Si 0.762 3.238 17 H -0.221 1.221 18 H -0.200 1.200 19 H -0.189 1.189 20 C 0.040 3.960 21 C -0.173 4.173 22 C -0.125 4.125 23 C -0.145 4.145 24 C -0.130 4.130 25 C -0.148 4.148 26 C -0.161 4.161 27 C -0.022 4.022 28 O -0.319 6.319 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.124 0.876 40 H 0.167 0.833 41 H 0.174 0.826 42 H 0.163 0.837 43 H 0.124 0.876 44 H 0.088 0.912 45 H 0.110 0.890 46 H 0.056 0.944 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.026 9.218 4.559 11.044 hybrid contribution 0.789 -1.222 -0.729 1.627 sum -3.236 7.996 3.830 9.438 Atomic orbital electron populations 1.21708 0.94279 1.01891 1.01969 1.21370 0.96681 0.96509 1.00789 1.21360 0.92318 0.97504 1.01336 1.23092 0.95345 0.94136 0.88539 0.87499 1.22092 0.92589 0.98568 1.02932 1.21330 0.97678 0.99916 0.93743 0.89129 1.20676 0.79360 0.85650 0.84322 1.90412 1.40765 1.30601 1.85332 1.40869 1.65554 1.03298 1.06094 1.18822 1.33696 0.99868 0.95934 0.91976 1.25591 0.92112 1.01313 0.96709 1.69928 1.10422 1.27055 1.38245 0.85839 0.78785 0.80552 0.78656 1.22103 1.20021 1.18889 1.18470 0.93490 0.85002 0.99074 1.21440 0.97500 0.94960 1.03361 1.21264 0.98683 0.93691 0.98860 1.21453 0.91748 1.00923 1.00417 1.21349 1.00565 0.92038 0.99050 1.21470 0.96028 0.96327 1.00966 1.21891 1.01012 0.97128 0.96104 1.22653 0.81088 0.96680 1.01811 1.87705 1.20959 1.83085 1.40157 0.92274 0.91919 0.92734 0.93895 0.92973 0.91668 0.91449 0.90625 0.90493 0.92172 0.87632 0.83296 0.82624 0.83717 0.87603 0.91196 0.89023 0.94420 0.88136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.70 9.91 71.98 0.71 -2.98 16 2 C -0.12 -3.91 5.83 30.60 0.18 -3.73 16 3 C -0.09 -3.10 4.92 30.59 0.15 -2.95 16 4 C 0.05 1.89 2.42 30.62 0.07 1.96 16 5 H 0.11 5.19 3.67 -2.39 -0.01 5.19 16 6 C -0.12 -4.76 4.82 30.68 0.15 -4.61 16 7 C -0.11 -4.21 2.39 -11.42 -0.03 -4.23 16 8 H 0.09 3.34 7.75 -2.39 -0.02 3.32 16 9 C 0.51 24.94 4.57 87.66 0.40 25.34 16 10 O -0.59 -32.97 13.46 -3.02 -0.04 -33.01 16 11 N -0.44 -21.61 2.46 -458.91 -1.13 -22.74 16 12 C -0.36 -19.54 8.87 84.02 0.74 -18.79 16 13 H 0.06 3.48 8.04 -2.91 -0.02 3.46 16 14 C 0.05 2.76 4.35 84.91 0.37 3.13 16 15 N -0.82 -42.84 10.21 21.65 0.22 -42.62 16 16 Si 0.94 44.64 29.68 68.60 2.04 46.68 16 17 H -0.29 -15.02 7.11 99.48 0.71 -14.31 16 18 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 19 H -0.26 -12.21 7.11 99.48 0.71 -11.50 16 20 C 0.13 5.39 3.73 38.22 0.14 5.54 16 21 C -0.15 -5.46 9.96 22.40 0.22 -5.23 16 22 C -0.11 -2.84 10.04 22.25 0.22 -2.62 16 23 C -0.13 -3.04 10.04 22.30 0.22 -2.81 16 24 C -0.11 -3.10 10.04 22.25 0.22 -2.88 16 25 C -0.13 -4.76 8.13 22.41 0.18 -4.58 16 26 C -0.12 -4.50 5.28 30.69 0.16 -4.33 16 27 C 0.05 2.19 6.55 72.01 0.47 2.66 16 28 O -0.40 -16.54 9.94 -148.98 -1.48 -18.02 16 29 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.04 1.63 8.10 -2.39 -0.02 1.61 16 33 H 0.05 1.82 7.82 -2.39 -0.02 1.80 16 34 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 37 H 0.08 3.08 4.53 -2.38 -0.01 3.07 16 38 H 0.27 13.62 8.28 -92.70 -0.77 12.85 16 39 H 0.11 3.89 8.06 -2.91 -0.02 3.86 16 40 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 41 H 0.16 2.47 8.06 -2.91 -0.02 2.45 16 42 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 43 H 0.11 4.38 7.06 -2.91 -0.02 4.36 16 44 H 0.07 2.52 8.05 -2.39 -0.02 2.50 16 45 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 46 H 0.04 1.85 5.73 -2.39 -0.01 1.83 16 47 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 Total: -1.00 -63.90 365.34 5.16 -58.74 By element: Atomic # 1 Polarization: 31.16 SS G_CDS: 0.95 Total: 32.11 kcal Atomic # 6 Polarization: -25.74 SS G_CDS: 4.60 Total: -21.14 kcal Atomic # 7 Polarization: -64.45 SS G_CDS: -0.91 Total: -65.36 kcal Atomic # 8 Polarization: -49.51 SS G_CDS: -1.52 Total: -51.03 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.04 Total: 46.68 kcal Total: -63.90 5.16 -58.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183550072.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.842 kcal (2) G-P(sol) polarization free energy of solvation -63.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds