Wall clock time and date at job start Tue Mar 31 2020 12:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47310 * 2 1 4 4 C 1.53000 * 109.47310 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.48013 * 55.02577 * 4 3 2 6 6 C 1.53092 * 109.48141 * 175.05458 * 4 3 2 7 7 C 1.53173 * 109.16526 * 177.58998 * 6 4 3 8 8 H 1.09003 * 109.61419 * 62.93197 * 7 6 4 9 9 C 1.50703 * 109.54401 * 183.15218 * 7 6 4 10 10 O 1.21273 * 120.00198 * 28.03378 * 9 7 6 11 11 N 1.34777 * 119.99639 * 208.03432 * 9 7 6 12 12 C 1.37144 * 120.00366 * 4.00712 * 11 9 7 13 13 H 1.07998 * 119.99794 * 24.84938 * 12 11 9 14 14 C 1.38892 * 119.99945 * 204.84402 * 12 11 9 15 15 N 1.31415 * 119.99985 * 10.57776 * 14 12 11 16 16 Si 1.86798 * 119.99605 * 190.57512 * 14 12 11 17 17 H 1.48508 * 109.47023 * 90.00506 * 16 14 12 18 18 H 1.48500 * 109.47148 * 209.99935 * 16 14 12 19 19 H 1.48494 * 109.47451 * 330.00181 * 16 14 12 20 20 C 1.39796 * 119.99652 * 184.01712 * 11 9 7 21 21 C 1.38952 * 120.08014 * 66.36128 * 20 11 9 22 22 C 1.38089 * 119.91972 * 179.97438 * 21 20 11 23 23 C 1.38305 * 120.07671 * 0.02562 * 22 21 20 24 24 C 1.38301 * 120.16015 * 0.25623 * 23 22 21 25 25 C 1.38089 * 120.07321 * 359.48389 * 24 23 22 26 26 C 1.53177 * 109.03626 * 303.02211 * 7 6 4 27 27 C 1.53089 * 109.16241 * 56.98102 * 26 7 6 28 28 O 1.42897 * 109.48197 * 294.99636 * 4 3 2 29 29 H 1.09004 * 109.47212 * 300.00292 * 1 2 3 30 30 H 1.09002 * 109.46961 * 59.99987 * 1 2 3 31 31 H 1.09003 * 109.47256 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46786 * 239.99777 * 2 1 3 33 33 H 1.09002 * 109.46961 * 120.00012 * 2 1 3 34 34 H 1.09004 * 109.47222 * 59.99713 * 3 2 1 35 35 H 1.09005 * 109.47014 * 300.00437 * 3 2 1 36 36 H 1.09006 * 109.52470 * 57.68612 * 6 4 3 37 37 H 1.09002 * 109.52611 * 297.49904 * 6 4 3 38 38 H 0.96998 * 119.99860 * 184.97880 * 15 14 12 39 39 H 1.08004 * 120.04214 * 359.96301 * 21 20 11 40 40 H 1.08001 * 119.95721 * 180.02562 * 22 21 20 41 41 H 1.08001 * 119.91854 * 179.97438 * 23 22 21 42 42 H 1.07998 * 119.96669 * 179.71997 * 24 23 22 43 43 H 1.08003 * 120.03657 * 180.25151 * 25 24 23 44 44 H 1.09004 * 109.52097 * 176.88174 * 26 7 6 45 45 H 1.08993 * 109.52115 * 297.01041 * 26 7 6 46 46 H 1.08999 * 109.48460 * 62.37475 * 27 26 7 47 47 H 1.08998 * 109.48218 * 182.39703 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9339 0.8533 -0.8412 6 6 4.0806 2.8803 -0.1238 7 6 5.6111 2.8776 -0.0618 8 1 6.0106 2.3204 -0.9092 9 6 6.1200 4.2954 -0.1057 10 8 5.4331 5.1997 0.3199 11 7 7.3385 4.5584 -0.6181 12 6 8.0812 3.5484 -1.1741 13 1 7.5900 2.6716 -1.5693 14 6 9.4651 3.6533 -1.2291 15 7 10.0781 4.6108 -0.5700 16 14 10.4548 2.4333 -2.2398 17 1 10.6093 2.9478 -3.6243 18 1 11.7950 2.2541 -1.6260 19 1 9.7469 1.1284 -2.2727 20 6 7.8454 5.8607 -0.5825 21 6 8.1523 6.4556 0.6351 22 6 8.6534 7.7420 0.6664 23 6 8.8493 8.4383 -0.5124 24 6 8.5395 7.8515 -1.7258 25 6 8.0431 6.5635 -1.7649 26 6 6.0571 2.2133 1.2444 27 6 5.4702 0.8011 1.3159 28 8 4.0461 0.8734 1.2219 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 3.6840 3.4799 0.6956 37 1 3.7553 3.3014 -1.0751 38 1 11.0362 4.7288 -0.6654 39 1 7.9990 5.9126 1.5561 40 1 8.8925 8.2048 1.6124 41 1 9.2409 9.4445 -0.4850 42 1 8.6895 8.3998 -2.6441 43 1 7.8052 6.1043 -2.7131 44 1 7.1453 2.1572 1.2714 45 1 5.7013 2.7999 2.0913 46 1 5.8591 0.2036 0.4913 47 1 5.7492 0.3390 2.2628 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183550103.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:20 Heat of formation + Delta-G solvation = -68.954846 kcal Electronic energy + Delta-G solvation = -27466.345177 eV Core-core repulsion = 23806.435350 eV Total energy + Delta-G solvation = -3659.909827 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.92289 -38.80672 -37.19836 -34.93277 -34.80081 -33.07178 -31.70816 -31.02818 -29.88716 -28.90796 -27.07676 -25.13199 -24.59096 -22.59690 -21.86004 -21.50402 -20.90673 -20.00573 -19.02968 -17.56122 -16.46942 -16.27678 -15.61998 -15.41688 -14.86785 -14.66463 -14.45688 -14.43549 -14.31983 -13.76583 -13.42543 -13.40099 -13.07388 -12.70192 -12.49886 -12.43211 -12.19113 -12.08717 -11.70435 -11.58346 -11.37841 -11.21465 -11.19765 -11.10068 -10.83061 -10.73110 -10.59807 -10.55578 -10.32359 -10.30167 -10.13347 -9.85248 -9.40777 -9.32616 -8.47768 -8.26651 -7.86791 -7.44919 -6.28010 -4.14205 2.45278 2.49423 3.05209 3.14423 3.16479 3.70527 3.98078 4.01352 4.46297 4.80612 4.85396 5.02130 5.06715 5.09960 5.27088 5.33757 5.38577 5.45357 5.52977 5.65739 5.71810 5.78893 5.79792 5.82582 5.87946 5.88993 5.94024 6.01134 6.07116 6.14204 6.24689 6.28314 6.30621 6.35432 6.42166 6.48062 6.55174 6.63763 6.76663 6.83421 7.03239 7.29028 7.34248 7.45063 7.50489 7.60998 7.75191 7.98461 8.38775 8.95703 9.31950 9.74785 10.58589 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014676 B = 0.004052 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.412013 B = 6908.579820 C = 8009.724024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.111 4.111 4 C 0.092 3.908 5 H 0.055 0.945 6 C -0.131 4.131 7 C -0.089 4.089 8 H 0.090 0.910 9 C 0.478 3.522 10 O -0.590 6.590 11 N -0.411 5.411 12 C -0.352 4.352 13 H 0.099 0.901 14 C 0.047 3.953 15 N -0.847 5.847 16 Si 0.916 3.084 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.269 1.269 20 C 0.240 3.760 21 C -0.085 4.085 22 C -0.118 4.118 23 C -0.152 4.152 24 C -0.120 4.120 25 C -0.124 4.124 26 C -0.137 4.137 27 C 0.066 3.934 28 O -0.382 6.382 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.272 0.728 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.108 0.892 44 H 0.085 0.915 45 H 0.068 0.932 46 H 0.049 0.951 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.640 -5.425 -0.171 9.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.148 4.148 4 C 0.035 3.965 5 H 0.073 0.927 6 C -0.169 4.169 7 C -0.110 4.110 8 H 0.108 0.892 9 C 0.267 3.733 10 O -0.474 6.474 11 N -0.126 5.126 12 C -0.478 4.478 13 H 0.117 0.883 14 C -0.161 4.161 15 N -0.482 5.482 16 Si 0.743 3.257 17 H -0.202 1.202 18 H -0.208 1.208 19 H -0.193 1.193 20 C 0.149 3.851 21 C -0.104 4.104 22 C -0.137 4.137 23 C -0.171 4.171 24 C -0.139 4.139 25 C -0.144 4.144 26 C -0.175 4.175 27 C -0.010 4.010 28 O -0.301 6.301 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.126 0.874 44 H 0.104 0.896 45 H 0.087 0.913 46 H 0.067 0.933 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.875 -5.033 0.271 9.350 hybrid contribution 1.264 -0.474 -0.867 1.604 sum -6.612 -5.506 -0.595 8.625 Atomic orbital electron populations 1.21784 0.96235 1.01263 1.01658 1.21483 0.95272 0.96871 1.02330 1.21627 0.93090 0.97310 1.02783 1.22125 0.94150 0.93300 0.86965 0.92733 1.22062 0.94922 0.96526 1.03393 1.21052 0.95106 0.95190 0.99638 0.89166 1.20225 0.82731 0.90214 0.80079 1.90565 1.58153 1.47334 1.51319 1.41321 1.14834 1.05274 1.51164 1.19526 0.88521 0.99962 1.39766 0.88312 1.25290 0.96979 0.97657 0.96153 1.69888 1.10676 1.31286 1.36354 0.86092 0.79311 0.80546 0.79794 1.20233 1.20781 1.19345 1.17224 0.91594 0.83889 0.92397 1.20759 0.98027 0.94690 0.96936 1.20690 1.00937 0.94827 0.97213 1.20713 1.04188 0.99300 0.92873 1.20674 1.01057 0.95186 0.96944 1.20915 1.01833 0.94140 0.97513 1.21994 1.02289 0.96091 0.97114 1.22545 0.80727 0.96105 1.01651 1.87855 1.21192 1.82346 1.38706 0.92794 0.92954 0.93045 0.92387 0.91265 0.91098 0.90766 0.90187 0.91341 0.91723 0.87859 0.87604 0.87793 0.87643 0.87399 0.89633 0.91286 0.93257 0.89109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.91 37.16 0.37 -1.01 16 2 C -0.12 -1.29 5.83 -26.73 -0.16 -1.45 16 3 C -0.11 -1.33 4.92 -26.73 -0.13 -1.46 16 4 C 0.09 1.31 2.64 -26.68 -0.07 1.24 16 5 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 6 C -0.13 -2.21 4.33 -26.59 -0.12 -2.32 16 7 C -0.09 -1.68 2.03 -91.59 -0.19 -1.87 16 8 H 0.09 1.69 6.06 -51.93 -0.31 1.37 16 9 C 0.48 11.22 6.57 -10.98 -0.07 11.14 16 10 O -0.59 -15.32 15.78 5.56 0.09 -15.23 16 11 N -0.41 -10.10 2.69 -58.98 -0.16 -10.25 16 12 C -0.35 -8.45 8.86 -14.93 -0.13 -8.59 16 13 H 0.10 2.23 5.98 -52.49 -0.31 1.92 16 14 C 0.05 1.14 5.19 -17.49 -0.09 1.05 16 15 N -0.85 -21.64 10.83 55.49 0.60 -21.04 16 16 Si 0.92 18.86 29.57 -169.99 -5.03 13.83 16 17 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 18 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 19 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 20 C 0.24 5.95 2.58 -83.69 -0.22 5.73 16 21 C -0.08 -2.02 8.81 -39.37 -0.35 -2.37 16 22 C -0.12 -2.46 10.04 -39.61 -0.40 -2.86 16 23 C -0.15 -2.98 10.04 -39.53 -0.40 -3.37 16 24 C -0.12 -2.44 10.04 -39.61 -0.40 -2.84 16 25 C -0.12 -2.87 9.50 -39.37 -0.37 -3.25 16 26 C -0.14 -2.38 5.40 -26.59 -0.14 -2.52 16 27 C 0.07 0.96 6.84 37.20 0.25 1.21 16 28 O -0.38 -5.80 9.94 -35.23 -0.35 -6.15 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.79 7.82 -51.93 -0.41 0.39 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.08 1.48 7.76 -51.93 -0.40 1.08 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.27 6.73 8.32 -40.82 -0.34 6.39 16 39 H 0.10 2.53 8.06 -52.48 -0.42 2.11 16 40 H 0.11 1.89 8.06 -52.49 -0.42 1.47 16 41 H 0.10 1.69 8.06 -52.49 -0.42 1.26 16 42 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 43 H 0.11 2.44 8.06 -52.48 -0.42 2.02 16 44 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 45 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 46 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 377.60 15.07 5.69 5.69 Total: -1.00 -28.45 377.60 -9.52 -37.97 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -7.76 Total: 8.70 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -2.60 Total: -13.52 kcal Atomic # 7 Polarization: -31.74 SS G_CDS: 0.44 Total: -31.30 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.26 Total: -21.38 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -28.45 -9.52 -37.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183550103.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.982 kcal (2) G-P(sol) polarization free energy of solvation -28.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds