Wall clock time and date at job start Tue Mar 31 2020 12:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47310 * 2 1 4 4 C 1.53000 * 109.47310 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.48013 * 55.02577 * 4 3 2 6 6 C 1.53092 * 109.48141 * 175.05458 * 4 3 2 7 7 C 1.53173 * 109.16526 * 177.58998 * 6 4 3 8 8 H 1.09003 * 109.61419 * 62.93197 * 7 6 4 9 9 C 1.50703 * 109.54401 * 183.15218 * 7 6 4 10 10 O 1.21273 * 120.00198 * 28.03378 * 9 7 6 11 11 N 1.34777 * 119.99639 * 208.03432 * 9 7 6 12 12 C 1.37144 * 120.00366 * 4.00712 * 11 9 7 13 13 H 1.07998 * 119.99794 * 24.84938 * 12 11 9 14 14 C 1.38892 * 119.99945 * 204.84402 * 12 11 9 15 15 N 1.31415 * 119.99985 * 10.57776 * 14 12 11 16 16 Si 1.86798 * 119.99605 * 190.57512 * 14 12 11 17 17 H 1.48508 * 109.47023 * 90.00506 * 16 14 12 18 18 H 1.48500 * 109.47148 * 209.99935 * 16 14 12 19 19 H 1.48494 * 109.47451 * 330.00181 * 16 14 12 20 20 C 1.39796 * 119.99652 * 184.01712 * 11 9 7 21 21 C 1.38952 * 120.08014 * 66.36128 * 20 11 9 22 22 C 1.38089 * 119.91972 * 179.97438 * 21 20 11 23 23 C 1.38305 * 120.07671 * 0.02562 * 22 21 20 24 24 C 1.38301 * 120.16015 * 0.25623 * 23 22 21 25 25 C 1.38089 * 120.07321 * 359.48389 * 24 23 22 26 26 C 1.53177 * 109.03626 * 303.02211 * 7 6 4 27 27 C 1.53089 * 109.16241 * 56.98102 * 26 7 6 28 28 O 1.42897 * 109.48197 * 294.99636 * 4 3 2 29 29 H 1.09004 * 109.47212 * 300.00292 * 1 2 3 30 30 H 1.09002 * 109.46961 * 59.99987 * 1 2 3 31 31 H 1.09003 * 109.47256 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46786 * 239.99777 * 2 1 3 33 33 H 1.09002 * 109.46961 * 120.00012 * 2 1 3 34 34 H 1.09004 * 109.47222 * 59.99713 * 3 2 1 35 35 H 1.09005 * 109.47014 * 300.00437 * 3 2 1 36 36 H 1.09006 * 109.52470 * 57.68612 * 6 4 3 37 37 H 1.09002 * 109.52611 * 297.49904 * 6 4 3 38 38 H 0.96998 * 119.99860 * 184.97880 * 15 14 12 39 39 H 1.08004 * 120.04214 * 359.96301 * 21 20 11 40 40 H 1.08001 * 119.95721 * 180.02562 * 22 21 20 41 41 H 1.08001 * 119.91854 * 179.97438 * 23 22 21 42 42 H 1.07998 * 119.96669 * 179.71997 * 24 23 22 43 43 H 1.08003 * 120.03657 * 180.25151 * 25 24 23 44 44 H 1.09004 * 109.52097 * 176.88174 * 26 7 6 45 45 H 1.08993 * 109.52115 * 297.01041 * 26 7 6 46 46 H 1.08999 * 109.48460 * 62.37475 * 27 26 7 47 47 H 1.08998 * 109.48218 * 182.39703 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9339 0.8533 -0.8412 6 6 4.0806 2.8803 -0.1238 7 6 5.6111 2.8776 -0.0618 8 1 6.0106 2.3204 -0.9092 9 6 6.1200 4.2954 -0.1057 10 8 5.4331 5.1997 0.3199 11 7 7.3385 4.5584 -0.6181 12 6 8.0812 3.5484 -1.1741 13 1 7.5900 2.6716 -1.5693 14 6 9.4651 3.6533 -1.2291 15 7 10.0781 4.6108 -0.5700 16 14 10.4548 2.4333 -2.2398 17 1 10.6093 2.9478 -3.6243 18 1 11.7950 2.2541 -1.6260 19 1 9.7469 1.1284 -2.2727 20 6 7.8454 5.8607 -0.5825 21 6 8.1523 6.4556 0.6351 22 6 8.6534 7.7420 0.6664 23 6 8.8493 8.4383 -0.5124 24 6 8.5395 7.8515 -1.7258 25 6 8.0431 6.5635 -1.7649 26 6 6.0571 2.2133 1.2444 27 6 5.4702 0.8011 1.3159 28 8 4.0461 0.8734 1.2219 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 3.6840 3.4799 0.6956 37 1 3.7553 3.3014 -1.0751 38 1 11.0362 4.7288 -0.6654 39 1 7.9990 5.9126 1.5561 40 1 8.8925 8.2048 1.6124 41 1 9.2409 9.4445 -0.4850 42 1 8.6895 8.3998 -2.6441 43 1 7.8052 6.1043 -2.7131 44 1 7.1453 2.1572 1.2714 45 1 5.7013 2.7999 2.0913 46 1 5.8591 0.2036 0.4913 47 1 5.7492 0.3390 2.2628 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183550103.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:19 Heat of formation + Delta-G solvation = -82.218165 kcal Electronic energy + Delta-G solvation = -27466.920318 eV Core-core repulsion = 23806.435350 eV Total energy + Delta-G solvation = -3660.484967 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.55418 -40.25352 -38.86613 -36.63283 -35.88994 -34.53388 -33.56828 -32.13704 -31.58807 -30.60289 -28.21194 -26.93754 -25.99890 -23.88308 -23.34784 -23.13385 -21.92803 -21.47426 -20.77854 -19.25064 -18.16144 -17.43272 -17.29989 -16.83029 -16.60943 -16.16726 -16.11132 -15.71504 -15.37424 -15.18673 -15.03155 -14.88304 -14.39793 -14.19456 -14.11608 -13.60027 -13.59415 -13.45575 -13.30567 -13.03426 -12.88499 -12.85258 -12.43799 -12.29387 -12.23824 -12.17610 -11.98769 -11.95020 -11.82221 -11.51451 -11.44494 -11.22343 -11.15399 -10.70363 -10.17456 -10.08757 -9.58580 -9.23170 -8.10752 -6.04079 0.74498 0.78227 1.40616 1.46186 1.55871 1.91634 2.26694 2.78641 2.89134 3.04189 3.29575 3.72997 3.86149 3.89508 4.01759 4.16502 4.19603 4.23038 4.26269 4.34395 4.35560 4.37851 4.49132 4.53860 4.68013 4.73779 4.76857 4.79217 4.85545 4.87238 4.89718 5.00403 5.06581 5.10532 5.14930 5.18126 5.29794 5.32396 5.33567 5.43040 5.45322 5.54210 5.65138 5.76288 5.83653 6.00502 6.24429 6.32422 6.56357 7.09010 7.48542 7.90993 8.74281 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014676 B = 0.004052 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.412013 B = 6908.579820 C = 8009.724024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C -0.109 4.109 4 C 0.096 3.904 5 H 0.070 0.930 6 C -0.124 4.124 7 C -0.084 4.084 8 H 0.096 0.904 9 C 0.463 3.537 10 O -0.626 6.626 11 N -0.420 5.420 12 C -0.363 4.363 13 H 0.111 0.889 14 C 0.008 3.992 15 N -0.875 5.875 16 Si 0.981 3.019 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.253 1.253 20 C 0.213 3.787 21 C -0.114 4.114 22 C -0.119 4.119 23 C -0.146 4.146 24 C -0.116 4.116 25 C -0.149 4.149 26 C -0.130 4.130 27 C 0.072 3.928 28 O -0.388 6.388 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.085 0.915 36 H 0.056 0.944 37 H 0.069 0.931 38 H 0.268 0.732 39 H 0.079 0.921 40 H 0.134 0.866 41 H 0.148 0.852 42 H 0.141 0.859 43 H 0.102 0.898 44 H 0.071 0.929 45 H 0.049 0.951 46 H 0.066 0.934 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.557 -6.277 -1.344 9.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.146 4.146 4 C 0.039 3.961 5 H 0.088 0.912 6 C -0.162 4.162 7 C -0.105 4.105 8 H 0.114 0.886 9 C 0.254 3.746 10 O -0.513 6.513 11 N -0.134 5.134 12 C -0.489 4.489 13 H 0.128 0.872 14 C -0.197 4.197 15 N -0.510 5.510 16 Si 0.805 3.195 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.177 1.177 20 C 0.122 3.878 21 C -0.134 4.134 22 C -0.138 4.138 23 C -0.164 4.164 24 C -0.134 4.134 25 C -0.169 4.169 26 C -0.169 4.169 27 C -0.004 4.004 28 O -0.307 6.307 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.104 0.896 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.152 0.848 41 H 0.166 0.834 42 H 0.159 0.841 43 H 0.120 0.880 44 H 0.089 0.911 45 H 0.068 0.932 46 H 0.084 0.916 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.800 -5.897 -0.905 9.820 hybrid contribution 1.262 -0.077 -0.474 1.350 sum -6.538 -5.974 -1.379 8.963 Atomic orbital electron populations 1.21767 0.95011 1.02084 1.01896 1.21441 0.96330 0.95491 1.02264 1.21643 0.91399 0.98607 1.02948 1.22198 0.95548 0.91203 0.87178 0.91246 1.22021 0.93272 0.98449 1.02457 1.21076 0.96469 0.92374 1.00552 0.88608 1.21059 0.82389 0.91777 0.79327 1.90515 1.59040 1.48859 1.52872 1.41591 1.15117 1.05725 1.51000 1.19885 0.88947 1.00338 1.39711 0.87201 1.26087 0.97662 0.99113 0.96862 1.70051 1.10498 1.32952 1.37495 0.85099 0.77493 0.79064 0.77878 1.20270 1.21277 1.17662 1.17549 0.92601 0.84410 0.93252 1.20781 1.00398 0.96365 0.95874 1.21079 0.99582 0.93699 0.99394 1.21188 1.02630 1.00873 0.91744 1.21121 0.99195 0.94128 0.98983 1.21068 1.03395 0.95710 0.96708 1.21944 1.01454 0.97973 0.95499 1.22597 0.80306 0.93873 1.03631 1.87867 1.21444 1.82083 1.39300 0.93001 0.92321 0.91948 0.91586 0.92159 0.91996 0.89627 0.92536 0.91277 0.92160 0.90310 0.84812 0.83419 0.84074 0.88002 0.91078 0.93189 0.91593 0.86861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.91 71.98 0.71 -1.70 16 2 C -0.12 -2.26 5.83 30.59 0.18 -2.09 16 3 C -0.11 -2.47 4.92 30.59 0.15 -2.32 16 4 C 0.10 2.63 2.64 30.62 0.08 2.71 16 5 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 6 C -0.12 -4.24 4.33 30.68 0.13 -4.11 16 7 C -0.08 -3.26 2.03 -11.42 -0.02 -3.28 16 8 H 0.10 3.58 6.06 -2.39 -0.01 3.57 16 9 C 0.46 22.81 6.57 87.66 0.58 23.39 16 10 O -0.63 -34.43 15.78 -3.01 -0.05 -34.48 16 11 N -0.42 -21.46 2.69 -458.90 -1.23 -22.70 16 12 C -0.36 -17.77 8.86 84.02 0.74 -17.02 16 13 H 0.11 4.97 5.98 -2.91 -0.02 4.95 16 14 C 0.01 0.37 5.19 84.91 0.44 0.81 16 15 N -0.87 -45.52 10.83 21.65 0.23 -45.28 16 16 Si 0.98 38.39 29.57 68.60 2.03 40.42 16 17 H -0.28 -10.80 7.11 99.48 0.71 -10.10 16 18 H -0.29 -11.37 7.11 99.48 0.71 -10.67 16 19 H -0.25 -9.17 7.11 99.48 0.71 -8.47 16 20 C 0.21 10.91 2.58 38.22 0.10 11.01 16 21 C -0.11 -5.69 8.81 22.41 0.20 -5.49 16 22 C -0.12 -4.91 10.04 22.25 0.22 -4.68 16 23 C -0.15 -5.38 10.04 22.30 0.22 -5.16 16 24 C -0.12 -4.53 10.04 22.25 0.22 -4.31 16 25 C -0.15 -6.99 9.50 22.41 0.21 -6.78 16 26 C -0.13 -4.64 5.40 30.68 0.17 -4.48 16 27 C 0.07 1.99 6.84 72.01 0.49 2.49 16 28 O -0.39 -11.29 9.94 -148.98 -1.48 -12.77 16 29 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.06 1.27 7.82 -2.39 -0.02 1.26 16 34 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 35 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 36 H 0.06 2.19 7.76 -2.38 -0.02 2.17 16 37 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.27 13.48 8.32 -92.71 -0.77 12.71 16 39 H 0.08 4.15 8.06 -2.91 -0.02 4.12 16 40 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 41 H 0.15 4.14 8.06 -2.91 -0.02 4.11 16 42 H 0.14 4.42 8.06 -2.91 -0.02 4.39 16 43 H 0.10 4.74 8.06 -2.91 -0.02 4.71 16 44 H 0.07 2.71 8.14 -2.38 -0.02 2.69 16 45 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 47 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 Total: -1.00 -64.00 377.60 5.26 -58.73 By element: Atomic # 1 Polarization: 36.16 SS G_CDS: 0.93 Total: 37.09 kcal Atomic # 6 Polarization: -25.84 SS G_CDS: 4.83 Total: -21.01 kcal Atomic # 7 Polarization: -66.98 SS G_CDS: -1.00 Total: -67.98 kcal Atomic # 8 Polarization: -45.72 SS G_CDS: -1.53 Total: -47.25 kcal Atomic # 14 Polarization: 38.39 SS G_CDS: 2.03 Total: 40.42 kcal Total: -64.00 5.26 -58.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183550103.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.484 kcal (2) G-P(sol) polarization free energy of solvation -63.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds