Wall clock time and date at job start Tue Mar 31 2020 12:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46639 * 2 1 4 4 C 1.52997 * 109.46889 * 185.14766 * 3 2 1 5 5 H 1.09000 * 109.59058 * 61.74595 * 4 3 2 6 6 C 1.53202 * 109.70149 * 301.39201 * 4 3 2 7 7 C 1.53038 * 109.30930 * 185.50835 * 6 4 3 8 8 C 1.53042 * 109.53848 * 61.36709 * 7 6 4 9 9 C 1.53618 * 109.24145 * 298.50520 * 8 7 6 10 10 N 1.46927 * 109.58660 * 182.03407 * 4 3 2 11 11 C 1.34779 * 120.63059 * 353.51421 * 10 4 3 12 12 O 1.21594 * 119.99866 * 354.61014 * 11 10 4 13 13 C 1.47529 * 119.99839 * 174.61499 * 11 10 4 14 14 C 1.39665 * 120.19692 * 325.21474 * 13 11 10 15 15 C 1.37834 * 119.91771 * 179.97438 * 14 13 11 16 16 C 1.38572 * 120.32549 * 0.25029 * 15 14 13 17 17 C 1.38021 * 120.39726 * 359.48806 * 16 15 14 18 18 C 1.38840 * 120.07657 * 0.51732 * 17 16 15 19 19 O 1.35509 * 120.16374 * 179.71952 * 18 17 16 20 20 C 1.34817 * 117.00231 * 5.74297 * 19 18 17 21 21 H 1.08006 * 120.00289 * 5.16097 * 20 19 18 22 22 C 1.38703 * 120.00481 * 185.15510 * 20 19 18 23 23 N 1.31516 * 119.99530 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00112 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46887 * 90.00404 * 24 22 20 26 26 H 1.48494 * 109.47112 * 210.00035 * 24 22 20 27 27 H 1.48493 * 109.47323 * 330.00625 * 24 22 20 28 28 H 1.09001 * 109.47381 * 299.99980 * 1 2 3 29 29 H 1.09003 * 109.47370 * 60.00144 * 1 2 3 30 30 H 1.09001 * 109.46765 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46882 * 240.00525 * 2 1 3 32 32 H 1.08993 * 109.46962 * 119.99517 * 2 1 3 33 33 H 1.08998 * 109.47402 * 65.14160 * 3 2 1 34 34 H 1.09006 * 109.46955 * 305.14467 * 3 2 1 35 35 H 1.09001 * 109.49529 * 305.46037 * 6 4 3 36 36 H 1.08999 * 109.49291 * 65.55988 * 6 4 3 37 37 H 1.09007 * 109.45818 * 181.38621 * 7 6 4 38 38 H 1.08994 * 109.46362 * 301.34492 * 7 6 4 39 39 H 1.09003 * 109.50018 * 58.58733 * 8 7 6 40 40 H 1.09000 * 109.49736 * 178.64912 * 8 7 6 41 41 H 1.08997 * 109.74407 * 295.12259 * 9 8 7 42 42 H 1.09003 * 109.66187 * 174.54794 * 9 8 7 43 43 H 1.07997 * 120.04408 * 359.95693 * 14 13 11 44 44 H 1.07998 * 119.83252 * 179.97438 * 15 14 13 45 45 H 1.07995 * 119.79558 * 179.75039 * 16 15 14 46 46 H 1.07999 * 119.96209 * 180.23452 * 17 16 15 47 47 H 0.96998 * 119.99923 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5644 1.4446 -0.1294 5 1 3.8515 0.9862 -1.0758 6 6 4.1823 0.6575 1.0307 7 6 5.7065 0.7801 0.9703 8 6 6.1080 2.2498 1.1158 9 6 5.5121 3.0550 -0.0489 10 7 4.0611 2.8265 -0.0808 11 6 3.2020 3.8650 -0.0713 12 8 2.0092 3.6685 -0.2018 13 6 3.7090 5.2401 0.0974 14 6 4.8119 5.4865 0.9180 15 6 5.2811 6.7735 1.0711 16 6 4.6606 7.8266 0.4184 17 6 3.5730 7.5976 -0.4000 18 6 3.0865 6.3079 -0.5659 19 8 2.0153 6.0817 -1.3645 20 6 1.5402 7.1322 -2.0633 21 1 2.0605 8.0783 -2.0369 22 6 0.3831 6.9980 -2.8164 23 7 -0.2507 5.8462 -2.8483 24 14 -0.2755 8.4538 -3.7840 25 1 0.3150 8.4504 -5.1466 26 1 -1.7536 8.3531 -3.8849 27 1 0.0886 9.7151 -3.0900 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 1.7537 1.9291 0.9324 34 1 1.6032 1.9823 -0.8404 35 1 3.8219 1.0612 1.9769 36 1 3.8982 -0.3918 0.9504 37 1 6.1498 0.2007 1.7803 38 1 6.0640 0.3990 0.0138 39 1 5.7296 2.6384 2.0613 40 1 7.1946 2.3337 1.0968 41 1 5.9547 2.7253 -0.9888 42 1 5.7118 4.1163 0.0990 43 1 5.2964 4.6697 1.4323 44 1 6.1338 6.9625 1.7063 45 1 5.0329 8.8321 0.5476 46 1 3.0971 8.4231 -0.9083 47 1 -1.0597 5.7522 -3.3753 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183903713.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:15 Heat of formation + Delta-G solvation = -22.300115 kcal Electronic energy + Delta-G solvation = -27890.137572 eV Core-core repulsion = 24232.250847 eV Total energy + Delta-G solvation = -3657.886726 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.35626 -38.77483 -36.70992 -36.51049 -34.80703 -32.58033 -32.33360 -31.25396 -29.85663 -28.99535 -26.78266 -25.42149 -24.45244 -23.34711 -22.23434 -21.56423 -20.67184 -20.33639 -18.83485 -18.08965 -17.02283 -16.22654 -15.68905 -15.08067 -14.89441 -14.71600 -14.37683 -14.27457 -14.00758 -13.92490 -13.78679 -13.38914 -13.28493 -13.08281 -12.75028 -12.46596 -12.40502 -12.19663 -11.71390 -11.64282 -11.35850 -11.32321 -11.20685 -10.98427 -10.90917 -10.88653 -10.79472 -10.73189 -10.48912 -10.33317 -10.19402 -10.10754 -9.50341 -8.87491 -8.35203 -8.10538 -8.02678 -7.31301 -6.45335 -4.05337 1.75795 2.29228 3.11591 3.12445 3.17318 3.47492 3.65976 3.93277 4.54237 4.78078 4.87350 4.90792 5.07886 5.13197 5.14332 5.21467 5.37743 5.40241 5.44080 5.49505 5.52538 5.64237 5.69026 5.74798 5.82843 5.91004 5.92360 5.96849 6.03696 6.04635 6.11582 6.16056 6.18649 6.21286 6.24660 6.37145 6.50923 6.56276 6.67251 6.76454 6.87956 6.98776 7.04539 7.23586 7.26330 7.30416 7.68936 7.91795 8.06130 8.95436 9.07912 9.66288 10.69282 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011560 B = 0.005094 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.653940 B = 5495.460194 C = 7569.360785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.129 4.129 3 C -0.113 4.113 4 C 0.153 3.847 5 H 0.062 0.938 6 C -0.131 4.131 7 C -0.118 4.118 8 C -0.136 4.136 9 C 0.083 3.917 10 N -0.616 5.616 11 C 0.567 3.433 12 O -0.500 6.500 13 C -0.223 4.223 14 C -0.052 4.052 15 C -0.229 4.229 16 C -0.054 4.054 17 C -0.236 4.236 18 C 0.190 3.810 19 O -0.137 6.137 20 C -0.402 4.402 21 H 0.093 0.907 22 C 0.045 3.955 23 N -0.838 5.838 24 Si 0.940 3.060 25 H -0.272 1.272 26 H -0.276 1.276 27 H -0.266 1.266 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.045 0.955 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.101 0.899 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.059 0.941 42 H 0.113 0.887 43 H 0.126 0.874 44 H 0.110 0.890 45 H 0.110 0.890 46 H 0.131 0.869 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.102 -7.475 6.443 14.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.167 4.167 3 C -0.150 4.150 4 C 0.050 3.950 5 H 0.080 0.920 6 C -0.170 4.170 7 C -0.156 4.156 8 C -0.174 4.174 9 C -0.040 4.040 10 N -0.352 5.352 11 C 0.358 3.642 12 O -0.375 6.375 13 C -0.227 4.227 14 C -0.070 4.070 15 C -0.248 4.248 16 C -0.072 4.072 17 C -0.255 4.255 18 C 0.131 3.869 19 O -0.036 6.036 20 C -0.477 4.477 21 H 0.111 0.889 22 C -0.163 4.163 23 N -0.470 5.470 24 Si 0.765 3.235 25 H -0.198 1.198 26 H -0.201 1.201 27 H -0.191 1.191 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.120 0.880 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.077 0.923 42 H 0.131 0.869 43 H 0.143 0.857 44 H 0.128 0.872 45 H 0.128 0.872 46 H 0.149 0.851 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.026 -7.892 6.178 14.176 hybrid contribution -0.092 0.798 -0.420 0.906 sum 9.934 -7.094 5.758 13.497 Atomic orbital electron populations 1.21707 0.95930 1.00489 1.02420 1.21711 0.96145 0.98062 1.00757 1.22215 0.92450 0.94631 1.05734 1.21174 0.95197 0.81454 0.97163 0.92002 1.22051 0.95241 1.00270 0.99406 1.21504 0.96060 0.96317 1.01673 1.22006 1.00326 0.95823 0.99234 1.22410 0.80631 1.03101 0.97854 1.47955 1.05966 1.05381 1.75909 1.18202 0.85854 0.84088 0.76104 1.90870 1.15430 1.83974 1.47217 1.18867 1.02281 0.91938 1.09646 1.21004 0.93299 0.96723 0.95998 1.20495 1.04188 0.92808 1.07298 1.20889 0.94091 0.98029 0.94206 1.21157 1.01335 0.96905 1.06121 1.19229 0.87483 0.91604 0.88586 1.84093 1.36117 1.36341 1.47058 1.21430 1.09579 0.91310 1.25424 0.88949 1.25358 0.95267 0.98255 0.97395 1.70099 1.16760 1.23309 1.36786 0.85731 0.78424 0.79856 0.79523 1.19793 1.20145 1.19086 0.92884 0.92374 0.93583 0.92744 0.92838 0.91384 0.88034 0.91657 0.91030 0.92136 0.92013 0.91541 0.91102 0.92258 0.86941 0.85677 0.87239 0.87214 0.85108 0.91878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.91 37.16 0.37 -1.72 16 2 C -0.13 -1.78 5.40 -26.73 -0.14 -1.93 16 3 C -0.11 -1.96 3.18 -26.73 -0.09 -2.05 16 4 C 0.15 2.35 3.02 -67.60 -0.20 2.15 16 5 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 6 C -0.13 -1.57 4.82 -26.61 -0.13 -1.70 16 7 C -0.12 -1.20 5.88 -26.69 -0.16 -1.35 16 8 C -0.14 -1.43 5.77 -26.39 -0.15 -1.58 16 9 C 0.08 1.12 5.56 -3.49 -0.02 1.10 16 10 N -0.62 -10.61 2.97 -166.17 -0.49 -11.10 16 11 C 0.57 12.48 7.10 -12.47 -0.09 12.39 16 12 O -0.50 -12.98 11.47 -12.54 -0.14 -13.13 16 13 C -0.22 -4.83 5.43 -104.81 -0.57 -5.40 16 14 C -0.05 -0.90 7.38 -39.20 -0.29 -1.19 16 15 C -0.23 -3.72 10.03 -39.61 -0.40 -4.12 16 16 C -0.05 -0.94 10.03 -39.54 -0.40 -1.34 16 17 C -0.24 -5.05 9.13 -39.44 -0.36 -5.41 16 18 C 0.19 4.68 6.62 -38.60 -0.26 4.43 16 19 O -0.14 -4.00 8.39 -17.00 -0.14 -4.15 16 20 C -0.40 -11.30 9.45 30.90 0.29 -11.01 16 21 H 0.09 2.37 5.29 -52.48 -0.28 2.09 16 22 C 0.04 1.23 5.49 -17.52 -0.10 1.14 16 23 N -0.84 -25.06 13.67 55.48 0.76 -24.30 16 24 Si 0.94 20.51 29.55 -169.99 -5.02 15.49 16 25 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 26 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 27 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.65 6.85 -51.93 -0.36 0.29 16 33 H 0.07 1.32 7.21 -51.93 -0.37 0.94 16 34 H 0.10 2.21 6.26 -51.93 -0.33 1.89 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.75 6.87 -51.93 -0.36 0.40 16 37 H 0.06 0.53 8.14 -51.92 -0.42 0.10 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.73 7.65 -51.93 -0.40 0.33 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.11 1.58 3.56 -51.93 -0.18 1.40 16 43 H 0.13 1.79 5.14 -52.49 -0.27 1.53 16 44 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 45 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 46 H 0.13 2.78 5.71 -52.49 -0.30 2.48 16 47 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 361.94 15.07 5.45 5.45 Total: -1.00 -32.52 361.94 -9.32 -41.84 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -7.05 Total: 7.49 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: -2.68 Total: -17.59 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 0.27 Total: -35.41 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.29 Total: -17.27 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.52 -9.32 -41.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183903713.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.538 kcal (2) G-P(sol) polarization free energy of solvation -32.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds