Wall clock time and date at job start Tue Mar 31 2020 12:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46639 * 2 1 4 4 C 1.52997 * 109.46889 * 185.14766 * 3 2 1 5 5 H 1.09000 * 109.59058 * 61.74595 * 4 3 2 6 6 C 1.53202 * 109.70149 * 301.39201 * 4 3 2 7 7 C 1.53038 * 109.30930 * 185.50835 * 6 4 3 8 8 C 1.53042 * 109.53848 * 61.36709 * 7 6 4 9 9 C 1.53618 * 109.24145 * 298.50520 * 8 7 6 10 10 N 1.46927 * 109.58660 * 182.03407 * 4 3 2 11 11 C 1.34779 * 120.63059 * 353.51421 * 10 4 3 12 12 O 1.21594 * 119.99866 * 354.61014 * 11 10 4 13 13 C 1.47529 * 119.99839 * 174.61499 * 11 10 4 14 14 C 1.39665 * 120.19692 * 325.21474 * 13 11 10 15 15 C 1.37834 * 119.91771 * 179.97438 * 14 13 11 16 16 C 1.38572 * 120.32549 * 0.25029 * 15 14 13 17 17 C 1.38021 * 120.39726 * 359.48806 * 16 15 14 18 18 C 1.38840 * 120.07657 * 0.51732 * 17 16 15 19 19 O 1.35509 * 120.16374 * 179.71952 * 18 17 16 20 20 C 1.34817 * 117.00231 * 5.74297 * 19 18 17 21 21 H 1.08006 * 120.00289 * 5.16097 * 20 19 18 22 22 C 1.38703 * 120.00481 * 185.15510 * 20 19 18 23 23 N 1.31516 * 119.99530 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00112 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46887 * 90.00404 * 24 22 20 26 26 H 1.48494 * 109.47112 * 210.00035 * 24 22 20 27 27 H 1.48493 * 109.47323 * 330.00625 * 24 22 20 28 28 H 1.09001 * 109.47381 * 299.99980 * 1 2 3 29 29 H 1.09003 * 109.47370 * 60.00144 * 1 2 3 30 30 H 1.09001 * 109.46765 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46882 * 240.00525 * 2 1 3 32 32 H 1.08993 * 109.46962 * 119.99517 * 2 1 3 33 33 H 1.08998 * 109.47402 * 65.14160 * 3 2 1 34 34 H 1.09006 * 109.46955 * 305.14467 * 3 2 1 35 35 H 1.09001 * 109.49529 * 305.46037 * 6 4 3 36 36 H 1.08999 * 109.49291 * 65.55988 * 6 4 3 37 37 H 1.09007 * 109.45818 * 181.38621 * 7 6 4 38 38 H 1.08994 * 109.46362 * 301.34492 * 7 6 4 39 39 H 1.09003 * 109.50018 * 58.58733 * 8 7 6 40 40 H 1.09000 * 109.49736 * 178.64912 * 8 7 6 41 41 H 1.08997 * 109.74407 * 295.12259 * 9 8 7 42 42 H 1.09003 * 109.66187 * 174.54794 * 9 8 7 43 43 H 1.07997 * 120.04408 * 359.95693 * 14 13 11 44 44 H 1.07998 * 119.83252 * 179.97438 * 15 14 13 45 45 H 1.07995 * 119.79558 * 179.75039 * 16 15 14 46 46 H 1.07999 * 119.96209 * 180.23452 * 17 16 15 47 47 H 0.96998 * 119.99923 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5644 1.4446 -0.1294 5 1 3.8515 0.9862 -1.0758 6 6 4.1823 0.6575 1.0307 7 6 5.7065 0.7801 0.9703 8 6 6.1080 2.2498 1.1158 9 6 5.5121 3.0550 -0.0489 10 7 4.0611 2.8265 -0.0808 11 6 3.2020 3.8650 -0.0713 12 8 2.0092 3.6685 -0.2018 13 6 3.7090 5.2401 0.0974 14 6 4.8119 5.4865 0.9180 15 6 5.2811 6.7735 1.0711 16 6 4.6606 7.8266 0.4184 17 6 3.5730 7.5976 -0.4000 18 6 3.0865 6.3079 -0.5659 19 8 2.0153 6.0817 -1.3645 20 6 1.5402 7.1322 -2.0633 21 1 2.0605 8.0783 -2.0369 22 6 0.3831 6.9980 -2.8164 23 7 -0.2507 5.8462 -2.8483 24 14 -0.2755 8.4538 -3.7840 25 1 0.3150 8.4504 -5.1466 26 1 -1.7536 8.3531 -3.8849 27 1 0.0886 9.7151 -3.0900 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 1.7537 1.9291 0.9324 34 1 1.6032 1.9823 -0.8404 35 1 3.8219 1.0612 1.9769 36 1 3.8982 -0.3918 0.9504 37 1 6.1498 0.2007 1.7803 38 1 6.0640 0.3990 0.0138 39 1 5.7296 2.6384 2.0613 40 1 7.1946 2.3337 1.0968 41 1 5.9547 2.7253 -0.9888 42 1 5.7118 4.1163 0.0990 43 1 5.2964 4.6697 1.4323 44 1 6.1338 6.9625 1.7063 45 1 5.0329 8.8321 0.5476 46 1 3.0971 8.4231 -0.9083 47 1 -1.0597 5.7522 -3.3753 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183903713.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:14 Heat of formation + Delta-G solvation = -41.831537 kcal Electronic energy + Delta-G solvation = -27890.984518 eV Core-core repulsion = 24232.250847 eV Total energy + Delta-G solvation = -3658.733672 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.84718 -40.41004 -38.21158 -38.16673 -36.07513 -34.35324 -33.82377 -32.52381 -31.22847 -30.64231 -28.02908 -27.41087 -25.73498 -24.61992 -23.70945 -23.02358 -21.80691 -21.68054 -20.24771 -19.92712 -18.69318 -17.76184 -17.13789 -16.67608 -16.43637 -16.02430 -15.78444 -15.72850 -15.52520 -15.43490 -15.14993 -14.64191 -14.55853 -14.42786 -14.22109 -14.01340 -13.89288 -13.54518 -13.44646 -12.98091 -12.85079 -12.68912 -12.55938 -12.44065 -12.30873 -12.18349 -12.14500 -11.90697 -11.73449 -11.55412 -11.42424 -11.35634 -11.22020 -10.83429 -9.97562 -9.66312 -9.42503 -9.03950 -8.46958 -6.17753 0.17450 0.69465 1.30560 1.41933 1.49675 1.98700 2.13821 2.15538 2.83121 3.17034 3.42255 3.60393 3.86684 3.91914 4.01783 4.08158 4.10730 4.17473 4.22924 4.27171 4.30942 4.35618 4.51891 4.57341 4.60275 4.64794 4.74967 4.84206 4.92743 4.94998 4.99703 5.04023 5.05699 5.06808 5.10524 5.14506 5.19254 5.24376 5.27241 5.38638 5.47768 5.51744 5.55318 5.61063 5.68603 5.87894 5.94946 6.15774 6.56463 6.93272 7.46649 7.77902 8.74173 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011560 B = 0.005094 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.653940 B = 5495.460194 C = 7569.360785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C -0.102 4.102 4 C 0.147 3.853 5 H 0.067 0.933 6 C -0.122 4.122 7 C -0.115 4.115 8 C -0.128 4.128 9 C 0.073 3.927 10 N -0.610 5.610 11 C 0.552 3.448 12 O -0.559 6.559 13 C -0.239 4.239 14 C -0.044 4.044 15 C -0.196 4.196 16 C -0.044 4.044 17 C -0.254 4.254 18 C 0.148 3.852 19 O -0.202 6.202 20 C -0.423 4.423 21 H 0.106 0.894 22 C -0.023 4.023 23 N -0.909 5.909 24 Si 1.021 2.979 25 H -0.261 1.261 26 H -0.273 1.273 27 H -0.248 1.248 28 H 0.042 0.958 29 H 0.030 0.970 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.037 0.963 34 H 0.042 0.958 35 H 0.056 0.944 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.105 0.895 41 H 0.068 0.932 42 H 0.109 0.891 43 H 0.163 0.837 44 H 0.166 0.834 45 H 0.154 0.846 46 H 0.122 0.878 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.885 -7.655 8.782 19.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.140 4.140 4 C 0.044 3.956 5 H 0.085 0.915 6 C -0.160 4.160 7 C -0.153 4.153 8 C -0.166 4.166 9 C -0.048 4.048 10 N -0.344 5.344 11 C 0.343 3.657 12 O -0.438 6.438 13 C -0.244 4.244 14 C -0.062 4.062 15 C -0.215 4.215 16 C -0.062 4.062 17 C -0.273 4.273 18 C 0.093 3.907 19 O -0.105 6.105 20 C -0.499 4.499 21 H 0.123 0.877 22 C -0.221 4.221 23 N -0.546 5.546 24 Si 0.840 3.160 25 H -0.186 1.186 26 H -0.198 1.198 27 H -0.171 1.171 28 H 0.061 0.939 29 H 0.049 0.951 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.112 0.888 37 H 0.106 0.894 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.123 0.877 41 H 0.086 0.914 42 H 0.126 0.874 43 H 0.180 0.820 44 H 0.183 0.817 45 H 0.172 0.828 46 H 0.140 0.860 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 14.929 -8.077 8.564 19.012 hybrid contribution -1.214 0.805 -0.899 1.711 sum 13.715 -7.272 7.665 17.313 Atomic orbital electron populations 1.21726 0.96482 1.01851 1.00604 1.21658 0.95682 0.95617 1.02764 1.21887 0.94405 0.96109 1.01582 1.21374 0.93745 0.81084 0.99386 0.91524 1.21995 0.96850 1.00459 0.96707 1.21530 0.94041 0.96410 1.03274 1.22009 1.02038 0.95385 0.97186 1.22718 0.78149 1.03704 1.00204 1.48057 1.07272 1.05108 1.73935 1.18566 0.85740 0.85452 0.75968 1.90881 1.18052 1.84966 1.49867 1.19319 1.03527 0.91399 1.10132 1.21453 0.91440 0.98877 0.94389 1.21199 1.03955 0.91327 1.04971 1.21412 0.91985 1.00833 0.91966 1.21299 1.03064 0.95325 1.07618 1.19990 0.87229 0.94053 0.89391 1.84089 1.39054 1.37322 1.50053 1.21959 1.10140 0.91798 1.26007 0.87706 1.26736 0.95288 1.01590 0.98519 1.70299 1.18048 1.26502 1.39702 0.84566 0.77488 0.76000 0.77954 1.18600 1.19822 1.17105 0.93927 0.95119 0.90446 0.91308 0.89842 0.94404 0.93915 0.92544 0.88846 0.89400 0.91180 0.91550 0.87705 0.91381 0.87378 0.82008 0.81680 0.82796 0.85992 0.92078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.44 9.91 71.98 0.71 -3.73 16 2 C -0.12 -3.35 5.40 30.60 0.17 -3.19 16 3 C -0.10 -3.86 3.18 30.59 0.10 -3.76 16 4 C 0.15 4.54 3.02 44.98 0.14 4.68 16 5 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 6 C -0.12 -2.59 4.82 30.67 0.15 -2.45 16 7 C -0.12 -1.79 5.88 30.62 0.18 -1.61 16 8 C -0.13 -2.09 5.77 30.82 0.18 -1.92 16 9 C 0.07 1.81 5.56 86.50 0.48 2.29 16 10 N -0.61 -21.33 2.97 -797.91 -2.37 -23.70 16 11 C 0.55 26.01 7.10 86.69 0.62 26.63 16 12 O -0.56 -32.46 11.47 13.03 0.15 -32.31 16 13 C -0.24 -10.72 5.43 -19.99 -0.11 -10.83 16 14 C -0.04 -1.39 7.38 22.52 0.17 -1.22 16 15 C -0.20 -5.34 10.03 22.25 0.22 -5.11 16 16 C -0.04 -1.38 10.03 22.30 0.22 -1.16 16 17 C -0.25 -11.02 9.13 22.36 0.20 -10.81 16 18 C 0.15 7.73 6.62 22.91 0.15 7.88 16 19 O -0.20 -12.98 8.39 -2.92 -0.02 -13.00 16 20 C -0.42 -25.84 9.45 67.93 0.64 -25.20 16 21 H 0.11 5.76 5.29 -2.91 -0.02 5.74 16 22 C -0.02 -1.36 5.49 84.85 0.47 -0.89 16 23 N -0.91 -59.99 13.67 21.62 0.30 -59.69 16 24 Si 1.02 44.74 29.55 68.60 2.03 46.76 16 25 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 26 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 27 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 28 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.08 1.87 6.85 -2.39 -0.02 1.86 16 33 H 0.04 1.61 7.21 -2.39 -0.02 1.59 16 34 H 0.04 2.12 6.26 -2.38 -0.01 2.10 16 35 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.09 1.61 6.87 -2.39 -0.02 1.59 16 37 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.07 1.13 7.65 -2.39 -0.02 1.11 16 40 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.11 2.72 3.56 -2.39 -0.01 2.71 16 43 H 0.16 3.92 5.14 -2.91 -0.01 3.91 16 44 H 0.17 2.88 8.06 -2.91 -0.02 2.86 16 45 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 46 H 0.12 5.38 5.71 -2.91 -0.02 5.37 16 47 H 0.27 16.36 8.31 -92.71 -0.77 15.59 16 Total: -1.00 -86.53 361.94 5.73 -80.80 By element: Atomic # 1 Polarization: 30.56 SS G_CDS: 0.97 Total: 31.53 kcal Atomic # 6 Polarization: -35.07 SS G_CDS: 4.68 Total: -30.39 kcal Atomic # 7 Polarization: -81.32 SS G_CDS: -2.07 Total: -83.39 kcal Atomic # 8 Polarization: -45.44 SS G_CDS: 0.13 Total: -45.32 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -86.53 5.73 -80.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183903713.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.966 kcal (2) G-P(sol) polarization free energy of solvation -86.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds