Wall clock time and date at job start Tue Mar 31 2020 12:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47326 * 2 1 4 4 C 1.53001 * 109.47253 * 184.80320 * 3 2 1 5 5 H 1.09002 * 109.70054 * 298.68730 * 4 3 2 6 6 C 1.53628 * 109.66510 * 59.28112 * 4 3 2 7 7 C 1.53035 * 109.24189 * 174.54973 * 6 4 3 8 8 C 1.53039 * 109.54202 * 298.51422 * 7 6 4 9 9 C 1.53191 * 109.31291 * 61.36217 * 8 7 6 10 10 N 1.46925 * 109.58851 * 178.33175 * 4 3 2 11 11 C 1.34781 * 120.63164 * 6.63192 * 10 4 3 12 12 O 1.21594 * 119.99443 * 4.42038 * 11 10 4 13 13 C 1.47529 * 120.00053 * 184.15367 * 11 10 4 14 14 C 1.39667 * 120.19965 * 324.12717 * 13 11 10 15 15 C 1.37823 * 119.91736 * 179.71975 * 14 13 11 16 16 C 1.38566 * 120.32612 * 0.55751 * 15 14 13 17 17 C 1.38024 * 120.40072 * 359.71401 * 16 15 14 18 18 C 1.38833 * 120.07530 * 0.02562 * 17 16 15 19 19 O 1.35514 * 120.16255 * 180.02562 * 18 17 16 20 20 C 1.34812 * 117.00410 * 5.63478 * 19 18 17 21 21 H 1.07999 * 119.99590 * 354.94236 * 20 19 18 22 22 C 1.38698 * 120.00497 * 174.93778 * 20 19 18 23 23 N 1.31520 * 119.99753 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00197 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47348 * 90.00258 * 24 22 20 26 26 H 1.48497 * 109.47087 * 210.00059 * 24 22 20 27 27 H 1.48500 * 109.47223 * 329.99888 * 24 22 20 28 28 H 1.09000 * 109.47179 * 300.00279 * 1 2 3 29 29 H 1.08992 * 109.46874 * 60.00260 * 1 2 3 30 30 H 1.09002 * 109.47380 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47164 * 239.98979 * 2 1 3 32 32 H 1.09004 * 109.46541 * 119.99897 * 2 1 3 33 33 H 1.08997 * 109.47538 * 64.79920 * 3 2 1 34 34 H 1.08998 * 109.47024 * 304.79903 * 3 2 1 35 35 H 1.09001 * 109.63557 * 54.55736 * 6 4 3 36 36 H 1.09000 * 109.45649 * 294.43590 * 6 4 3 37 37 H 1.08999 * 109.46080 * 178.48719 * 7 6 4 38 38 H 1.09007 * 109.46088 * 58.52940 * 7 6 4 39 39 H 1.09001 * 109.49280 * 301.41155 * 8 7 6 40 40 H 1.08996 * 109.52724 * 181.33510 * 8 7 6 41 41 H 1.09004 * 109.58473 * 185.58329 * 9 8 7 42 42 H 1.08995 * 109.70079 * 65.22642 * 9 8 7 43 43 H 1.08004 * 120.03410 * 359.97438 * 14 13 11 44 44 H 1.07999 * 119.83628 * 180.24893 * 15 14 13 45 45 H 1.08006 * 119.80076 * 179.69792 * 16 15 14 46 46 H 1.08007 * 119.96311 * 179.97438 * 17 16 15 47 47 H 0.97000 * 120.00146 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5653 1.4441 -0.1208 5 1 4.0021 0.9269 0.7335 6 6 3.9817 0.7406 -1.4215 7 6 5.4963 0.8666 -1.6005 8 6 5.8777 2.3447 -1.7093 9 6 5.4818 3.0665 -0.4174 10 7 4.0547 2.8288 -0.1612 11 6 3.2116 3.8612 0.0387 12 8 2.0512 3.6500 0.3343 13 6 3.6982 5.2475 -0.0954 14 6 4.9933 5.5797 0.3083 15 6 5.4439 6.8753 0.1751 16 6 4.6141 7.8544 -0.3473 17 6 3.3299 7.5421 -0.7453 18 6 2.8607 6.2412 -0.6236 19 8 1.6003 5.9325 -1.0142 20 6 0.8918 6.9060 -1.6206 21 1 1.3022 7.9016 -1.7023 22 6 -0.3643 6.6290 -2.1396 23 7 -0.8643 5.4166 -2.0397 24 14 -1.3457 7.9777 -2.9804 25 1 -1.0238 7.9939 -4.4299 26 1 -2.7969 7.7206 -2.7986 27 1 -0.9968 9.2908 -2.3811 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5140 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 1.7487 1.9309 0.9298 34 1 1.6082 1.9804 -0.8439 35 1 3.4754 1.2055 -2.2676 36 1 3.7080 -0.3131 -1.3681 37 1 5.7992 0.3456 -2.5087 38 1 6.0015 0.4235 -0.7422 39 1 5.3537 2.7945 -2.5526 40 1 6.9535 2.4332 -1.8604 41 1 5.6601 4.1363 -0.5271 42 1 6.0715 2.6812 0.4143 43 1 5.6423 4.8211 0.7206 44 1 6.4470 7.1298 0.4839 45 1 4.9743 8.8681 -0.4435 46 1 2.6890 8.3109 -1.1512 47 1 -1.7429 5.2229 -2.4023 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183903729.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:19 Heat of formation + Delta-G solvation = -17.399910 kcal Electronic energy + Delta-G solvation = -28019.898226 eV Core-core repulsion = 24362.223989 eV Total energy + Delta-G solvation = -3657.674237 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.33682 -38.76956 -36.68885 -36.51895 -34.76133 -32.60176 -32.33223 -31.18538 -29.84625 -29.01176 -26.74542 -25.43087 -24.49259 -23.30736 -22.35455 -21.43743 -20.57852 -20.33662 -18.91952 -18.05942 -16.91264 -16.23646 -15.64454 -15.00202 -14.88494 -14.62782 -14.45220 -14.35112 -14.21975 -13.72805 -13.56461 -13.41431 -13.28973 -13.13204 -12.70593 -12.59490 -12.27822 -12.04097 -11.72432 -11.55726 -11.47271 -11.27935 -11.22487 -10.98984 -10.89488 -10.83043 -10.72002 -10.68355 -10.48514 -10.21218 -10.11193 -10.04895 -9.47109 -8.88044 -8.35559 -8.10028 -8.01906 -7.31010 -6.46036 -4.05656 1.76622 2.28481 3.11446 3.11815 3.16864 3.44634 3.68735 3.92907 4.52733 4.83226 4.93588 4.99196 5.05540 5.13475 5.21116 5.28322 5.41259 5.43097 5.45004 5.50640 5.58142 5.65893 5.71726 5.77155 5.81786 5.95089 5.97499 5.98019 6.07629 6.12516 6.15964 6.21595 6.24953 6.28039 6.29894 6.45885 6.55213 6.58257 6.67149 6.85598 6.89902 6.97229 7.04039 7.24173 7.27593 7.31610 7.68329 7.91575 8.06059 8.95102 9.07534 9.65879 10.68689 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010299 B = 0.005593 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2718.090178 B = 5004.641128 C = 6971.248738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.129 4.129 3 C -0.113 4.113 4 C 0.154 3.846 5 H 0.061 0.939 6 C -0.133 4.133 7 C -0.118 4.118 8 C -0.136 4.136 9 C 0.079 3.921 10 N -0.615 5.615 11 C 0.568 3.432 12 O -0.503 6.503 13 C -0.221 4.221 14 C -0.057 4.057 15 C -0.228 4.228 16 C -0.054 4.054 17 C -0.236 4.236 18 C 0.190 3.810 19 O -0.137 6.137 20 C -0.401 4.401 21 H 0.093 0.907 22 C 0.045 3.955 23 N -0.839 5.839 24 Si 0.940 3.060 25 H -0.273 1.273 26 H -0.276 1.276 27 H -0.266 1.266 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.044 0.956 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.117 0.883 42 H 0.060 0.940 43 H 0.129 0.871 44 H 0.110 0.890 45 H 0.110 0.890 46 H 0.131 0.869 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.094 -6.549 1.540 13.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.168 4.168 3 C -0.150 4.150 4 C 0.051 3.949 5 H 0.079 0.921 6 C -0.172 4.172 7 C -0.155 4.155 8 C -0.174 4.174 9 C -0.043 4.043 10 N -0.351 5.351 11 C 0.358 3.642 12 O -0.378 6.378 13 C -0.225 4.225 14 C -0.075 4.075 15 C -0.247 4.247 16 C -0.072 4.072 17 C -0.256 4.256 18 C 0.131 3.869 19 O -0.037 6.037 20 C -0.477 4.477 21 H 0.111 0.889 22 C -0.163 4.163 23 N -0.471 5.471 24 Si 0.764 3.236 25 H -0.198 1.198 26 H -0.201 1.201 27 H -0.191 1.191 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.111 0.889 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.134 0.866 42 H 0.078 0.922 43 H 0.146 0.854 44 H 0.128 0.872 45 H 0.128 0.872 46 H 0.149 0.851 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.026 -7.007 1.649 13.168 hybrid contribution -0.273 0.738 -0.541 0.955 sum 10.753 -6.269 1.108 12.496 Atomic orbital electron populations 1.21695 0.95870 1.00368 1.02552 1.21730 0.96226 0.98095 1.00702 1.22209 0.92061 0.94518 1.06203 1.21257 0.95883 0.81487 0.96265 0.92121 1.22135 0.95825 1.00541 0.98654 1.21508 0.96212 0.96435 1.01359 1.21931 1.00863 0.95862 0.98767 1.22549 0.81680 1.03624 0.96454 1.47972 1.08367 1.05542 1.73201 1.18189 0.85106 0.84258 0.76606 1.90858 1.17138 1.84092 1.45694 1.18869 0.95235 0.92701 1.15720 1.21099 0.93143 0.96296 0.96960 1.20493 1.00258 0.93481 1.10490 1.20888 0.93205 0.98175 0.94978 1.21148 0.97590 0.96744 1.10077 1.19216 0.85216 0.91419 0.91023 1.84075 1.18093 1.38822 1.62676 1.21432 0.99213 0.90808 1.36223 0.88933 1.25346 0.96346 0.97682 0.96877 1.70093 1.17210 1.19158 1.40604 0.85732 0.78793 0.79701 0.79330 1.19810 1.20143 1.19075 0.92728 0.92449 0.93680 0.92628 0.93025 0.88870 0.90356 0.91356 0.91079 0.92190 0.92213 0.91356 0.91262 0.86561 0.92172 0.85359 0.87208 0.87218 0.85119 0.91900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.91 37.16 0.37 -1.83 16 2 C -0.13 -1.87 5.70 -26.73 -0.15 -2.03 16 3 C -0.11 -2.03 3.17 -26.74 -0.08 -2.12 16 4 C 0.15 2.40 3.04 -67.37 -0.20 2.19 16 5 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 6 C -0.13 -1.77 4.85 -26.39 -0.13 -1.90 16 7 C -0.12 -1.31 5.88 -26.69 -0.16 -1.46 16 8 C -0.14 -1.62 6.08 -26.61 -0.16 -1.78 16 9 C 0.08 1.07 5.02 -3.71 -0.02 1.05 16 10 N -0.62 -10.62 2.97 -166.18 -0.49 -11.11 16 11 C 0.57 12.49 7.13 -12.47 -0.09 12.40 16 12 O -0.50 -13.01 11.49 -12.17 -0.14 -13.15 16 13 C -0.22 -4.78 5.51 -104.81 -0.58 -5.36 16 14 C -0.06 -0.97 7.42 -39.20 -0.29 -1.26 16 15 C -0.23 -3.69 10.02 -39.61 -0.40 -4.08 16 16 C -0.05 -0.94 10.03 -39.54 -0.40 -1.34 16 17 C -0.24 -5.05 9.16 -39.44 -0.36 -5.41 16 18 C 0.19 4.68 6.62 -38.60 -0.26 4.42 16 19 O -0.14 -4.01 8.42 -16.63 -0.14 -4.15 16 20 C -0.40 -11.26 9.49 30.90 0.29 -10.97 16 21 H 0.09 2.37 5.21 -52.49 -0.27 2.10 16 22 C 0.04 1.23 5.49 -17.52 -0.10 1.14 16 23 N -0.84 -24.94 13.67 55.48 0.76 -24.18 16 24 Si 0.94 20.50 29.55 -169.99 -5.02 15.47 16 25 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 26 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 27 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.73 6.31 -51.93 -0.33 0.41 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.09 1.93 6.25 -51.93 -0.32 1.61 16 34 H 0.08 1.74 7.22 -51.93 -0.37 1.36 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.07 0.82 6.65 -51.93 -0.35 0.48 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.12 1.62 3.52 -52.54 -0.18 1.44 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.13 1.79 5.50 -52.48 -0.29 1.50 16 44 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 45 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 46 H 0.13 2.77 5.64 -52.48 -0.30 2.47 16 47 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 362.23 15.07 5.46 5.46 Total: -1.00 -32.40 362.23 -9.33 -41.73 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -7.05 Total: 8.27 kcal Atomic # 6 Polarization: -15.64 SS G_CDS: -2.71 Total: -18.35 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: 0.27 Total: -35.29 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -0.28 Total: -17.29 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.40 -9.33 -41.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183903729.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.331 kcal (2) G-P(sol) polarization free energy of solvation -32.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds