Wall clock time and date at job start Tue Mar 31 2020 12:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47326 * 2 1 4 4 C 1.53001 * 109.47253 * 184.80320 * 3 2 1 5 5 H 1.09002 * 109.70054 * 298.68730 * 4 3 2 6 6 C 1.53628 * 109.66510 * 59.28112 * 4 3 2 7 7 C 1.53035 * 109.24189 * 174.54973 * 6 4 3 8 8 C 1.53039 * 109.54202 * 298.51422 * 7 6 4 9 9 C 1.53191 * 109.31291 * 61.36217 * 8 7 6 10 10 N 1.46925 * 109.58851 * 178.33175 * 4 3 2 11 11 C 1.34781 * 120.63164 * 6.63192 * 10 4 3 12 12 O 1.21594 * 119.99443 * 4.42038 * 11 10 4 13 13 C 1.47529 * 120.00053 * 184.15367 * 11 10 4 14 14 C 1.39667 * 120.19965 * 324.12717 * 13 11 10 15 15 C 1.37823 * 119.91736 * 179.71975 * 14 13 11 16 16 C 1.38566 * 120.32612 * 0.55751 * 15 14 13 17 17 C 1.38024 * 120.40072 * 359.71401 * 16 15 14 18 18 C 1.38833 * 120.07530 * 0.02562 * 17 16 15 19 19 O 1.35514 * 120.16255 * 180.02562 * 18 17 16 20 20 C 1.34812 * 117.00410 * 5.63478 * 19 18 17 21 21 H 1.07999 * 119.99590 * 354.94236 * 20 19 18 22 22 C 1.38698 * 120.00497 * 174.93778 * 20 19 18 23 23 N 1.31520 * 119.99753 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00197 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47348 * 90.00258 * 24 22 20 26 26 H 1.48497 * 109.47087 * 210.00059 * 24 22 20 27 27 H 1.48500 * 109.47223 * 329.99888 * 24 22 20 28 28 H 1.09000 * 109.47179 * 300.00279 * 1 2 3 29 29 H 1.08992 * 109.46874 * 60.00260 * 1 2 3 30 30 H 1.09002 * 109.47380 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47164 * 239.98979 * 2 1 3 32 32 H 1.09004 * 109.46541 * 119.99897 * 2 1 3 33 33 H 1.08997 * 109.47538 * 64.79920 * 3 2 1 34 34 H 1.08998 * 109.47024 * 304.79903 * 3 2 1 35 35 H 1.09001 * 109.63557 * 54.55736 * 6 4 3 36 36 H 1.09000 * 109.45649 * 294.43590 * 6 4 3 37 37 H 1.08999 * 109.46080 * 178.48719 * 7 6 4 38 38 H 1.09007 * 109.46088 * 58.52940 * 7 6 4 39 39 H 1.09001 * 109.49280 * 301.41155 * 8 7 6 40 40 H 1.08996 * 109.52724 * 181.33510 * 8 7 6 41 41 H 1.09004 * 109.58473 * 185.58329 * 9 8 7 42 42 H 1.08995 * 109.70079 * 65.22642 * 9 8 7 43 43 H 1.08004 * 120.03410 * 359.97438 * 14 13 11 44 44 H 1.07999 * 119.83628 * 180.24893 * 15 14 13 45 45 H 1.08006 * 119.80076 * 179.69792 * 16 15 14 46 46 H 1.08007 * 119.96311 * 179.97438 * 17 16 15 47 47 H 0.97000 * 120.00146 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5653 1.4441 -0.1208 5 1 4.0021 0.9269 0.7335 6 6 3.9817 0.7406 -1.4215 7 6 5.4963 0.8666 -1.6005 8 6 5.8777 2.3447 -1.7093 9 6 5.4818 3.0665 -0.4174 10 7 4.0547 2.8288 -0.1612 11 6 3.2116 3.8612 0.0387 12 8 2.0512 3.6500 0.3343 13 6 3.6982 5.2475 -0.0954 14 6 4.9933 5.5797 0.3083 15 6 5.4439 6.8753 0.1751 16 6 4.6141 7.8544 -0.3473 17 6 3.3299 7.5421 -0.7453 18 6 2.8607 6.2412 -0.6236 19 8 1.6003 5.9325 -1.0142 20 6 0.8918 6.9060 -1.6206 21 1 1.3022 7.9016 -1.7023 22 6 -0.3643 6.6290 -2.1396 23 7 -0.8643 5.4166 -2.0397 24 14 -1.3457 7.9777 -2.9804 25 1 -1.0238 7.9939 -4.4299 26 1 -2.7969 7.7206 -2.7986 27 1 -0.9968 9.2908 -2.3811 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5140 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 1.7487 1.9309 0.9298 34 1 1.6082 1.9804 -0.8439 35 1 3.4754 1.2055 -2.2676 36 1 3.7080 -0.3131 -1.3681 37 1 5.7992 0.3456 -2.5087 38 1 6.0015 0.4235 -0.7422 39 1 5.3537 2.7945 -2.5526 40 1 6.9535 2.4332 -1.8604 41 1 5.6601 4.1363 -0.5271 42 1 6.0715 2.6812 0.4143 43 1 5.6423 4.8211 0.7206 44 1 6.4470 7.1298 0.4839 45 1 4.9743 8.8681 -0.4435 46 1 2.6890 8.3109 -1.1512 47 1 -1.7429 5.2229 -2.4023 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183903729.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:18 Heat of formation + Delta-G solvation = -37.083082 kcal Electronic energy + Delta-G solvation = -28020.751752 eV Core-core repulsion = 24362.223989 eV Total energy + Delta-G solvation = -3658.527763 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.83647 -40.40623 -38.23538 -38.14692 -36.07197 -34.36090 -33.88272 -32.48995 -31.23001 -30.65321 -28.04811 -27.41760 -25.81156 -24.62852 -23.81052 -22.93876 -21.77325 -21.72105 -20.37661 -19.88869 -18.59235 -17.77371 -17.13851 -16.55372 -16.35326 -16.17645 -15.88954 -15.72967 -15.63877 -15.34736 -15.04529 -14.66972 -14.63599 -14.49313 -14.21583 -14.01248 -13.79071 -13.58720 -13.37960 -13.05651 -12.79916 -12.74459 -12.59758 -12.52888 -12.30014 -12.18511 -12.14796 -11.90492 -11.75910 -11.53897 -11.39901 -11.31394 -11.17895 -10.83466 -9.95957 -9.66085 -9.41493 -9.02414 -8.47656 -6.18117 0.19399 0.69719 1.29465 1.40798 1.48441 1.94564 2.13416 2.20467 2.82702 3.16759 3.42875 3.59788 3.84977 3.91268 4.01800 4.07097 4.11970 4.18588 4.21442 4.26857 4.30944 4.35801 4.52252 4.56124 4.61085 4.64759 4.73289 4.82028 4.89378 4.95273 4.98374 5.02692 5.04683 5.06409 5.08913 5.14622 5.16369 5.23638 5.27091 5.40017 5.48469 5.51237 5.55281 5.60322 5.69178 5.88251 5.94544 6.16506 6.57229 6.92757 7.47268 7.77674 8.73395 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010299 B = 0.005593 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2718.090178 B = 5004.641128 C = 6971.248738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C -0.101 4.101 4 C 0.150 3.850 5 H 0.093 0.907 6 C -0.129 4.129 7 C -0.112 4.112 8 C -0.134 4.134 9 C 0.070 3.930 10 N -0.609 5.609 11 C 0.552 3.448 12 O -0.561 6.561 13 C -0.238 4.238 14 C -0.048 4.048 15 C -0.196 4.196 16 C -0.045 4.045 17 C -0.255 4.255 18 C 0.146 3.854 19 O -0.202 6.202 20 C -0.423 4.423 21 H 0.105 0.895 22 C -0.023 4.023 23 N -0.909 5.909 24 Si 1.021 2.979 25 H -0.261 1.261 26 H -0.273 1.273 27 H -0.248 1.248 28 H 0.038 0.962 29 H 0.027 0.973 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.016 0.984 35 H 0.031 0.969 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.036 0.964 40 H 0.106 0.894 41 H 0.112 0.888 42 H 0.101 0.899 43 H 0.171 0.829 44 H 0.167 0.833 45 H 0.154 0.846 46 H 0.121 0.879 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.516 -6.780 2.343 18.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.139 4.139 4 C 0.047 3.953 5 H 0.111 0.889 6 C -0.167 4.167 7 C -0.149 4.149 8 C -0.172 4.172 9 C -0.050 4.050 10 N -0.343 5.343 11 C 0.343 3.657 12 O -0.441 6.441 13 C -0.242 4.242 14 C -0.066 4.066 15 C -0.214 4.214 16 C -0.063 4.063 17 C -0.274 4.274 18 C 0.092 3.908 19 O -0.106 6.106 20 C -0.499 4.499 21 H 0.123 0.877 22 C -0.221 4.221 23 N -0.545 5.545 24 Si 0.839 3.161 25 H -0.186 1.186 26 H -0.198 1.198 27 H -0.172 1.172 28 H 0.057 0.943 29 H 0.047 0.953 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.074 0.926 34 H 0.035 0.965 35 H 0.050 0.950 36 H 0.114 0.886 37 H 0.095 0.905 38 H 0.106 0.894 39 H 0.055 0.945 40 H 0.125 0.875 41 H 0.129 0.871 42 H 0.119 0.881 43 H 0.188 0.812 44 H 0.184 0.816 45 H 0.171 0.829 46 H 0.139 0.861 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 16.572 -7.234 2.461 18.249 hybrid contribution -1.527 0.797 -0.632 1.835 sum 15.046 -6.436 1.829 16.466 Atomic orbital electron populations 1.21713 0.96736 1.01746 1.00404 1.21679 0.95501 0.95683 1.02927 1.21880 0.94518 0.95900 1.01615 1.21463 0.93805 0.81126 0.98875 0.88918 1.22109 0.97856 1.01074 0.95650 1.21519 0.93855 0.96084 1.03459 1.21944 1.02680 0.96064 0.96528 1.22894 0.79294 1.03957 0.98893 1.48079 1.09705 1.05203 1.71321 1.18552 0.84968 0.85651 0.76507 1.90859 1.19681 1.85060 1.48458 1.19332 0.96953 0.92326 1.15636 1.21619 0.91301 0.98230 0.95458 1.21209 1.01962 0.92014 1.06197 1.21413 0.91225 1.00829 0.92872 1.21287 0.99652 0.95231 1.11263 1.19996 0.84900 0.93784 0.92090 1.84076 1.20600 1.39928 1.65998 1.21961 0.99918 0.91462 1.36562 0.87737 1.26721 0.97378 1.00469 0.97552 1.70295 1.17960 1.22230 1.44057 0.84576 0.76644 0.76553 0.78308 1.18563 1.19799 1.17165 0.94300 0.95343 0.90325 0.90660 0.90066 0.92565 0.96480 0.94962 0.88637 0.90456 0.89428 0.94525 0.87548 0.87085 0.88107 0.81161 0.81579 0.82877 0.86087 0.92122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.75 9.91 71.98 0.71 -4.03 16 2 C -0.12 -3.54 5.70 30.59 0.17 -3.36 16 3 C -0.10 -3.99 3.17 30.59 0.10 -3.89 16 4 C 0.15 4.62 3.04 45.12 0.14 4.76 16 5 H 0.09 2.33 8.14 -2.39 -0.02 2.32 16 6 C -0.13 -3.26 4.85 30.82 0.15 -3.11 16 7 C -0.11 -2.04 5.88 30.62 0.18 -1.86 16 8 C -0.13 -2.74 6.08 30.67 0.19 -2.55 16 9 C 0.07 1.64 5.02 86.36 0.43 2.08 16 10 N -0.61 -21.07 2.97 -797.93 -2.37 -23.44 16 11 C 0.55 25.93 7.13 86.69 0.62 26.55 16 12 O -0.56 -32.48 11.49 12.68 0.15 -32.33 16 13 C -0.24 -10.63 5.51 -19.99 -0.11 -10.74 16 14 C -0.05 -1.50 7.42 22.52 0.17 -1.34 16 15 C -0.20 -5.26 10.02 22.25 0.22 -5.03 16 16 C -0.05 -1.43 10.03 22.30 0.22 -1.21 16 17 C -0.26 -11.12 9.16 22.36 0.20 -10.91 16 18 C 0.15 7.69 6.62 22.91 0.15 7.85 16 19 O -0.20 -13.08 8.42 -3.28 -0.03 -13.11 16 20 C -0.42 -25.98 9.49 67.93 0.64 -25.33 16 21 H 0.11 5.78 5.21 -2.91 -0.02 5.77 16 22 C -0.02 -1.36 5.49 84.85 0.47 -0.89 16 23 N -0.91 -60.04 13.67 21.62 0.30 -59.74 16 24 Si 1.02 44.98 29.55 68.60 2.03 47.01 16 25 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 27 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 28 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.07 1.92 6.31 -2.39 -0.02 1.91 16 32 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 33 H 0.06 2.60 6.25 -2.39 -0.01 2.59 16 34 H 0.02 0.85 7.22 -2.39 -0.02 0.83 16 35 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.10 1.95 6.65 -2.39 -0.02 1.93 16 37 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 39 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.11 2.68 3.52 -2.96 -0.01 2.67 16 42 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.17 3.86 5.50 -2.91 -0.02 3.84 16 44 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 45 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 46 H 0.12 5.37 5.64 -2.91 -0.02 5.35 16 47 H 0.27 16.37 8.31 -92.71 -0.77 15.60 16 Total: -1.00 -88.01 362.23 5.70 -82.30 By element: Atomic # 1 Polarization: 31.36 SS G_CDS: 0.97 Total: 32.33 kcal Atomic # 6 Polarization: -37.68 SS G_CDS: 4.66 Total: -33.02 kcal Atomic # 7 Polarization: -81.11 SS G_CDS: -2.07 Total: -83.18 kcal Atomic # 8 Polarization: -45.56 SS G_CDS: 0.12 Total: -45.44 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -88.01 5.70 -82.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183903729.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.221 kcal (2) G-P(sol) polarization free energy of solvation -88.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds