Wall clock time and date at job start Tue Mar 31 2020 12:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47407 * 2 1 4 4 C 1.52999 * 109.47007 * 119.99960 * 2 1 3 5 5 H 1.08996 * 109.47426 * 186.19196 * 4 2 1 6 6 C 1.53005 * 109.47101 * 306.19243 * 4 2 1 7 7 C 1.50692 * 109.47244 * 280.74489 * 6 4 2 8 8 C 1.38228 * 120.00344 * 115.94914 * 7 6 4 9 9 C 1.38244 * 120.00160 * 180.27541 * 8 7 6 10 10 C 1.38234 * 120.00059 * 359.49420 * 9 8 7 11 11 C 1.38235 * 119.99752 * 0.50860 * 10 9 8 12 12 C 1.38237 * 120.00029 * 359.74294 * 11 10 9 13 13 C 1.50700 * 109.47389 * 66.19242 * 4 2 1 14 14 O 1.21286 * 120.00020 * 252.39851 * 13 4 2 15 15 N 1.34776 * 119.99956 * 72.39152 * 13 4 2 16 16 C 1.47063 * 136.05822 * 4.27422 * 15 13 4 17 17 C 1.53238 * 88.08441 * 207.20191 * 16 15 13 18 18 O 1.42894 * 114.19534 * 87.72865 * 17 16 15 19 19 C 1.50702 * 114.32438 * 220.46778 * 17 16 15 20 20 H 1.08008 * 119.99580 * 93.76144 * 19 17 16 21 21 C 1.37867 * 120.00213 * 273.75939 * 19 17 16 22 22 N 1.31513 * 120.00290 * 0.02562 * 21 19 17 23 23 Si 1.86809 * 120.00071 * 180.02562 * 21 19 17 24 24 H 1.48493 * 109.47068 * 89.99866 * 23 21 19 25 25 H 1.48505 * 109.46920 * 210.00056 * 23 21 19 26 26 H 1.48502 * 109.46822 * 329.99813 * 23 21 19 27 27 C 1.47066 * 136.05728 * 184.64177 * 15 13 4 28 28 H 1.09004 * 109.47121 * 66.84092 * 1 2 3 29 29 H 1.09001 * 109.47612 * 186.83835 * 1 2 3 30 30 H 1.09005 * 109.47333 * 306.84173 * 1 2 3 31 31 H 1.08999 * 109.46730 * 239.99428 * 2 1 3 32 32 H 1.08997 * 109.47260 * 165.61492 * 3 2 1 33 33 H 1.09009 * 109.46852 * 285.61564 * 3 2 1 34 34 H 1.09002 * 109.47290 * 45.60807 * 3 2 1 35 35 H 1.08999 * 109.47158 * 160.74124 * 6 4 2 36 36 H 1.09007 * 109.46992 * 40.74126 * 6 4 2 37 37 H 1.08001 * 120.00138 * 0.02562 * 8 7 6 38 38 H 1.08002 * 120.00172 * 179.72477 * 9 8 7 39 39 H 1.07990 * 120.00256 * 180.23391 * 10 9 8 40 40 H 1.07999 * 120.00327 * 179.72381 * 11 10 9 41 41 H 1.08006 * 120.00468 * 179.97438 * 12 11 10 42 42 H 1.09000 * 113.46623 * 321.94032 * 16 15 13 43 43 H 1.09006 * 113.46803 * 92.37172 * 16 15 13 44 44 H 0.96700 * 114.00120 * 86.30312 * 18 17 16 45 45 H 0.97004 * 120.00575 * 180.02562 * 22 21 19 46 46 H 1.09001 * 113.46641 * 267.62691 * 27 15 13 47 47 H 1.09002 * 113.46659 * 38.00694 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 1 3.1242 -0.6263 1.3065 6 6 1.4068 -0.0954 2.4936 7 6 2.1286 1.1824 2.8359 8 6 1.4599 2.3907 2.7784 9 6 2.1236 3.5635 3.0869 10 6 3.4533 3.5267 3.4630 11 6 4.1222 2.3183 3.5204 12 6 3.4598 1.1462 3.2069 13 6 1.6667 -2.1794 1.1751 14 8 0.7929 -2.6190 1.8923 15 7 2.3036 -2.9950 0.3116 16 6 3.4247 -2.8703 -0.6320 17 6 2.7894 -3.9956 -1.4556 18 8 1.8344 -3.5482 -2.4199 19 6 3.7752 -4.9910 -2.0109 20 1 3.9959 -5.8954 -1.4633 21 6 4.3953 -4.7473 -3.2179 22 7 4.1269 -3.6458 -3.8845 23 14 5.6167 -5.9816 -3.9066 24 1 4.8999 -6.9660 -4.7563 25 1 6.6327 -5.2698 -4.7230 26 1 6.2887 -6.6900 -2.7877 27 6 2.1793 -4.3995 -0.1063 28 1 -0.3633 0.4042 -0.9449 29 1 -0.3634 -1.0203 0.1224 30 1 -0.3634 0.6162 0.8225 31 1 1.8932 -0.5139 -0.8899 32 1 3.0996 1.4532 0.2553 33 1 1.9003 1.8772 -0.9898 34 1 1.4834 2.0247 0.7343 35 1 1.4835 -0.7911 3.3293 36 1 0.3569 0.1219 2.2969 37 1 0.4198 2.4191 2.4886 38 1 1.6023 4.5081 3.0377 39 1 3.9708 4.4425 3.7076 40 1 5.1622 2.2900 3.8099 41 1 3.9825 0.2020 3.2514 42 1 3.4489 -1.9133 -1.1532 43 1 4.3883 -3.1397 -0.1994 44 1 2.2219 -3.2945 -3.2688 45 1 4.5629 -3.4745 -4.7339 46 1 2.8078 -5.0804 0.4678 47 1 1.1467 -4.7406 -0.1804 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186820572.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:31 Heat of formation + Delta-G solvation = -34.236871 kcal Electronic energy + Delta-G solvation = -27572.108747 eV Core-core repulsion = 23913.704405 eV Total energy + Delta-G solvation = -3658.404342 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.31049 -39.27302 -37.76087 -35.94217 -34.00640 -32.21574 -32.19925 -31.02320 -29.50676 -28.27302 -26.94274 -25.74484 -25.12086 -24.16952 -22.59555 -21.33783 -20.57540 -19.27669 -17.99121 -17.44151 -16.91158 -16.12003 -15.95395 -15.48495 -15.10918 -14.99915 -14.75200 -14.32700 -14.16881 -13.61318 -13.43177 -13.24581 -13.12764 -12.81249 -12.69902 -12.55969 -12.23001 -12.12338 -11.92653 -11.65276 -11.56779 -11.45842 -11.13802 -11.09143 -11.06609 -10.89373 -10.82376 -10.50174 -10.45953 -10.33961 -10.20987 -9.55673 -9.12920 -8.91043 -8.78078 -8.56320 -8.36118 -7.82766 -6.41632 -4.51912 1.31896 1.34757 3.13528 3.20779 3.22024 3.24696 3.55051 3.78042 4.16886 4.71449 4.74309 4.82718 4.93245 4.98068 5.00726 5.06255 5.13914 5.39651 5.43890 5.48001 5.54084 5.58613 5.63682 5.73346 5.85617 5.94007 5.94564 5.98517 6.03461 6.10455 6.12506 6.18768 6.26411 6.34477 6.40397 6.42593 6.46131 6.50433 6.53294 6.57140 6.65696 6.69718 6.72867 6.96705 7.10912 7.61650 7.79817 8.50484 8.55711 8.80284 9.19662 9.48021 10.64873 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018921 B = 0.003396 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.459455 B = 8241.993721 C = 8605.339398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.151 4.151 4 C -0.088 4.088 5 H 0.089 0.911 6 C -0.071 4.071 7 C -0.064 4.064 8 C -0.115 4.115 9 C -0.121 4.121 10 C -0.130 4.130 11 C -0.117 4.117 12 C -0.120 4.120 13 C 0.541 3.459 14 O -0.565 6.565 15 N -0.633 5.633 16 C 0.072 3.928 17 C 0.241 3.759 18 O -0.571 6.571 19 C -0.534 4.534 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.898 5.898 23 Si 0.908 3.092 24 H -0.277 1.277 25 H -0.283 1.283 26 H -0.271 1.271 27 C 0.106 3.894 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.121 0.879 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.064 0.936 43 H 0.079 0.921 44 H 0.393 0.607 45 H 0.274 0.726 46 H 0.083 0.917 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.428 12.816 9.254 15.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.103 4.103 3 C -0.208 4.208 4 C -0.109 4.109 5 H 0.107 0.893 6 C -0.108 4.108 7 C -0.064 4.064 8 C -0.133 4.133 9 C -0.139 4.139 10 C -0.148 4.148 11 C -0.135 4.135 12 C -0.138 4.138 13 C 0.330 3.670 14 O -0.446 6.446 15 N -0.365 5.365 16 C -0.051 4.051 17 C 0.199 3.801 18 O -0.384 6.384 19 C -0.572 4.572 20 H 0.090 0.910 21 C -0.130 4.130 22 N -0.538 5.538 23 Si 0.735 3.265 24 H -0.202 1.202 25 H -0.209 1.209 26 H -0.196 1.196 27 C -0.017 4.017 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.139 0.861 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.083 0.917 43 H 0.098 0.902 44 H 0.250 0.750 45 H 0.084 0.916 46 H 0.101 0.899 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.355 12.706 10.073 16.271 hybrid contribution 1.295 -0.410 -0.895 1.627 sum -0.060 12.296 9.178 15.344 Atomic orbital electron populations 1.21912 0.94964 1.02373 1.01156 1.21029 0.96303 0.96125 0.96826 1.22153 1.01101 0.95761 1.01773 1.21322 1.01504 0.91621 0.96468 0.89321 1.20596 0.99799 0.93326 0.97062 1.19942 0.94142 0.95018 0.97276 1.21004 0.99912 0.92047 1.00296 1.21093 0.94912 0.97973 0.99922 1.21075 0.94933 0.97735 1.01078 1.21110 0.99732 0.92624 1.00068 1.21054 0.94363 0.98412 0.99951 1.19996 0.81594 0.87323 0.78053 1.90623 1.33456 1.77445 1.43075 1.49690 1.34151 1.13160 1.39536 1.24160 0.89600 1.02493 0.88883 1.19471 0.86023 0.89661 0.84945 1.86043 1.36841 1.87160 1.28350 1.21443 1.23412 1.06444 1.05905 0.91004 1.25063 0.96370 0.95347 0.96201 1.69260 1.43935 1.24820 1.15832 0.86328 0.80297 0.80795 0.79092 1.20242 1.20904 1.19550 1.23317 1.01127 0.82671 0.94553 0.92692 0.92203 0.92633 0.89985 0.92852 0.93022 0.91432 0.89964 0.89717 0.86119 0.86365 0.86507 0.86326 0.86195 0.91708 0.90240 0.75023 0.91595 0.89905 0.91704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 8.42 37.16 0.31 -1.84 16 2 C -0.08 -1.26 2.67 -90.62 -0.24 -1.51 16 3 C -0.15 -1.93 7.92 37.16 0.29 -1.64 16 4 C -0.09 -1.37 1.90 -91.77 -0.17 -1.55 16 5 H 0.09 1.34 7.09 -51.93 -0.37 0.97 16 6 C -0.07 -0.98 4.29 -27.88 -0.12 -1.10 16 7 C -0.06 -0.77 3.62 -104.63 -0.38 -1.15 16 8 C -0.11 -1.24 7.03 -39.58 -0.28 -1.51 16 9 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 10 C -0.13 -1.26 10.05 -39.58 -0.40 -1.66 16 11 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 12 C -0.12 -1.40 9.02 -39.58 -0.36 -1.76 16 13 C 0.54 10.70 6.22 -10.99 -0.07 10.63 16 14 O -0.57 -12.63 16.51 5.55 0.09 -12.54 16 15 N -0.63 -13.16 3.69 -185.39 -0.68 -13.85 16 16 C 0.07 1.51 7.74 -8.65 -0.07 1.45 16 17 C 0.24 5.68 1.57 -91.39 -0.14 5.53 16 18 O -0.57 -14.46 13.54 -35.23 -0.48 -14.93 16 19 C -0.53 -13.18 8.69 -34.44 -0.30 -13.48 16 20 H 0.07 1.73 7.81 -52.48 -0.41 1.32 16 21 C 0.07 1.78 5.39 -17.82 -0.10 1.68 16 22 N -0.90 -22.35 11.01 55.43 0.61 -21.74 16 23 Si 0.91 19.17 29.54 -169.99 -5.02 14.15 16 24 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 25 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 26 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 27 C 0.11 2.30 8.04 -8.52 -0.07 2.23 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.06 1.04 7.15 -51.93 -0.37 0.67 16 30 H 0.05 0.71 6.24 -51.93 -0.32 0.38 16 31 H 0.08 1.44 6.97 -51.93 -0.36 1.08 16 32 H 0.05 0.69 7.92 -51.93 -0.41 0.28 16 33 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 34 H 0.07 0.79 4.26 -51.93 -0.22 0.57 16 35 H 0.08 1.23 7.61 -51.93 -0.40 0.84 16 36 H 0.08 1.16 5.27 -51.92 -0.27 0.89 16 37 H 0.12 1.16 7.86 -52.49 -0.41 0.75 16 38 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 41 H 0.12 1.36 7.84 -52.48 -0.41 0.94 16 42 H 0.06 1.36 7.08 -51.93 -0.37 1.00 16 43 H 0.08 1.60 8.10 -51.93 -0.42 1.18 16 44 H 0.39 10.09 6.33 45.56 0.29 10.38 16 45 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 46 H 0.08 1.67 8.10 -51.93 -0.42 1.25 16 47 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 370.81 15.07 5.59 5.59 Total: -1.00 -27.43 370.81 -9.32 -36.75 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: -6.55 Total: 15.42 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: -2.88 Total: -8.85 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: -0.07 Total: -35.59 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -0.39 Total: -27.47 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.15 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -27.43 -9.32 -36.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186820572.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.517 kcal (2) G-P(sol) polarization free energy of solvation -27.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds