Wall clock time and date at job start Tue Mar 31 2020 12:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47407 * 2 1 4 4 C 1.52999 * 109.47007 * 119.99960 * 2 1 3 5 5 H 1.08996 * 109.47426 * 186.19196 * 4 2 1 6 6 C 1.53005 * 109.47101 * 306.19243 * 4 2 1 7 7 C 1.50692 * 109.47244 * 280.74489 * 6 4 2 8 8 C 1.38228 * 120.00344 * 115.94914 * 7 6 4 9 9 C 1.38244 * 120.00160 * 180.27541 * 8 7 6 10 10 C 1.38234 * 120.00059 * 359.49420 * 9 8 7 11 11 C 1.38235 * 119.99752 * 0.50860 * 10 9 8 12 12 C 1.38237 * 120.00029 * 359.74294 * 11 10 9 13 13 C 1.50700 * 109.47389 * 66.19242 * 4 2 1 14 14 O 1.21286 * 120.00020 * 252.39851 * 13 4 2 15 15 N 1.34776 * 119.99956 * 72.39152 * 13 4 2 16 16 C 1.47063 * 136.05822 * 4.27422 * 15 13 4 17 17 C 1.53238 * 88.08441 * 207.20191 * 16 15 13 18 18 O 1.42894 * 114.19534 * 87.72865 * 17 16 15 19 19 C 1.50702 * 114.32438 * 220.46778 * 17 16 15 20 20 H 1.08008 * 119.99580 * 93.76144 * 19 17 16 21 21 C 1.37867 * 120.00213 * 273.75939 * 19 17 16 22 22 N 1.31513 * 120.00290 * 0.02562 * 21 19 17 23 23 Si 1.86809 * 120.00071 * 180.02562 * 21 19 17 24 24 H 1.48493 * 109.47068 * 89.99866 * 23 21 19 25 25 H 1.48505 * 109.46920 * 210.00056 * 23 21 19 26 26 H 1.48502 * 109.46822 * 329.99813 * 23 21 19 27 27 C 1.47066 * 136.05728 * 184.64177 * 15 13 4 28 28 H 1.09004 * 109.47121 * 66.84092 * 1 2 3 29 29 H 1.09001 * 109.47612 * 186.83835 * 1 2 3 30 30 H 1.09005 * 109.47333 * 306.84173 * 1 2 3 31 31 H 1.08999 * 109.46730 * 239.99428 * 2 1 3 32 32 H 1.08997 * 109.47260 * 165.61492 * 3 2 1 33 33 H 1.09009 * 109.46852 * 285.61564 * 3 2 1 34 34 H 1.09002 * 109.47290 * 45.60807 * 3 2 1 35 35 H 1.08999 * 109.47158 * 160.74124 * 6 4 2 36 36 H 1.09007 * 109.46992 * 40.74126 * 6 4 2 37 37 H 1.08001 * 120.00138 * 0.02562 * 8 7 6 38 38 H 1.08002 * 120.00172 * 179.72477 * 9 8 7 39 39 H 1.07990 * 120.00256 * 180.23391 * 10 9 8 40 40 H 1.07999 * 120.00327 * 179.72381 * 11 10 9 41 41 H 1.08006 * 120.00468 * 179.97438 * 12 11 10 42 42 H 1.09000 * 113.46623 * 321.94032 * 16 15 13 43 43 H 1.09006 * 113.46803 * 92.37172 * 16 15 13 44 44 H 0.96700 * 114.00120 * 86.30312 * 18 17 16 45 45 H 0.97004 * 120.00575 * 180.02562 * 22 21 19 46 46 H 1.09001 * 113.46641 * 267.62691 * 27 15 13 47 47 H 1.09002 * 113.46659 * 38.00694 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 1 3.1242 -0.6263 1.3065 6 6 1.4068 -0.0954 2.4936 7 6 2.1286 1.1824 2.8359 8 6 1.4599 2.3907 2.7784 9 6 2.1236 3.5635 3.0869 10 6 3.4533 3.5267 3.4630 11 6 4.1222 2.3183 3.5204 12 6 3.4598 1.1462 3.2069 13 6 1.6667 -2.1794 1.1751 14 8 0.7929 -2.6190 1.8923 15 7 2.3036 -2.9950 0.3116 16 6 3.4247 -2.8703 -0.6320 17 6 2.7894 -3.9956 -1.4556 18 8 1.8344 -3.5482 -2.4199 19 6 3.7752 -4.9910 -2.0109 20 1 3.9959 -5.8954 -1.4633 21 6 4.3953 -4.7473 -3.2179 22 7 4.1269 -3.6458 -3.8845 23 14 5.6167 -5.9816 -3.9066 24 1 4.8999 -6.9660 -4.7563 25 1 6.6327 -5.2698 -4.7230 26 1 6.2887 -6.6900 -2.7877 27 6 2.1793 -4.3995 -0.1063 28 1 -0.3633 0.4042 -0.9449 29 1 -0.3634 -1.0203 0.1224 30 1 -0.3634 0.6162 0.8225 31 1 1.8932 -0.5139 -0.8899 32 1 3.0996 1.4532 0.2553 33 1 1.9003 1.8772 -0.9898 34 1 1.4834 2.0247 0.7343 35 1 1.4835 -0.7911 3.3293 36 1 0.3569 0.1219 2.2969 37 1 0.4198 2.4191 2.4886 38 1 1.6023 4.5081 3.0377 39 1 3.9708 4.4425 3.7076 40 1 5.1622 2.2900 3.8099 41 1 3.9825 0.2020 3.2514 42 1 3.4489 -1.9133 -1.1532 43 1 4.3883 -3.1397 -0.1994 44 1 2.2219 -3.2945 -3.2688 45 1 4.5629 -3.4745 -4.7339 46 1 2.8078 -5.0804 0.4678 47 1 1.1467 -4.7406 -0.1804 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186820572.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:30 Heat of formation + Delta-G solvation = -49.201682 kcal Electronic energy + Delta-G solvation = -27572.757670 eV Core-core repulsion = 23913.704405 eV Total energy + Delta-G solvation = -3659.053265 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.72209 -40.50219 -39.25834 -37.26834 -35.88692 -34.12283 -33.18684 -31.82771 -30.97932 -29.63998 -28.10140 -27.37412 -26.87071 -25.46433 -23.40056 -22.30605 -22.14921 -20.72979 -19.65140 -19.17743 -18.05323 -17.38422 -17.37241 -17.02876 -16.68256 -16.24195 -15.98164 -15.81401 -15.46221 -15.05770 -14.74449 -14.37254 -14.31649 -14.17167 -14.04531 -13.78625 -13.58140 -13.44263 -13.39929 -13.26882 -12.88913 -12.80157 -12.74663 -12.52782 -12.22567 -12.18326 -12.08451 -11.93407 -11.82841 -11.62616 -11.43340 -11.32422 -10.84738 -10.61453 -10.21871 -9.70351 -9.57917 -9.41417 -8.27738 -6.44937 0.50146 0.56295 1.46495 1.49862 1.58563 1.62181 1.97475 2.40386 2.92900 2.94754 3.39631 3.65316 3.75429 3.77469 4.02814 4.08059 4.09963 4.21733 4.23469 4.32714 4.35554 4.43904 4.47161 4.51945 4.61410 4.69292 4.69811 4.76965 4.79307 4.84774 4.89693 4.96357 4.97058 5.02716 5.06416 5.18476 5.22292 5.23821 5.25147 5.39338 5.44203 5.64752 5.69887 5.72456 5.79002 5.90809 6.18802 6.60642 6.88922 7.15061 7.29433 7.49188 8.78235 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018921 B = 0.003396 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.459455 B = 8241.993721 C = 8605.339398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.080 4.080 3 C -0.141 4.141 4 C -0.078 4.078 5 H 0.094 0.906 6 C -0.060 4.060 7 C -0.077 4.077 8 C -0.121 4.121 9 C -0.121 4.121 10 C -0.130 4.130 11 C -0.123 4.123 12 C -0.135 4.135 13 C 0.535 3.465 14 O -0.593 6.593 15 N -0.635 5.635 16 C 0.087 3.913 17 C 0.223 3.777 18 O -0.584 6.584 19 C -0.554 4.554 20 H 0.073 0.927 21 C 0.034 3.966 22 N -0.916 5.916 23 Si 0.969 3.031 24 H -0.279 1.279 25 H -0.280 1.280 26 H -0.266 1.266 27 C 0.104 3.896 28 H 0.065 0.935 29 H 0.025 0.975 30 H 0.078 0.922 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.132 0.868 38 H 0.143 0.857 39 H 0.141 0.859 40 H 0.135 0.865 41 H 0.115 0.885 42 H 0.062 0.938 43 H 0.090 0.910 44 H 0.389 0.611 45 H 0.277 0.723 46 H 0.099 0.901 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.582 14.844 9.792 17.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.099 4.099 3 C -0.197 4.197 4 C -0.099 4.099 5 H 0.112 0.888 6 C -0.097 4.097 7 C -0.077 4.077 8 C -0.138 4.138 9 C -0.139 4.139 10 C -0.147 4.147 11 C -0.141 4.141 12 C -0.153 4.153 13 C 0.326 3.674 14 O -0.476 6.476 15 N -0.368 5.368 16 C -0.036 4.036 17 C 0.182 3.818 18 O -0.397 6.397 19 C -0.592 4.592 20 H 0.091 0.909 21 C -0.166 4.166 22 N -0.556 5.556 23 Si 0.794 3.206 24 H -0.205 1.205 25 H -0.205 1.205 26 H -0.190 1.190 27 C -0.019 4.019 28 H 0.084 0.916 29 H 0.044 0.956 30 H 0.096 0.904 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.150 0.850 38 H 0.161 0.839 39 H 0.159 0.841 40 H 0.153 0.847 41 H 0.133 0.867 42 H 0.081 0.919 43 H 0.108 0.892 44 H 0.245 0.755 45 H 0.087 0.913 46 H 0.117 0.883 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.345 14.742 10.622 18.173 hybrid contribution 0.943 -1.026 -1.035 1.736 sum 0.599 13.716 9.587 16.745 Atomic orbital electron populations 1.21884 0.94676 1.00737 1.02695 1.20980 0.96511 0.97390 0.95029 1.22073 1.01080 0.93880 1.02710 1.21331 1.01980 0.88631 0.97929 0.88754 1.20450 0.99930 0.94025 0.95339 1.19769 0.94397 0.94493 0.99021 1.21175 1.00545 0.91857 1.00258 1.21415 0.95078 0.98551 0.98841 1.21434 0.95084 0.98360 0.99871 1.21355 1.00638 0.92435 0.99709 1.21140 0.94461 0.98974 1.00721 1.20821 0.80742 0.88768 0.77032 1.90597 1.34582 1.78277 1.44117 1.49752 1.34293 1.12846 1.39884 1.23935 0.89834 1.01447 0.88355 1.19706 0.86247 0.90758 0.85121 1.86030 1.37789 1.87374 1.28532 1.21663 1.24007 1.06889 1.06657 0.90900 1.25741 0.97766 0.96818 0.96316 1.69322 1.44442 1.25834 1.16046 0.85375 0.78226 0.78620 0.78336 1.20463 1.20513 1.19040 1.23322 1.00527 0.83772 0.94250 0.91636 0.95589 0.90372 0.92887 0.92976 0.92301 0.89888 0.91654 0.89685 0.84972 0.83898 0.84091 0.84722 0.86737 0.91942 0.89165 0.75532 0.91332 0.88268 0.93071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.15 8.42 71.98 0.61 -3.55 16 2 C -0.08 -2.39 2.67 -10.80 -0.03 -2.42 16 3 C -0.14 -3.35 7.92 71.98 0.57 -2.78 16 4 C -0.08 -2.44 1.90 -11.54 -0.02 -2.46 16 5 H 0.09 2.85 7.09 -2.39 -0.02 2.83 16 6 C -0.06 -1.65 4.29 29.85 0.13 -1.52 16 7 C -0.08 -1.75 3.62 -19.87 -0.07 -1.82 16 8 C -0.12 -2.29 7.03 22.27 0.16 -2.13 16 9 C -0.12 -1.94 10.05 22.27 0.22 -1.71 16 10 C -0.13 -2.07 10.05 22.27 0.22 -1.85 16 11 C -0.12 -2.27 10.05 22.27 0.22 -2.04 16 12 C -0.13 -2.98 9.02 22.27 0.20 -2.78 16 13 C 0.53 21.69 6.22 87.66 0.55 22.23 16 14 O -0.59 -27.28 16.51 -3.05 -0.05 -27.33 16 15 N -0.64 -27.02 3.69 -859.33 -3.17 -30.19 16 16 C 0.09 3.72 7.74 83.09 0.64 4.37 16 17 C 0.22 10.71 1.57 -11.29 -0.02 10.69 16 18 O -0.58 -30.47 13.54 -148.98 -2.02 -32.49 16 19 C -0.55 -27.48 8.69 25.60 0.22 -27.26 16 20 H 0.07 3.51 7.81 -2.91 -0.02 3.49 16 21 C 0.03 1.66 5.39 84.65 0.46 2.12 16 22 N -0.92 -45.66 11.01 21.44 0.24 -45.42 16 23 Si 0.97 38.92 29.54 68.60 2.03 40.95 16 24 H -0.28 -11.23 7.11 99.48 0.71 -10.53 16 25 H -0.28 -11.00 7.11 99.48 0.71 -10.29 16 26 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 27 C 0.10 4.64 8.04 83.17 0.67 5.31 16 28 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.02 0.91 7.15 -2.39 -0.02 0.89 16 30 H 0.08 1.88 6.24 -2.38 -0.01 1.87 16 31 H 0.05 1.90 6.97 -2.39 -0.02 1.88 16 32 H 0.05 1.26 7.92 -2.39 -0.02 1.24 16 33 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 34 H 0.08 1.72 4.26 -2.39 -0.01 1.71 16 35 H 0.06 2.00 7.61 -2.39 -0.02 1.98 16 36 H 0.08 2.28 5.27 -2.38 -0.01 2.27 16 37 H 0.13 2.15 7.86 -2.91 -0.02 2.13 16 38 H 0.14 1.57 8.06 -2.91 -0.02 1.54 16 39 H 0.14 1.55 8.06 -2.92 -0.02 1.52 16 40 H 0.13 1.95 8.06 -2.91 -0.02 1.93 16 41 H 0.11 2.56 7.84 -2.91 -0.02 2.53 16 42 H 0.06 2.67 7.08 -2.39 -0.02 2.66 16 43 H 0.09 3.63 8.10 -2.38 -0.02 3.61 16 44 H 0.39 20.53 6.33 -74.06 -0.47 20.06 16 45 H 0.28 13.05 8.31 -92.71 -0.77 12.28 16 46 H 0.10 4.03 8.10 -2.39 -0.02 4.01 16 47 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -59.03 370.81 2.25 -56.77 By element: Atomic # 1 Polarization: 44.82 SS G_CDS: 0.50 Total: 45.32 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: 4.73 Total: -7.61 kcal Atomic # 7 Polarization: -72.68 SS G_CDS: -2.94 Total: -75.62 kcal Atomic # 8 Polarization: -57.75 SS G_CDS: -2.07 Total: -59.82 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 2.03 Total: 40.95 kcal Total: -59.03 2.25 -56.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186820572.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.569 kcal (2) G-P(sol) polarization free energy of solvation -59.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds