Wall clock time and date at job start Tue Mar 31 2020 12:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47038 * 2 1 4 4 C 1.52999 * 109.47274 * 120.00411 * 2 1 3 5 5 H 1.09004 * 109.47093 * 52.15857 * 4 2 1 6 6 C 1.53000 * 109.46758 * 292.15820 * 4 2 1 7 7 C 1.50697 * 109.47305 * 68.20873 * 6 4 2 8 8 C 1.38240 * 120.00336 * 64.58410 * 7 6 4 9 9 C 1.38227 * 120.00221 * 180.02562 * 8 7 6 10 10 C 1.38239 * 119.99774 * 359.95822 * 9 8 7 11 11 C 1.38232 * 120.00276 * 0.27765 * 10 9 8 12 12 C 1.38230 * 119.99904 * 359.53416 * 11 10 9 13 13 C 1.50701 * 109.47097 * 172.15708 * 4 2 1 14 14 O 1.21282 * 119.99390 * 105.45391 * 13 4 2 15 15 N 1.34770 * 120.00057 * 285.45768 * 13 4 2 16 16 C 1.47067 * 136.05732 * 5.96498 * 15 13 4 17 17 C 1.53764 * 87.88820 * 152.96249 * 16 15 13 18 18 O 1.42903 * 114.39463 * 272.68020 * 17 16 15 19 19 C 1.50698 * 114.26513 * 139.79024 * 17 16 15 20 20 H 1.07996 * 119.99844 * 266.47434 * 19 17 16 21 21 C 1.37875 * 119.99678 * 86.48126 * 19 17 16 22 22 N 1.31514 * 120.00491 * 359.97438 * 21 19 17 23 23 Si 1.86799 * 119.99809 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47248 * 59.99701 * 23 21 19 25 25 H 1.48504 * 109.47436 * 179.97438 * 23 21 19 26 26 H 1.48506 * 109.47205 * 299.99858 * 23 21 19 27 27 C 1.47063 * 136.05730 * 186.33243 * 15 13 4 28 28 H 1.09001 * 109.47374 * 313.00059 * 1 2 3 29 29 H 1.08995 * 109.47560 * 73.00436 * 1 2 3 30 30 H 1.09006 * 109.47125 * 193.00261 * 1 2 3 31 31 H 1.09001 * 109.46892 * 240.00298 * 2 1 3 32 32 H 1.09002 * 109.46863 * 178.07208 * 3 2 1 33 33 H 1.09002 * 109.46942 * 298.07227 * 3 2 1 34 34 H 1.09000 * 109.46910 * 58.07070 * 3 2 1 35 35 H 1.08993 * 109.47205 * 308.20273 * 6 4 2 36 36 H 1.09007 * 109.46639 * 188.20325 * 6 4 2 37 37 H 1.08003 * 119.99441 * 0.02562 * 8 7 6 38 38 H 1.07998 * 120.00245 * 179.97438 * 9 8 7 39 39 H 1.08010 * 119.99936 * 179.97438 * 10 9 8 40 40 H 1.08000 * 120.00056 * 179.72482 * 11 10 9 41 41 H 1.08001 * 120.00527 * 180.21530 * 12 11 10 42 42 H 1.08997 * 113.46869 * 267.69442 * 16 15 13 43 43 H 1.09000 * 113.47067 * 38.13641 * 16 15 13 44 44 H 0.96706 * 113.99650 * 273.58498 * 18 17 16 45 45 H 0.96995 * 120.00185 * 180.02562 * 22 21 19 46 46 H 1.09007 * 113.47136 * 321.86877 * 27 15 13 47 47 H 1.09003 * 113.46968 * 92.24652 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.5668 -1.7005 1.3220 6 6 1.6971 0.1045 2.4906 7 6 0.2043 0.1055 2.6967 8 6 -0.4543 -1.0748 2.9870 9 6 -1.8236 -1.0740 3.1755 10 6 -2.5345 0.1073 3.0746 11 6 -1.8767 1.2868 2.7795 12 6 -0.5068 1.2866 2.5948 13 6 3.5345 -0.8914 1.1560 14 8 4.2669 -0.1971 1.8287 15 7 4.0571 -1.8150 0.3252 16 6 3.5360 -2.7380 -0.6942 17 6 4.9128 -2.6723 -1.3758 18 8 5.0604 -1.5972 -2.3055 19 6 5.4032 -3.9934 -1.9098 20 1 6.0403 -4.6186 -1.3020 21 6 5.0385 -4.4038 -3.1746 22 7 4.2623 -3.6426 -3.9147 23 14 5.6469 -6.0410 -3.8369 24 1 5.1757 -7.1381 -2.9539 25 1 5.1168 -6.2480 -5.2086 26 1 7.1315 -6.0389 -3.8746 27 6 5.3986 -2.3478 0.0437 28 1 -0.3634 0.7009 0.7516 29 1 -0.3634 0.3004 -0.9827 30 1 -0.3634 -1.0014 0.2312 31 1 1.8933 -0.5138 -0.8900 32 1 3.1295 1.4427 0.0346 33 1 1.7051 1.9463 -0.9068 34 1 1.6487 1.9662 0.8722 35 1 2.0457 1.1281 2.3538 36 1 2.1840 -0.3316 3.3630 37 1 0.1013 -1.9976 3.0664 38 1 -2.3381 -1.9961 3.4018 39 1 -3.6045 0.1080 3.2214 40 1 -2.4327 2.2089 2.6963 41 1 0.0077 2.2087 2.3677 42 1 3.2926 -3.7254 -0.3020 43 1 2.7321 -2.3126 -1.2948 44 1 4.7534 -1.8048 -3.1988 45 1 4.0055 -3.9315 -4.8043 46 1 6.1816 -1.5899 0.0719 47 1 5.6467 -3.2318 0.6313 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186820589.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:35 Heat of formation + Delta-G solvation = -44.303876 kcal Electronic energy + Delta-G solvation = -27597.833627 eV Core-core repulsion = 23938.992747 eV Total energy + Delta-G solvation = -3658.840880 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.76155 -40.61168 -39.23954 -37.21220 -35.89694 -34.12703 -33.09858 -31.84648 -31.02146 -29.71407 -28.11489 -27.35817 -26.85812 -25.41302 -23.40323 -22.28440 -22.14527 -20.75063 -19.66798 -19.19923 -18.03937 -17.40237 -17.32299 -17.04720 -16.68191 -16.20699 -15.98189 -15.82163 -15.49088 -15.07838 -14.78614 -14.39306 -14.34271 -14.09734 -14.06036 -13.80963 -13.56245 -13.46888 -13.40502 -13.27514 -12.89506 -12.79562 -12.74368 -12.46881 -12.23278 -12.21736 -12.12237 -11.93155 -11.82110 -11.58563 -11.43397 -11.31706 -10.84019 -10.61525 -10.22023 -9.68251 -9.56070 -9.33224 -8.27430 -6.44933 0.49943 0.56415 1.48148 1.50073 1.57359 1.62141 1.97742 2.40493 2.93126 2.94870 3.38413 3.65646 3.73569 3.77523 4.02312 4.08238 4.09574 4.21611 4.23363 4.32744 4.36255 4.43153 4.47004 4.51657 4.62891 4.67072 4.69929 4.77080 4.80356 4.85081 4.89606 4.95502 4.98726 5.01903 5.06321 5.18791 5.21595 5.24245 5.24408 5.38550 5.45842 5.65703 5.70913 5.72223 5.78977 5.90740 6.18554 6.60624 6.89607 7.15287 7.29329 7.48461 8.78355 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020008 B = 0.003347 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.113462 B = 8364.727562 C = 8738.343457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.080 4.080 3 C -0.144 4.144 4 C -0.078 4.078 5 H 0.097 0.903 6 C -0.059 4.059 7 C -0.072 4.072 8 C -0.133 4.133 9 C -0.121 4.121 10 C -0.129 4.129 11 C -0.121 4.121 12 C -0.124 4.124 13 C 0.535 3.465 14 O -0.593 6.593 15 N -0.636 5.636 16 C 0.087 3.913 17 C 0.222 3.778 18 O -0.586 6.586 19 C -0.555 4.555 20 H 0.074 0.926 21 C 0.033 3.967 22 N -0.916 5.916 23 Si 0.970 3.030 24 H -0.266 1.266 25 H -0.282 1.282 26 H -0.275 1.275 27 C 0.104 3.896 28 H 0.092 0.908 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.024 0.976 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.118 0.882 38 H 0.136 0.864 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.129 0.871 42 H 0.092 0.908 43 H 0.061 0.939 44 H 0.389 0.611 45 H 0.277 0.723 46 H 0.049 0.951 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.806 4.952 9.726 18.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.099 4.099 3 C -0.201 4.201 4 C -0.099 4.099 5 H 0.115 0.885 6 C -0.096 4.096 7 C -0.072 4.072 8 C -0.151 4.151 9 C -0.139 4.139 10 C -0.147 4.147 11 C -0.139 4.139 12 C -0.142 4.142 13 C 0.326 3.674 14 O -0.475 6.475 15 N -0.369 5.369 16 C -0.036 4.036 17 C 0.180 3.820 18 O -0.399 6.399 19 C -0.593 4.593 20 H 0.092 0.908 21 C -0.167 4.167 22 N -0.557 5.557 23 Si 0.795 3.205 24 H -0.191 1.191 25 H -0.208 1.208 26 H -0.200 1.200 27 C -0.019 4.019 28 H 0.110 0.890 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.044 0.956 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.136 0.864 38 H 0.154 0.846 39 H 0.159 0.841 40 H 0.160 0.840 41 H 0.147 0.853 42 H 0.110 0.890 43 H 0.079 0.921 44 H 0.244 0.756 45 H 0.087 0.913 46 H 0.068 0.932 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -14.369 5.786 10.545 18.739 hybrid contribution 0.603 -1.177 -1.095 1.717 sum -13.766 4.610 9.450 17.322 Atomic orbital electron populations 1.22336 0.92515 1.02990 1.03055 1.20962 0.97677 0.96188 0.95040 1.21889 0.99472 0.95892 1.02814 1.21324 0.89179 1.01506 0.97898 0.88496 1.20400 0.92423 1.01240 0.95547 1.19708 0.94285 0.94335 0.98891 1.21130 0.95349 0.97607 1.00973 1.21360 0.93720 0.99238 0.99575 1.21434 1.00940 0.92497 0.99850 1.21394 0.94026 0.99250 0.99247 1.21133 0.94957 0.97548 1.00527 1.20824 0.91588 0.78115 0.76840 1.90597 1.63456 1.46780 1.46685 1.49759 1.11952 1.36829 1.38334 1.24044 1.00925 0.91675 0.86940 1.19823 0.90827 0.85771 0.85552 1.86038 1.87298 1.40912 1.25617 1.21641 1.32613 1.03294 1.01715 0.90759 1.25762 0.93553 1.00976 0.96423 1.69320 1.35693 1.39284 1.11423 0.85416 0.78532 0.79156 0.77386 1.19092 1.20769 1.20038 1.23335 0.85711 0.97228 0.95643 0.89016 0.92681 0.92825 0.93057 0.95644 0.91566 0.90489 0.90152 0.91443 0.86351 0.84585 0.84099 0.84010 0.85284 0.88996 0.92058 0.75556 0.91338 0.93231 0.87862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 7.88 71.98 0.57 -3.11 16 2 C -0.08 -2.38 2.66 -10.79 -0.03 -2.41 16 3 C -0.14 -4.19 8.40 71.98 0.60 -3.59 16 4 C -0.08 -2.43 1.92 -11.54 -0.02 -2.45 16 5 H 0.10 2.84 7.32 -2.39 -0.02 2.82 16 6 C -0.06 -1.59 3.92 29.85 0.12 -1.48 16 7 C -0.07 -1.60 3.16 -19.86 -0.06 -1.66 16 8 C -0.13 -2.75 8.59 22.27 0.19 -2.56 16 9 C -0.12 -2.09 10.05 22.27 0.22 -1.86 16 10 C -0.13 -1.98 10.05 22.27 0.22 -1.75 16 11 C -0.12 -1.91 10.01 22.27 0.22 -1.69 16 12 C -0.12 -2.35 6.87 22.27 0.15 -2.19 16 13 C 0.53 21.69 6.36 87.66 0.56 22.25 16 14 O -0.59 -27.41 16.81 -3.04 -0.05 -27.46 16 15 N -0.64 -27.08 3.69 -858.22 -3.16 -30.24 16 16 C 0.09 3.72 7.73 83.27 0.64 4.36 16 17 C 0.22 10.71 1.58 -11.12 -0.02 10.70 16 18 O -0.59 -31.06 13.55 -148.98 -2.02 -33.08 16 19 C -0.55 -27.53 8.70 25.60 0.22 -27.31 16 20 H 0.07 3.55 7.81 -2.91 -0.02 3.53 16 21 C 0.03 1.63 5.39 84.65 0.46 2.09 16 22 N -0.92 -46.00 11.01 21.45 0.24 -45.77 16 23 Si 0.97 38.92 29.54 68.60 2.03 40.94 16 24 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 25 H -0.28 -11.15 7.11 99.48 0.71 -10.45 16 26 H -0.28 -11.05 7.11 99.48 0.71 -10.34 16 27 C 0.10 4.61 8.02 83.18 0.67 5.28 16 28 H 0.09 1.97 3.50 -2.39 -0.01 1.96 16 29 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.05 1.29 7.53 -2.38 -0.02 1.27 16 31 H 0.05 1.82 6.62 -2.39 -0.02 1.80 16 32 H 0.02 0.89 7.38 -2.39 -0.02 0.88 16 33 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.08 1.90 5.49 -2.39 -0.01 1.89 16 35 H 0.08 2.25 5.62 -2.39 -0.01 2.24 16 36 H 0.07 1.95 8.07 -2.38 -0.02 1.94 16 37 H 0.12 2.41 7.82 -2.91 -0.02 2.39 16 38 H 0.14 1.81 8.06 -2.91 -0.02 1.78 16 39 H 0.14 1.47 8.06 -2.91 -0.02 1.44 16 40 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 41 H 0.13 2.19 7.36 -2.91 -0.02 2.17 16 42 H 0.09 3.65 8.10 -2.39 -0.02 3.63 16 43 H 0.06 2.64 6.79 -2.39 -0.02 2.63 16 44 H 0.39 20.82 6.33 -74.05 -0.47 20.35 16 45 H 0.28 13.17 8.31 -92.71 -0.77 12.40 16 46 H 0.05 2.32 8.14 -2.38 -0.02 2.30 16 47 H 0.10 4.13 8.10 -2.39 -0.02 4.11 16 Total: -1.00 -59.59 367.95 2.26 -57.33 By element: Atomic # 1 Polarization: 45.15 SS G_CDS: 0.51 Total: 45.66 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: 4.72 Total: -7.39 kcal Atomic # 7 Polarization: -73.08 SS G_CDS: -2.93 Total: -76.01 kcal Atomic # 8 Polarization: -58.46 SS G_CDS: -2.07 Total: -60.53 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 2.03 Total: 40.94 kcal Total: -59.59 2.26 -57.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186820589.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.023 kcal (2) G-P(sol) polarization free energy of solvation -59.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds