Wall clock time and date at job start Tue Mar 31 2020 11:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47294 * 2 1 4 4 C 1.53003 * 109.47030 * 201.54726 * 3 2 1 5 5 C 1.52996 * 109.46823 * 81.55150 * 3 2 1 6 6 N 1.46495 * 109.47373 * 321.54861 * 3 2 1 7 7 C 1.46500 * 120.00251 * 134.32548 * 6 3 2 8 8 C 1.50707 * 109.46812 * 274.46671 * 7 6 3 9 9 H 1.07999 * 120.00220 * 4.81962 * 8 7 6 10 10 C 1.37878 * 119.99531 * 184.81877 * 8 7 6 11 11 N 1.31519 * 120.00375 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 119.99656 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.46935 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.46928 * 119.99751 * 12 10 8 15 15 H 1.48497 * 109.46869 * 239.99551 * 12 10 8 16 16 C 1.34778 * 119.99846 * 314.32587 * 6 3 2 17 17 O 1.21284 * 119.99966 * 188.10621 * 16 6 3 18 18 C 1.50707 * 120.00130 * 7.83379 * 16 6 3 19 19 H 1.09002 * 110.83209 * 51.74527 * 18 16 6 20 20 C 1.54713 * 110.93967 * 288.02022 * 18 16 6 21 21 O 1.43763 * 102.79193 * 216.48181 * 20 18 16 22 22 C 1.36135 * 109.28865 * 27.55275 * 21 20 18 23 23 C 1.39285 * 129.88019 * 161.46374 * 22 21 20 24 24 C 1.37932 * 120.24524 * 179.58159 * 23 22 21 25 25 C 1.38283 * 120.35256 * 0.02562 * 24 23 22 26 26 C 1.38353 * 119.76114 * 0.17299 * 25 24 23 27 27 C 1.37739 * 119.98062 * 359.97438 * 26 25 24 28 28 H 1.09002 * 109.46785 * 302.98092 * 1 2 3 29 29 H 1.09006 * 109.46884 * 62.97304 * 1 2 3 30 30 H 1.08996 * 109.47661 * 182.97405 * 1 2 3 31 31 H 1.09003 * 109.46829 * 240.00126 * 2 1 3 32 32 H 1.08996 * 109.46753 * 120.00281 * 2 1 3 33 33 H 1.08999 * 109.47113 * 203.56882 * 4 3 2 34 34 H 1.09005 * 109.47257 * 323.56911 * 4 3 2 35 35 H 1.08998 * 109.46837 * 83.56460 * 4 3 2 36 36 H 1.09004 * 109.47076 * 303.51269 * 5 3 2 37 37 H 1.08998 * 109.47709 * 63.51857 * 5 3 2 38 38 H 1.09008 * 109.46941 * 183.52144 * 5 3 2 39 39 H 1.08999 * 109.46761 * 34.46455 * 7 6 3 40 40 H 1.08999 * 109.47029 * 154.46845 * 7 6 3 41 41 H 0.96991 * 120.00197 * 180.02562 * 11 10 8 42 42 H 1.08997 * 110.75006 * 334.81341 * 20 18 16 43 43 H 1.09005 * 110.73847 * 98.16056 * 20 18 16 44 44 H 1.08002 * 119.87901 * 359.55744 * 23 22 21 45 45 H 1.07999 * 119.82276 * 179.97438 * 24 23 22 46 46 H 1.07998 * 120.12157 * 180.15547 * 25 24 23 47 47 H 1.08009 * 120.01149 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.4751 1.4760 -0.5298 5 6 2.0102 1.9939 1.4268 6 7 1.1831 2.2635 -0.8589 7 6 0.7193 3.5730 -0.3938 8 6 -0.5335 3.4001 0.4259 9 1 -0.8997 2.4091 0.6500 10 6 -1.2120 4.5071 0.8898 11 7 -0.7657 5.7139 0.6174 12 14 -2.7644 4.2928 1.9065 13 1 -3.0522 2.8453 2.0713 14 1 -2.5718 4.9148 3.2410 15 1 -3.9034 4.9479 1.2147 16 6 0.8214 1.8141 -2.0769 17 8 0.2374 2.5485 -2.8455 18 6 1.1480 0.4009 -2.4863 19 1 0.8072 -0.3095 -1.7331 20 6 2.6631 0.2390 -2.7541 21 8 2.6945 -0.6770 -3.8618 22 6 1.5478 -0.5484 -4.5842 23 6 1.2657 -0.9438 -5.8896 24 6 0.0161 -0.7195 -6.4288 25 6 -0.9673 -0.1001 -5.6795 26 6 -0.6939 0.2995 -4.3834 27 6 0.5543 0.0791 -3.8441 28 1 -0.3633 0.5594 0.8621 29 1 -0.3633 0.4670 -0.9155 30 1 -0.3634 -1.0262 0.0533 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.9788 2.3683 -0.1581 34 1 4.0090 0.5888 -0.1892 35 1 3.4596 1.4947 -1.6195 36 1 0.9996 1.9122 1.8268 37 1 2.6958 1.4217 2.0520 38 1 2.3141 3.0407 1.4182 39 1 1.4931 4.0360 0.2185 40 1 0.5065 4.2092 -1.2529 41 1 -1.2428 6.4926 0.9440 42 1 3.1108 1.1938 -3.0297 43 1 3.1651 -0.1879 -1.8857 44 1 2.0283 -1.4275 -6.4820 45 1 -0.1951 -1.0285 -7.4418 46 1 -1.9452 0.0715 -6.1045 47 1 -1.4589 0.7840 -3.7947 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187514971.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:58 Heat of formation + Delta-G solvation = 3.498233 kcal Electronic energy + Delta-G solvation = -28976.966181 eV Core-core repulsion = 25320.198156 eV Total energy + Delta-G solvation = -3656.768025 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.06168 -40.88563 -38.58971 -38.12484 -35.59950 -34.14634 -33.01815 -31.92973 -31.07462 -30.90579 -29.19343 -27.73160 -25.53664 -24.54751 -24.24503 -23.36002 -23.03305 -21.78822 -19.64186 -18.73529 -18.56552 -18.10938 -17.57209 -16.83870 -16.70295 -16.37727 -16.18845 -15.98456 -15.78730 -15.17338 -14.59468 -14.53650 -14.41296 -14.29387 -14.07192 -13.74882 -13.56726 -13.34641 -13.28592 -13.02648 -12.93789 -12.89375 -12.68272 -12.57799 -12.44597 -12.34877 -12.08249 -11.96539 -11.79497 -11.70993 -11.61051 -11.39718 -11.12212 -10.64649 -10.60162 -9.81374 -9.37495 -9.12942 -8.18320 -6.30059 0.32699 0.42516 1.34447 1.37008 1.47301 1.67785 2.15192 2.28166 2.42249 2.81829 3.11926 3.23146 3.49625 3.59383 3.76595 3.86745 3.97225 4.03488 4.12586 4.21371 4.22583 4.37993 4.45125 4.50616 4.56630 4.58372 4.68030 4.74439 4.78869 4.85243 4.92415 4.98703 5.05802 5.11444 5.13988 5.16578 5.26617 5.36261 5.39132 5.45545 5.48838 5.58431 5.62605 5.64292 5.69819 5.91122 6.12396 6.19244 6.75655 6.83517 7.31039 7.46872 8.89272 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015395 B = 0.005045 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.329031 B = 5549.235946 C = 6516.725850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.151 4.151 3 C 0.154 3.846 4 C -0.190 4.190 5 C -0.140 4.140 6 N -0.584 5.584 7 C 0.260 3.740 8 C -0.522 4.522 9 H 0.068 0.932 10 C 0.006 3.994 11 N -0.932 5.932 12 Si 0.957 3.043 13 H -0.263 1.263 14 H -0.274 1.274 15 H -0.288 1.288 16 C 0.518 3.482 17 O -0.589 6.589 18 C -0.133 4.133 19 H 0.173 0.827 20 C 0.058 3.942 21 O -0.305 6.305 22 C 0.084 3.916 23 C -0.144 4.144 24 C -0.079 4.079 25 C -0.154 4.154 26 C -0.071 4.071 27 C -0.173 4.173 28 H 0.050 0.950 29 H 0.034 0.966 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.057 0.943 34 H 0.110 0.890 35 H 0.070 0.930 36 H 0.054 0.946 37 H 0.093 0.907 38 H 0.041 0.959 39 H 0.024 0.976 40 H -0.007 1.007 41 H 0.263 0.737 42 H 0.076 0.924 43 H 0.161 0.839 44 H 0.153 0.847 45 H 0.169 0.831 46 H 0.146 0.854 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.995 -17.915 -5.329 20.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.188 4.188 3 C 0.070 3.930 4 C -0.247 4.247 5 C -0.198 4.198 6 N -0.315 5.315 7 C 0.139 3.861 8 C -0.560 4.560 9 H 0.086 0.914 10 C -0.192 4.192 11 N -0.572 5.572 12 Si 0.782 3.218 13 H -0.187 1.187 14 H -0.199 1.199 15 H -0.215 1.215 16 C 0.306 3.694 17 O -0.470 6.470 18 C -0.153 4.153 19 H 0.190 0.810 20 C -0.016 4.016 21 O -0.219 6.219 22 C 0.039 3.961 23 C -0.162 4.162 24 C -0.097 4.097 25 C -0.172 4.172 26 C -0.089 4.089 27 C -0.174 4.174 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.095 0.905 31 H 0.116 0.884 32 H 0.130 0.870 33 H 0.077 0.923 34 H 0.129 0.871 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.111 0.889 38 H 0.060 0.940 39 H 0.042 0.958 40 H 0.011 0.989 41 H 0.072 0.928 42 H 0.094 0.906 43 H 0.178 0.822 44 H 0.171 0.829 45 H 0.186 0.814 46 H 0.164 0.836 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.879 -17.467 -5.677 19.985 hybrid contribution -1.390 1.403 0.807 2.134 sum 6.489 -16.064 -4.870 17.996 Atomic orbital electron populations 1.22161 0.96719 1.01864 1.01579 1.22668 0.95685 0.95003 1.05415 1.20801 0.90071 0.90936 0.91233 1.23083 0.94632 1.04514 1.02476 1.22050 1.02894 1.00577 0.94234 1.48327 1.48691 1.19588 1.14891 1.18764 0.94037 0.80120 0.93164 1.21796 1.09540 0.93054 1.31633 0.91362 1.25791 1.00691 0.94878 0.97835 1.70079 1.41492 0.98445 1.47206 0.85517 0.79221 0.78570 0.78443 1.18659 1.19907 1.21482 1.20345 0.78742 0.88825 0.81462 1.90642 1.44327 1.59151 1.52906 1.22910 0.97876 0.96290 0.98225 0.81035 1.25000 0.93639 0.93469 0.89508 1.86814 1.37166 1.58081 1.39869 1.19861 0.85328 0.97730 0.93159 1.20619 0.99335 1.05297 0.90977 1.21275 0.91157 0.96372 1.00894 1.21344 1.01373 1.01040 0.93407 1.20445 0.95179 0.96896 0.96416 1.20565 0.95928 1.05398 0.95506 0.93052 0.94687 0.90483 0.88411 0.87027 0.92348 0.87103 0.91158 0.92739 0.88858 0.94031 0.95829 0.98934 0.92843 0.90596 0.82182 0.82938 0.81397 0.83602 0.88229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.90 7.69 71.98 0.55 -4.35 16 2 C -0.15 -3.46 4.25 30.59 0.13 -3.33 16 3 C 0.15 4.51 0.72 3.60 0.00 4.51 16 4 C -0.19 -4.27 7.44 71.98 0.54 -3.74 16 5 C -0.14 -4.33 7.15 71.98 0.51 -3.81 16 6 N -0.58 -24.08 1.76 -779.07 -1.37 -25.45 16 7 C 0.26 13.75 4.67 85.64 0.40 14.15 16 8 C -0.52 -28.62 7.91 25.60 0.20 -28.41 16 9 H 0.07 3.62 5.66 -2.91 -0.02 3.60 16 10 C 0.01 0.36 5.46 84.65 0.46 0.82 16 11 N -0.93 -56.45 13.29 21.45 0.28 -56.17 16 12 Si 0.96 44.48 29.54 68.60 2.03 46.51 16 13 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 14 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 15 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 16 C 0.52 22.05 4.97 87.66 0.44 22.49 16 17 O -0.59 -31.47 14.82 -3.04 -0.05 -31.51 16 18 C -0.13 -4.26 1.76 -11.40 -0.02 -4.28 16 19 H 0.17 4.85 2.95 -2.39 -0.01 4.84 16 20 C 0.06 1.47 4.80 72.57 0.35 1.82 16 21 O -0.30 -8.34 11.10 -95.08 -1.06 -9.39 16 22 C 0.08 2.48 7.04 22.68 0.16 2.64 16 23 C -0.14 -3.42 10.06 22.45 0.23 -3.19 16 24 C -0.08 -1.70 10.02 22.21 0.22 -1.48 16 25 C -0.15 -4.03 10.07 22.31 0.22 -3.80 16 26 C -0.07 -2.42 9.11 22.18 0.20 -2.22 16 27 C -0.17 -5.84 5.35 -19.53 -0.10 -5.95 16 28 H 0.05 1.75 5.70 -2.39 -0.01 1.74 16 29 H 0.03 1.26 4.50 -2.38 -0.01 1.25 16 30 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.10 1.91 3.15 -2.39 -0.01 1.90 16 32 H 0.11 1.84 7.96 -2.39 -0.02 1.82 16 33 H 0.06 1.41 7.93 -2.39 -0.02 1.39 16 34 H 0.11 1.52 7.64 -2.38 -0.02 1.50 16 35 H 0.07 1.67 3.29 -2.39 -0.01 1.67 16 36 H 0.05 1.95 6.03 -2.38 -0.01 1.94 16 37 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.04 1.50 6.32 -2.38 -0.02 1.48 16 39 H 0.02 1.28 6.21 -2.39 -0.01 1.26 16 40 H -0.01 -0.48 7.21 -2.39 -0.02 -0.49 16 41 H 0.26 15.05 8.31 -92.72 -0.77 14.28 16 42 H 0.08 2.12 6.37 -2.39 -0.02 2.10 16 43 H 0.16 2.83 4.50 -2.38 -0.01 2.82 16 44 H 0.15 2.71 8.06 -2.91 -0.02 2.68 16 45 H 0.17 2.20 8.06 -2.91 -0.02 2.17 16 46 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 47 H 0.10 3.81 7.92 -2.91 -0.02 3.79 16 Total: -1.00 -76.11 342.39 5.34 -70.77 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: 1.01 Total: 23.37 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: 4.49 Total: -18.13 kcal Atomic # 7 Polarization: -80.53 SS G_CDS: -1.09 Total: -81.62 kcal Atomic # 8 Polarization: -39.80 SS G_CDS: -1.10 Total: -40.90 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -76.11 5.34 -70.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187514971.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.268 kcal (2) G-P(sol) polarization free energy of solvation -76.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds