Wall clock time and date at job start Tue Mar 31 2020 11:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47018 * 2 1 4 4 C 1.53001 * 109.46893 * 120.00497 * 2 1 3 5 5 C 1.53005 * 109.46927 * 299.99454 * 4 2 1 6 6 C 1.50696 * 109.47160 * 180.02562 * 5 4 2 7 7 O 1.21284 * 119.99855 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00197 * 180.02562 * 6 5 4 9 9 C 1.47581 * 134.49354 * 180.02562 * 8 6 5 10 10 C 1.53945 * 86.11895 * 155.35947 * 9 8 6 11 11 O 1.42904 * 113.73986 * 269.15696 * 10 9 8 12 12 C 1.50694 * 113.74220 * 137.95139 * 10 9 8 13 13 H 1.08000 * 120.00563 * 0.02562 * 12 10 9 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 10 9 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 C 1.47582 * 134.48982 * 359.97438 * 8 6 5 21 21 C 1.50704 * 109.46772 * 240.00107 * 2 1 3 22 22 C 1.38240 * 119.99645 * 239.72508 * 21 2 1 23 23 C 1.38238 * 119.99741 * 179.76807 * 22 21 2 24 24 C 1.38236 * 119.99653 * 0.50694 * 23 22 21 25 25 C 1.38232 * 120.00346 * 359.75047 * 24 23 22 26 26 C 1.38229 * 120.00367 * 60.00173 * 21 2 1 27 27 H 1.09000 * 109.46863 * 299.99675 * 1 2 3 28 28 H 1.08998 * 109.47173 * 59.99906 * 1 2 3 29 29 H 1.09001 * 109.47293 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47210 * 179.97438 * 3 2 1 31 31 H 1.08991 * 109.47516 * 299.99818 * 3 2 1 32 32 H 1.09000 * 109.47038 * 60.00433 * 3 2 1 33 33 H 1.09008 * 109.46834 * 180.02562 * 4 2 1 34 34 H 1.09001 * 109.47451 * 59.99729 * 4 2 1 35 35 H 1.08994 * 109.46740 * 60.00432 * 5 4 2 36 36 H 1.09001 * 109.47279 * 300.00380 * 5 4 2 37 37 H 1.09001 * 113.77016 * 41.05438 * 9 8 6 38 38 H 1.09005 * 113.86980 * 269.67513 * 9 8 6 39 39 H 0.96699 * 113.99284 * 178.07513 * 11 10 9 40 40 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 41 41 H 1.09002 * 113.76615 * 90.34214 * 20 8 6 42 42 H 1.08991 * 113.77327 * 318.94082 * 20 8 6 43 43 H 1.07996 * 120.00102 * 0.02562 * 22 21 2 44 44 H 1.07993 * 120.00149 * 180.23045 * 23 22 21 45 45 H 1.08001 * 119.99570 * 179.71911 * 24 23 22 46 46 H 1.08001 * 120.00277 * 179.97438 * 25 24 23 47 47 H 1.08005 * 119.99585 * 0.02562 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.5300 -0.0001 2.4985 6 6 2.0328 -0.7102 3.7289 7 8 2.7307 -1.6958 3.6176 8 7 1.7069 -0.2500 4.9530 9 6 2.0097 -0.6769 6.3329 10 6 1.7562 0.7885 6.7305 11 8 2.9299 1.6032 6.7039 12 6 0.9621 0.9435 8.0018 13 1 0.6294 0.0688 8.5409 14 6 0.6602 2.2022 8.4770 15 7 1.0658 3.2675 7.8209 16 14 -0.3247 2.3943 10.0525 17 1 -1.7731 2.4406 9.7284 18 1 -0.0546 1.2416 10.9489 19 1 0.0707 3.6537 10.7329 20 6 0.9046 0.8838 5.4519 21 6 2.0323 -0.7104 -1.2305 22 6 2.8317 -1.8311 -1.1037 23 6 3.2885 -2.4856 -2.2324 24 6 2.9545 -2.0132 -3.4879 25 6 2.1595 -0.8895 -3.6147 26 6 1.6984 -0.2382 -2.4860 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9562 0.8900 33 1 3.1300 -0.7210 1.2494 34 1 1.6766 -1.7490 1.2492 35 1 0.4401 -0.0001 2.4985 36 1 1.8934 1.0276 2.4985 37 1 3.0411 -0.9991 6.4768 38 1 1.2839 -1.3766 6.7475 39 1 2.7697 2.5309 6.9245 40 1 0.8531 4.1529 8.1550 41 1 -0.1474 0.6435 5.6058 42 1 1.0539 1.8074 4.8927 43 1 3.0959 -2.1977 -0.1228 44 1 3.9099 -3.3632 -2.1333 45 1 3.3151 -2.5219 -4.3697 46 1 1.8989 -0.5202 -4.5956 47 1 1.0778 0.6402 -2.5850 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188675780.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:34 Heat of formation + Delta-G solvation = -57.715012 kcal Electronic energy + Delta-G solvation = -26450.670210 eV Core-core repulsion = 22791.247779 eV Total energy + Delta-G solvation = -3659.422431 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.34556 -40.70434 -39.15989 -37.53488 -35.79878 -34.12290 -32.69132 -31.80846 -30.60246 -29.85236 -28.15551 -27.42582 -26.98452 -25.66343 -23.52794 -22.86822 -21.68090 -19.98895 -19.66962 -19.25627 -18.19681 -17.65917 -17.18915 -16.83705 -16.56204 -15.98818 -15.86887 -15.76700 -15.53517 -14.95113 -14.72479 -14.60534 -14.39922 -14.26376 -14.15207 -13.79012 -13.65255 -13.39301 -13.22531 -13.19696 -12.83894 -12.74850 -12.67437 -12.42066 -12.25281 -12.22220 -12.19509 -12.11210 -11.67903 -11.41768 -11.39592 -11.28381 -10.90562 -10.62108 -10.22413 -9.77653 -9.55528 -9.54488 -8.26042 -6.42617 0.50616 0.53963 1.46678 1.50601 1.59214 1.67145 1.98951 2.41301 2.92527 2.96574 3.42395 3.59527 3.76618 3.91951 3.95855 4.16866 4.19413 4.20504 4.29519 4.33871 4.35487 4.37494 4.48906 4.54581 4.61138 4.67056 4.72998 4.82805 4.83572 4.90352 4.92491 4.99303 5.02351 5.02836 5.07950 5.19716 5.20927 5.25289 5.26906 5.36374 5.45916 5.65342 5.67274 5.73756 5.79645 5.94154 6.17291 6.62462 6.89175 7.17697 7.31145 7.48297 8.79835 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.029288 B = 0.002498 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.804835 B =11207.436291 C =11647.125231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.019 4.019 3 C -0.141 4.141 4 C -0.082 4.082 5 C -0.125 4.125 6 C 0.518 3.482 7 O -0.601 6.601 8 N -0.636 5.636 9 C 0.107 3.893 10 C 0.218 3.782 11 O -0.588 6.588 12 C -0.555 4.555 13 H 0.070 0.930 14 C 0.034 3.966 15 N -0.915 5.915 16 Si 0.968 3.032 17 H -0.270 1.270 18 H -0.273 1.273 19 H -0.284 1.284 20 C 0.093 3.907 21 C -0.076 4.076 22 C -0.143 4.143 23 C -0.130 4.130 24 C -0.134 4.134 25 C -0.124 4.124 26 C -0.121 4.121 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.051 0.949 30 H 0.046 0.954 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.112 0.888 36 H 0.102 0.898 37 H 0.054 0.946 38 H 0.100 0.900 39 H 0.388 0.612 40 H 0.276 0.724 41 H 0.094 0.906 42 H 0.071 0.929 43 H 0.114 0.886 44 H 0.129 0.871 45 H 0.140 0.860 46 H 0.144 0.856 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.202 -2.675 -19.832 20.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.019 4.019 3 C -0.198 4.198 4 C -0.120 4.120 5 C -0.164 4.164 6 C 0.310 3.690 7 O -0.484 6.484 8 N -0.369 5.369 9 C -0.015 4.015 10 C 0.177 3.823 11 O -0.400 6.400 12 C -0.593 4.593 13 H 0.088 0.912 14 C -0.167 4.167 15 N -0.556 5.556 16 Si 0.793 3.207 17 H -0.196 1.196 18 H -0.198 1.198 19 H -0.209 1.209 20 C -0.029 4.029 21 C -0.076 4.076 22 C -0.161 4.161 23 C -0.148 4.148 24 C -0.152 4.152 25 C -0.142 4.142 26 C -0.139 4.139 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.130 0.870 36 H 0.120 0.880 37 H 0.072 0.928 38 H 0.118 0.882 39 H 0.243 0.757 40 H 0.086 0.914 41 H 0.112 0.888 42 H 0.090 0.910 43 H 0.132 0.868 44 H 0.147 0.853 45 H 0.158 0.842 46 H 0.162 0.838 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.512 -3.599 -20.246 20.716 hybrid contribution -0.331 0.477 1.307 1.430 sum -2.843 -3.122 -18.939 19.404 Atomic orbital electron populations 1.21959 0.92517 1.02140 1.03095 1.19473 0.96547 0.95217 0.90713 1.21966 1.00815 0.94043 1.03022 1.21360 1.00181 0.98691 0.91785 1.21739 1.03478 1.00791 0.90437 1.21178 0.79767 0.83682 0.84389 1.90600 1.41601 1.29225 1.86993 1.50248 1.50860 1.31218 1.04578 1.23435 1.00290 0.98339 0.79467 1.20121 0.83237 0.86791 0.92165 1.86049 1.34592 1.26560 1.92809 1.21722 1.34672 0.93543 1.09397 0.91163 1.25728 0.95818 0.95193 0.99973 1.69376 1.46765 0.98857 1.40597 0.85402 0.78812 0.77469 0.79018 1.19558 1.19752 1.20909 1.24090 0.96589 0.87355 0.94878 1.19928 0.97282 0.95431 0.94914 1.21379 0.98902 0.96574 0.99206 1.21387 1.00262 1.00332 0.92849 1.21433 0.98839 0.97263 0.97617 1.21456 0.97631 0.95752 0.99337 1.21200 1.00565 1.00618 0.91534 0.91334 0.90858 0.93020 0.93438 0.90763 0.91542 0.92826 0.92247 0.87014 0.87969 0.92754 0.88217 0.75670 0.91403 0.88828 0.91040 0.86766 0.85262 0.84225 0.83844 0.84491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 7.93 71.98 0.57 -1.93 16 2 C -0.02 -0.41 0.63 -52.93 -0.03 -0.44 16 3 C -0.14 -2.72 7.93 71.98 0.57 -2.14 16 4 C -0.08 -2.22 2.22 30.60 0.07 -2.15 16 5 C -0.13 -3.62 4.74 29.85 0.14 -3.48 16 6 C 0.52 20.60 8.06 87.66 0.71 21.31 16 7 O -0.60 -27.83 16.71 -3.04 -0.05 -27.88 16 8 N -0.64 -26.45 3.61 -840.31 -3.03 -29.48 16 9 C 0.11 4.74 8.23 86.48 0.71 5.45 16 10 C 0.22 10.34 1.44 -10.89 -0.02 10.32 16 11 O -0.59 -30.41 13.48 -148.98 -2.01 -32.41 16 12 C -0.56 -27.32 8.62 25.60 0.22 -27.10 16 13 H 0.07 3.38 7.81 -2.91 -0.02 3.35 16 14 C 0.03 1.62 5.40 84.66 0.46 2.08 16 15 N -0.92 -45.11 11.09 21.45 0.24 -44.87 16 16 Si 0.97 38.74 29.54 68.60 2.03 40.77 16 17 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 18 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 19 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 20 C 0.09 3.83 8.00 86.47 0.69 4.52 16 21 C -0.08 -1.62 4.76 -19.86 -0.09 -1.72 16 22 C -0.14 -3.37 8.98 22.27 0.20 -3.17 16 23 C -0.13 -2.64 10.05 22.27 0.22 -2.42 16 24 C -0.13 -2.27 10.05 22.27 0.22 -2.04 16 25 C -0.12 -1.99 10.05 22.27 0.22 -1.76 16 26 C -0.12 -2.16 8.71 22.27 0.19 -1.97 16 27 H 0.07 1.17 6.43 -2.39 -0.02 1.15 16 28 H 0.07 1.06 7.39 -2.39 -0.02 1.04 16 29 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 31 H 0.07 1.15 7.39 -2.39 -0.02 1.13 16 32 H 0.07 1.26 6.43 -2.39 -0.02 1.24 16 33 H 0.05 1.63 7.46 -2.38 -0.02 1.61 16 34 H 0.06 1.73 7.48 -2.39 -0.02 1.71 16 35 H 0.11 2.76 6.43 -2.39 -0.02 2.75 16 36 H 0.10 2.79 6.43 -2.39 -0.02 2.78 16 37 H 0.05 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.10 4.01 8.09 -2.38 -0.02 3.99 16 39 H 0.39 20.21 6.46 -74.06 -0.48 19.73 16 40 H 0.28 12.88 8.31 -92.71 -0.77 12.11 16 41 H 0.09 3.59 8.09 -2.39 -0.02 3.57 16 42 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 43 H 0.11 2.97 5.90 -2.91 -0.02 2.95 16 44 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16 45 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 46 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 47 H 0.14 1.89 7.10 -2.91 -0.02 1.86 16 Total: -1.00 -60.17 375.48 2.73 -57.44 By element: Atomic # 1 Polarization: 42.58 SS G_CDS: 0.49 Total: 43.08 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: 5.06 Total: -6.65 kcal Atomic # 7 Polarization: -71.55 SS G_CDS: -2.79 Total: -74.35 kcal Atomic # 8 Polarization: -58.23 SS G_CDS: -2.06 Total: -60.29 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 2.03 Total: 40.77 kcal Total: -60.17 2.73 -57.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188675780.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.276 kcal (2) G-P(sol) polarization free energy of solvation -60.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds