Wall clock time and date at job start Tue Mar 31 2020 11:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47264 * 2 1 4 4 C 1.53001 * 109.46680 * 299.52880 * 3 2 1 5 5 C 1.52999 * 109.47324 * 179.53041 * 3 2 1 6 6 N 1.46501 * 109.47294 * 59.52756 * 3 2 1 7 7 C 1.46496 * 120.00116 * 17.10759 * 6 3 2 8 8 C 1.50697 * 109.47326 * 95.58316 * 7 6 3 9 9 H 1.08001 * 119.99795 * 0.02562 * 8 7 6 10 10 C 1.37882 * 119.99875 * 179.97438 * 8 7 6 11 11 N 1.31518 * 119.99571 * 179.97438 * 10 8 7 12 12 Si 1.86793 * 120.00231 * 0.02562 * 10 8 7 13 13 H 1.48499 * 109.47409 * 89.99548 * 12 10 8 14 14 H 1.48493 * 109.47313 * 210.00082 * 12 10 8 15 15 H 1.48506 * 109.47042 * 329.99991 * 12 10 8 16 16 C 1.34781 * 120.00035 * 197.38002 * 6 3 2 17 17 O 1.21279 * 120.00296 * 183.59757 * 16 6 3 18 18 C 1.50704 * 119.99811 * 3.60094 * 16 6 3 19 19 H 1.08997 * 110.66889 * 45.81335 * 18 16 6 20 20 C 1.54709 * 110.74829 * 282.59700 * 18 16 6 21 21 C 1.51643 * 101.92458 * 266.96072 * 20 18 16 22 22 C 1.37743 * 132.17234 * 164.59188 * 21 20 18 23 23 C 1.38353 * 119.97980 * 180.35818 * 22 21 20 24 24 C 1.38285 * 119.76461 * 0.02562 * 23 22 21 25 25 C 1.37929 * 120.35188 * 359.81221 * 24 23 22 26 26 C 1.38883 * 107.04402 * 344.61540 * 21 20 18 27 27 O 1.36578 * 111.29096 * 358.90434 * 26 21 20 28 28 H 1.09001 * 109.47439 * 185.37030 * 1 2 3 29 29 H 1.09005 * 109.47331 * 305.37926 * 1 2 3 30 30 H 1.09003 * 109.46868 * 65.37523 * 1 2 3 31 31 H 1.08991 * 109.47549 * 239.99540 * 2 1 3 32 32 H 1.09007 * 109.46627 * 119.99335 * 2 1 3 33 33 H 1.09000 * 109.46997 * 220.47964 * 4 3 2 34 34 H 1.09001 * 109.47569 * 340.47922 * 4 3 2 35 35 H 1.09004 * 109.47274 * 100.48047 * 4 3 2 36 36 H 1.09002 * 109.47231 * 262.19997 * 5 3 2 37 37 H 1.09003 * 109.46656 * 22.19884 * 5 3 2 38 38 H 1.08997 * 109.47144 * 142.19985 * 5 3 2 39 39 H 1.08998 * 109.47225 * 215.58767 * 7 6 3 40 40 H 1.09007 * 109.46899 * 335.58292 * 7 6 3 41 41 H 0.96997 * 119.99213 * 180.02562 * 11 10 8 42 42 H 1.08996 * 110.94013 * 25.11223 * 20 18 16 43 43 H 1.09001 * 110.93944 * 148.80296 * 20 18 16 44 44 H 1.07999 * 120.00844 * 0.34497 * 22 21 20 45 45 H 1.07993 * 120.11851 * 180.02562 * 23 22 21 46 46 H 1.08003 * 119.82181 * 179.82744 * 24 23 22 47 47 H 1.08003 * 119.88014 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5397 2.1602 -1.2552 5 6 3.5700 1.4425 0.0118 6 7 1.5425 2.1364 1.1904 7 6 1.0226 1.3667 2.3233 8 6 2.1136 1.1783 3.3456 9 1 3.0959 1.5910 3.1693 10 6 1.8574 0.4799 4.5065 11 7 2.8097 0.3150 5.3985 12 14 0.1582 -0.2334 4.8118 13 1 0.0937 -1.6115 4.2624 14 1 -0.1084 -0.2697 6.2721 15 1 -0.8618 0.6141 4.1433 16 6 1.5579 3.4832 1.2412 17 8 1.2073 4.0561 2.2510 18 6 2.0108 4.2772 0.0430 19 1 1.5528 3.8932 -0.8685 20 6 3.5536 4.2646 -0.0715 21 6 3.9337 5.5275 0.6769 22 6 5.1324 5.9748 1.1871 23 6 5.1931 7.1900 1.8457 24 6 4.0475 7.9510 1.9893 25 6 2.8467 7.5066 1.4762 26 6 2.7779 6.2862 0.8084 27 8 1.7119 5.6730 0.2143 28 1 -0.3634 -1.0231 0.0962 29 1 -0.3634 0.5950 0.8379 30 1 -0.3633 0.4282 -0.9342 31 1 1.8934 -0.5138 -0.8898 32 1 1.8933 -0.5138 0.8901 33 1 2.3349 2.7892 -1.6554 34 1 1.2481 1.4231 -2.0034 35 1 0.6796 2.7797 -1.0010 36 1 3.9255 1.5848 1.0324 37 1 3.9362 0.4899 -0.3711 38 1 3.9382 2.2528 -0.6174 39 1 0.1893 1.9042 2.7760 40 1 0.6798 0.3927 1.9740 41 1 2.6296 -0.1766 6.2149 42 1 3.9731 3.3832 0.4136 43 1 3.8673 4.3202 -1.1139 44 1 6.0246 5.3769 1.0733 45 1 6.1319 7.5430 2.2462 46 1 4.0932 8.8985 2.5056 47 1 1.9567 8.1073 1.5924 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189900754.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:24 Heat of formation + Delta-G solvation = 16.599996 kcal Electronic energy + Delta-G solvation = -28772.430588 eV Core-core repulsion = 25116.230697 eV Total energy + Delta-G solvation = -3656.199890 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.51087 -39.53803 -37.33693 -36.64418 -33.46738 -32.72701 -31.78594 -31.13590 -29.90544 -29.11536 -27.89518 -27.19038 -24.13043 -23.49093 -22.44889 -21.82924 -21.38328 -20.66409 -18.58877 -17.07814 -17.02284 -16.81817 -16.28339 -15.62455 -15.16430 -14.91813 -14.62186 -14.29081 -14.07748 -13.73878 -13.61748 -13.44052 -13.24189 -13.09125 -12.89464 -12.55083 -12.45736 -12.26138 -11.95437 -11.77514 -11.60360 -11.56695 -11.35711 -11.08418 -11.02625 -10.96917 -10.71600 -10.68531 -10.48485 -10.25521 -10.10093 -10.01381 -9.44834 -9.04351 -8.70530 -8.56077 -7.87448 -7.73421 -6.06928 -4.03897 1.46688 1.56871 3.10051 3.24532 3.32354 3.37362 3.39981 3.82688 3.94971 4.39704 4.52724 4.64321 4.72001 4.85074 5.00499 5.05315 5.13353 5.17614 5.26122 5.33220 5.39905 5.45303 5.49405 5.55108 5.58691 5.64380 5.74867 5.79331 5.85119 5.90965 5.98941 6.01904 6.12997 6.19706 6.22600 6.46267 6.46606 6.48529 6.58699 6.62727 6.65447 6.72054 6.76427 6.96179 7.32616 7.37893 7.63277 8.21247 8.48405 8.92671 8.98621 9.53524 11.06669 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013324 B = 0.005372 C = 0.004491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.045052 B = 5210.694180 C = 6233.027765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.122 4.122 3 C 0.166 3.834 4 C -0.182 4.182 5 C -0.181 4.181 6 N -0.580 5.580 7 C 0.202 3.798 8 C -0.519 4.519 9 H 0.073 0.927 10 C 0.072 3.928 11 N -0.898 5.898 12 Si 0.868 3.132 13 H -0.275 1.275 14 H -0.284 1.284 15 H -0.265 1.265 16 C 0.495 3.505 17 O -0.515 6.515 18 C 0.023 3.977 19 H 0.168 0.832 20 C -0.118 4.118 21 C -0.168 4.168 22 C -0.069 4.069 23 C -0.153 4.153 24 C -0.089 4.089 25 C -0.137 4.137 26 C 0.118 3.882 27 O -0.283 6.283 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.050 0.950 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.032 0.968 40 H 0.051 0.949 41 H 0.263 0.737 42 H 0.120 0.880 43 H 0.095 0.905 44 H 0.123 0.877 45 H 0.125 0.875 46 H 0.127 0.873 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.867 6.023 -16.116 17.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.160 4.160 3 C 0.081 3.919 4 C -0.239 4.239 5 C -0.239 4.239 6 N -0.314 5.314 7 C 0.082 3.918 8 C -0.558 4.558 9 H 0.091 0.909 10 C -0.130 4.130 11 N -0.536 5.536 12 Si 0.695 3.305 13 H -0.200 1.200 14 H -0.210 1.210 15 H -0.189 1.189 16 C 0.280 3.720 17 O -0.390 6.390 18 C -0.036 4.036 19 H 0.184 0.816 20 C -0.155 4.155 21 C -0.169 4.169 22 C -0.087 4.087 23 C -0.171 4.171 24 C -0.107 4.107 25 C -0.155 4.155 26 C 0.072 3.928 27 O -0.196 6.196 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.105 0.895 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.050 0.950 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.138 0.862 43 H 0.113 0.887 44 H 0.141 0.859 45 H 0.143 0.857 46 H 0.145 0.855 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.474 6.329 -15.445 16.756 hybrid contribution -0.671 -0.616 0.508 1.043 sum 0.803 5.713 -14.937 16.012 Atomic orbital electron populations 1.22155 0.95849 1.01943 1.02473 1.21850 0.96285 0.94525 1.03303 1.20340 0.93820 0.93142 0.84640 1.23022 1.01641 1.01174 0.98086 1.22968 0.94794 1.02163 1.03946 1.48078 1.61590 1.04477 1.17216 1.20044 0.95873 0.91692 0.84166 1.21303 0.98033 1.34362 1.02081 0.90858 1.24836 0.96521 0.95961 0.95682 1.69894 1.32558 1.41717 1.09479 0.86960 0.85677 0.79716 0.78136 1.20038 1.20974 1.18915 1.20441 0.79709 0.82970 0.88889 1.90717 1.46893 1.69446 1.31964 1.24974 0.97022 0.80937 1.00642 0.81587 1.22401 0.93643 0.98212 1.01231 1.20751 0.94405 0.97921 1.03849 1.20263 0.96128 0.95805 0.96543 1.20962 0.98636 0.95273 1.02226 1.20809 0.91782 0.99621 0.98465 1.20230 0.98981 0.95727 1.00593 1.19675 0.86186 0.94084 0.92816 1.87014 1.38664 1.19979 1.73939 0.92860 0.90785 0.93103 0.91171 0.89452 0.91164 0.90802 0.90815 0.90111 0.91762 0.91492 0.94967 0.93169 0.92676 0.86216 0.88666 0.85925 0.85724 0.85467 0.85712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 8.73 37.16 0.32 -1.96 16 2 C -0.12 -1.71 3.96 -26.73 -0.11 -1.81 16 3 C 0.17 2.42 0.67 -131.82 -0.09 2.34 16 4 C -0.18 -1.98 6.26 37.16 0.23 -1.75 16 5 C -0.18 -2.49 7.44 37.16 0.28 -2.22 16 6 N -0.58 -11.42 2.03 -160.18 -0.33 -11.75 16 7 C 0.20 4.77 2.42 -5.20 -0.01 4.76 16 8 C -0.52 -14.62 9.90 -34.44 -0.34 -14.96 16 9 H 0.07 2.28 7.65 -52.49 -0.40 1.88 16 10 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 11 N -0.90 -27.64 13.96 55.43 0.77 -26.86 16 12 Si 0.87 21.39 27.47 -169.99 -4.67 16.72 16 13 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 14 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 15 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 16 C 0.50 10.43 6.34 -10.98 -0.07 10.36 16 17 O -0.52 -13.64 16.08 -13.23 -0.21 -13.85 16 18 C 0.02 0.37 2.80 -26.98 -0.08 0.30 16 19 H 0.17 2.13 3.28 -54.77 -0.18 1.95 16 20 C -0.12 -1.69 4.06 -26.52 -0.11 -1.80 16 21 C -0.17 -2.75 6.26 -104.10 -0.65 -3.40 16 22 C -0.07 -1.01 10.03 -39.72 -0.40 -1.41 16 23 C -0.15 -2.04 10.07 -39.52 -0.40 -2.43 16 24 C -0.09 -1.20 10.02 -39.68 -0.40 -1.60 16 25 C -0.14 -2.16 10.06 -39.31 -0.40 -2.55 16 26 C 0.12 2.09 6.72 -38.95 -0.26 1.83 16 27 O -0.28 -5.18 10.52 -40.39 -0.42 -5.60 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 1.22 5.14 -51.93 -0.27 0.95 16 30 H 0.05 0.58 7.11 -51.93 -0.37 0.21 16 31 H 0.07 0.77 8.11 -51.93 -0.42 0.35 16 32 H 0.09 1.47 7.07 -51.93 -0.37 1.10 16 33 H 0.07 0.63 4.99 -51.93 -0.26 0.37 16 34 H 0.07 0.65 7.21 -51.93 -0.37 0.27 16 35 H 0.07 0.87 5.96 -51.93 -0.31 0.56 16 36 H 0.08 1.43 7.10 -51.93 -0.37 1.06 16 37 H 0.06 0.77 7.73 -51.93 -0.40 0.37 16 38 H 0.07 0.74 4.35 -51.93 -0.23 0.52 16 39 H 0.03 0.85 6.70 -51.93 -0.35 0.50 16 40 H 0.05 1.09 3.29 -51.92 -0.17 0.92 16 41 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 42 H 0.12 1.80 4.11 -51.93 -0.21 1.58 16 43 H 0.10 1.02 7.86 -51.93 -0.41 0.61 16 44 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 45 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 46 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 47 H 0.12 1.77 8.06 -52.48 -0.42 1.35 16 LS Contribution 348.35 15.07 5.25 5.25 Total: -1.00 -35.63 348.35 -8.54 -44.17 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -6.37 Total: 6.26 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: -2.57 Total: -14.33 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.45 Total: -38.61 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.64 Total: -19.45 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.63 -8.54 -44.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189900754.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.769 kcal (2) G-P(sol) polarization free energy of solvation -35.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds