Wall clock time and date at job start Tue Mar 31 2020 11:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47264 * 2 1 4 4 C 1.53001 * 109.46680 * 299.52880 * 3 2 1 5 5 C 1.52999 * 109.47324 * 179.53041 * 3 2 1 6 6 N 1.46501 * 109.47294 * 59.52756 * 3 2 1 7 7 C 1.46496 * 120.00116 * 17.10759 * 6 3 2 8 8 C 1.50697 * 109.47326 * 95.58316 * 7 6 3 9 9 H 1.08001 * 119.99795 * 0.02562 * 8 7 6 10 10 C 1.37882 * 119.99875 * 179.97438 * 8 7 6 11 11 N 1.31518 * 119.99571 * 179.97438 * 10 8 7 12 12 Si 1.86793 * 120.00231 * 0.02562 * 10 8 7 13 13 H 1.48499 * 109.47409 * 89.99548 * 12 10 8 14 14 H 1.48493 * 109.47313 * 210.00082 * 12 10 8 15 15 H 1.48506 * 109.47042 * 329.99991 * 12 10 8 16 16 C 1.34781 * 120.00035 * 197.38002 * 6 3 2 17 17 O 1.21279 * 120.00296 * 183.59757 * 16 6 3 18 18 C 1.50704 * 119.99811 * 3.60094 * 16 6 3 19 19 H 1.08997 * 110.66889 * 45.81335 * 18 16 6 20 20 C 1.54709 * 110.74829 * 282.59700 * 18 16 6 21 21 C 1.51643 * 101.92458 * 266.96072 * 20 18 16 22 22 C 1.37743 * 132.17234 * 164.59188 * 21 20 18 23 23 C 1.38353 * 119.97980 * 180.35818 * 22 21 20 24 24 C 1.38285 * 119.76461 * 0.02562 * 23 22 21 25 25 C 1.37929 * 120.35188 * 359.81221 * 24 23 22 26 26 C 1.38883 * 107.04402 * 344.61540 * 21 20 18 27 27 O 1.36578 * 111.29096 * 358.90434 * 26 21 20 28 28 H 1.09001 * 109.47439 * 185.37030 * 1 2 3 29 29 H 1.09005 * 109.47331 * 305.37926 * 1 2 3 30 30 H 1.09003 * 109.46868 * 65.37523 * 1 2 3 31 31 H 1.08991 * 109.47549 * 239.99540 * 2 1 3 32 32 H 1.09007 * 109.46627 * 119.99335 * 2 1 3 33 33 H 1.09000 * 109.46997 * 220.47964 * 4 3 2 34 34 H 1.09001 * 109.47569 * 340.47922 * 4 3 2 35 35 H 1.09004 * 109.47274 * 100.48047 * 4 3 2 36 36 H 1.09002 * 109.47231 * 262.19997 * 5 3 2 37 37 H 1.09003 * 109.46656 * 22.19884 * 5 3 2 38 38 H 1.08997 * 109.47144 * 142.19985 * 5 3 2 39 39 H 1.08998 * 109.47225 * 215.58767 * 7 6 3 40 40 H 1.09007 * 109.46899 * 335.58292 * 7 6 3 41 41 H 0.96997 * 119.99213 * 180.02562 * 11 10 8 42 42 H 1.08996 * 110.94013 * 25.11223 * 20 18 16 43 43 H 1.09001 * 110.93944 * 148.80296 * 20 18 16 44 44 H 1.07999 * 120.00844 * 0.34497 * 22 21 20 45 45 H 1.07993 * 120.11851 * 180.02562 * 23 22 21 46 46 H 1.08003 * 119.82181 * 179.82744 * 24 23 22 47 47 H 1.08003 * 119.88014 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5397 2.1602 -1.2552 5 6 3.5700 1.4425 0.0118 6 7 1.5425 2.1364 1.1904 7 6 1.0226 1.3667 2.3233 8 6 2.1136 1.1783 3.3456 9 1 3.0959 1.5910 3.1693 10 6 1.8574 0.4799 4.5065 11 7 2.8097 0.3150 5.3985 12 14 0.1582 -0.2334 4.8118 13 1 0.0937 -1.6115 4.2624 14 1 -0.1084 -0.2697 6.2721 15 1 -0.8618 0.6141 4.1433 16 6 1.5579 3.4832 1.2412 17 8 1.2073 4.0561 2.2510 18 6 2.0108 4.2772 0.0430 19 1 1.5528 3.8932 -0.8685 20 6 3.5536 4.2646 -0.0715 21 6 3.9337 5.5275 0.6769 22 6 5.1324 5.9748 1.1871 23 6 5.1931 7.1900 1.8457 24 6 4.0475 7.9510 1.9893 25 6 2.8467 7.5066 1.4762 26 6 2.7779 6.2862 0.8084 27 8 1.7119 5.6730 0.2143 28 1 -0.3634 -1.0231 0.0962 29 1 -0.3634 0.5950 0.8379 30 1 -0.3633 0.4282 -0.9342 31 1 1.8934 -0.5138 -0.8898 32 1 1.8933 -0.5138 0.8901 33 1 2.3349 2.7892 -1.6554 34 1 1.2481 1.4231 -2.0034 35 1 0.6796 2.7797 -1.0010 36 1 3.9255 1.5848 1.0324 37 1 3.9362 0.4899 -0.3711 38 1 3.9382 2.2528 -0.6174 39 1 0.1893 1.9042 2.7760 40 1 0.6798 0.3927 1.9740 41 1 2.6296 -0.1766 6.2149 42 1 3.9731 3.3832 0.4136 43 1 3.8673 4.3202 -1.1139 44 1 6.0246 5.3769 1.0733 45 1 6.1319 7.5430 2.2462 46 1 4.0932 8.8985 2.5056 47 1 1.9567 8.1073 1.5924 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189900754.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:24 Heat of formation + Delta-G solvation = -6.388941 kcal Electronic energy + Delta-G solvation = -28773.427463 eV Core-core repulsion = 25116.230697 eV Total energy + Delta-G solvation = -3657.196765 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.80274 -40.86817 -38.65169 -38.07688 -35.29520 -34.15597 -33.45573 -32.43111 -31.05491 -30.30009 -29.48819 -28.46868 -25.55135 -24.64194 -24.00919 -23.25698 -22.52642 -22.01459 -20.00275 -19.15215 -18.31179 -18.08280 -17.71058 -16.81053 -16.76188 -16.35348 -16.08164 -15.84337 -15.27957 -15.01132 -14.90973 -14.76758 -14.64356 -14.42472 -14.29227 -14.00333 -13.76408 -13.52171 -13.37251 -13.20625 -12.99501 -12.79493 -12.63005 -12.52396 -12.40547 -12.23067 -12.08702 -11.99561 -11.89251 -11.71919 -11.61907 -11.50357 -11.11827 -10.80011 -10.64677 -9.84132 -9.42943 -9.10219 -8.33777 -6.35756 0.33008 0.39617 1.25277 1.31029 1.40668 1.59180 1.99559 2.28336 2.45101 2.79923 2.99829 3.35692 3.40227 3.53029 3.76053 3.91960 3.98050 4.05051 4.13777 4.20438 4.28697 4.41714 4.49422 4.51519 4.56440 4.63484 4.69940 4.70625 4.75242 4.80418 4.85291 4.93451 4.95739 4.97776 5.07609 5.17000 5.19505 5.34214 5.36418 5.39779 5.43234 5.47463 5.51587 5.58517 5.62219 5.70691 6.17327 6.26222 6.63217 6.67682 7.21339 7.37225 8.83564 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013324 B = 0.005372 C = 0.004491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.045052 B = 5210.694180 C = 6233.027765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.123 4.123 3 C 0.152 3.848 4 C -0.182 4.182 5 C -0.177 4.177 6 N -0.577 5.577 7 C 0.214 3.786 8 C -0.520 4.520 9 H 0.025 0.975 10 C 0.010 3.990 11 N -0.947 5.947 12 Si 0.937 3.063 13 H -0.244 1.244 14 H -0.284 1.284 15 H -0.259 1.259 16 C 0.482 3.518 17 O -0.588 6.588 18 C 0.030 3.970 19 H 0.209 0.791 20 C -0.113 4.113 21 C -0.189 4.189 22 C -0.084 4.084 23 C -0.151 4.151 24 C -0.090 4.090 25 C -0.158 4.158 26 C 0.077 3.923 27 O -0.302 6.302 28 H 0.064 0.936 29 H 0.038 0.962 30 H 0.081 0.919 31 H 0.113 0.887 32 H 0.049 0.951 33 H 0.097 0.903 34 H 0.111 0.889 35 H 0.066 0.934 36 H 0.029 0.971 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.000 1.000 40 H 0.079 0.921 41 H 0.266 0.734 42 H 0.110 0.890 43 H 0.144 0.856 44 H 0.144 0.856 45 H 0.158 0.842 46 H 0.160 0.840 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.835 5.395 -19.581 20.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.161 4.161 3 C 0.069 3.931 4 C -0.238 4.238 5 C -0.234 4.234 6 N -0.309 5.309 7 C 0.093 3.907 8 C -0.559 4.559 9 H 0.043 0.957 10 C -0.188 4.188 11 N -0.588 5.588 12 Si 0.759 3.241 13 H -0.168 1.168 14 H -0.210 1.210 15 H -0.184 1.184 16 C 0.270 3.730 17 O -0.468 6.468 18 C -0.028 4.028 19 H 0.225 0.775 20 C -0.149 4.149 21 C -0.190 4.190 22 C -0.102 4.102 23 C -0.169 4.169 24 C -0.108 4.108 25 C -0.177 4.177 26 C 0.032 3.968 27 O -0.215 6.215 28 H 0.083 0.917 29 H 0.057 0.943 30 H 0.099 0.901 31 H 0.131 0.869 32 H 0.068 0.932 33 H 0.115 0.885 34 H 0.129 0.871 35 H 0.085 0.915 36 H 0.048 0.952 37 H 0.104 0.896 38 H 0.117 0.883 39 H 0.018 0.982 40 H 0.097 0.903 41 H 0.075 0.925 42 H 0.127 0.873 43 H 0.162 0.838 44 H 0.162 0.838 45 H 0.175 0.825 46 H 0.177 0.823 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.464 5.676 -18.975 19.860 hybrid contribution -0.530 -0.363 1.622 1.744 sum 0.935 5.312 -17.354 18.173 Atomic orbital electron populations 1.22127 0.95443 1.02275 1.02569 1.21915 0.96646 0.93929 1.03576 1.20860 0.94316 0.93799 0.84156 1.22991 1.02135 1.02196 0.96496 1.22935 0.94294 1.04673 1.01542 1.48176 1.60654 1.04407 1.17686 1.19714 0.93268 0.93005 0.84761 1.21527 0.97308 1.33375 1.03657 0.95700 1.25792 1.01072 0.96581 0.95320 1.70058 1.35151 1.43266 1.10279 0.85872 0.79967 0.80238 0.77984 1.16804 1.20984 1.18372 1.21534 0.78344 0.83415 0.89711 1.90663 1.50208 1.70933 1.35036 1.25263 0.98715 0.79649 0.99143 0.77544 1.22517 0.91799 0.96885 1.03690 1.21142 0.94682 0.98603 1.04562 1.20686 0.96439 0.96669 0.96387 1.21446 0.99902 0.94627 1.00952 1.21243 0.90993 1.00846 0.97727 1.20609 1.00335 0.95749 1.00960 1.20109 0.86699 0.95384 0.94615 1.86976 1.39614 1.20693 1.74202 0.91691 0.94296 0.90057 0.86867 0.93181 0.88511 0.87077 0.91517 0.95232 0.89593 0.88322 0.98159 0.90315 0.92515 0.87257 0.83836 0.83814 0.82485 0.82256 0.85273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.10 8.73 71.98 0.63 -3.47 16 2 C -0.12 -3.13 3.96 30.59 0.12 -3.01 16 3 C 0.15 4.16 0.67 3.60 0.00 4.16 16 4 C -0.18 -3.14 6.26 71.98 0.45 -2.68 16 5 C -0.18 -4.62 7.44 71.98 0.54 -4.08 16 6 N -0.58 -23.29 2.03 -779.08 -1.58 -24.87 16 7 C 0.21 10.55 2.42 85.63 0.21 10.76 16 8 C -0.52 -31.16 9.90 25.60 0.25 -30.91 16 9 H 0.02 1.68 7.65 -2.91 -0.02 1.66 16 10 C 0.01 0.58 5.47 84.66 0.46 1.05 16 11 N -0.95 -61.15 13.96 21.45 0.30 -60.85 16 12 Si 0.94 45.35 27.47 68.60 1.88 47.23 16 13 H -0.24 -10.59 7.11 99.48 0.71 -9.88 16 14 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 15 H -0.26 -12.26 6.54 99.48 0.65 -11.61 16 16 C 0.48 21.10 6.34 87.66 0.56 21.66 16 17 O -0.59 -33.35 16.08 14.94 0.24 -33.11 16 18 C 0.03 0.95 2.80 30.43 0.09 1.04 16 19 H 0.21 4.68 3.28 -5.06 -0.02 4.66 16 20 C -0.11 -3.04 4.06 30.73 0.12 -2.92 16 21 C -0.19 -6.13 6.26 -19.53 -0.12 -6.25 16 22 C -0.08 -2.36 10.03 22.18 0.22 -2.14 16 23 C -0.15 -3.81 10.07 22.31 0.22 -3.58 16 24 C -0.09 -2.37 10.02 22.21 0.22 -2.14 16 25 C -0.16 -5.10 10.06 22.45 0.23 -4.87 16 26 C 0.08 2.77 6.72 22.68 0.15 2.92 16 27 O -0.30 -11.18 10.52 -82.28 -0.87 -12.04 16 28 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.04 1.23 5.14 -2.38 -0.01 1.21 16 30 H 0.08 1.50 7.11 -2.39 -0.02 1.48 16 31 H 0.11 1.93 8.11 -2.39 -0.02 1.91 16 32 H 0.05 1.65 7.07 -2.38 -0.02 1.63 16 33 H 0.10 1.19 4.99 -2.39 -0.01 1.18 16 34 H 0.11 1.20 7.21 -2.39 -0.02 1.19 16 35 H 0.07 1.33 5.96 -2.38 -0.01 1.31 16 36 H 0.03 1.08 7.10 -2.39 -0.02 1.06 16 37 H 0.09 1.84 7.73 -2.39 -0.02 1.82 16 38 H 0.10 1.88 4.35 -2.39 -0.01 1.87 16 39 H 0.00 0.02 6.70 -2.39 -0.02 0.01 16 40 H 0.08 3.45 3.29 -2.38 -0.01 3.45 16 41 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 42 H 0.11 3.21 4.11 -2.39 -0.01 3.20 16 43 H 0.14 2.44 7.86 -2.39 -0.02 2.42 16 44 H 0.14 3.29 8.06 -2.91 -0.02 3.26 16 45 H 0.16 2.84 8.06 -2.91 -0.02 2.81 16 46 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 47 H 0.13 3.83 8.06 -2.91 -0.02 3.81 16 Total: -1.00 -88.30 348.35 5.27 -83.04 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: 0.94 Total: 25.08 kcal Atomic # 6 Polarization: -28.83 SS G_CDS: 4.35 Total: -24.47 kcal Atomic # 7 Polarization: -84.44 SS G_CDS: -1.28 Total: -85.72 kcal Atomic # 8 Polarization: -44.53 SS G_CDS: -0.63 Total: -45.15 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.88 Total: 47.23 kcal Total: -88.30 5.27 -83.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189900754.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.649 kcal (2) G-P(sol) polarization free energy of solvation -88.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds